EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015000066 (Gene tree)
Gene ID: -
Gene Symbol: rbm47
Alias: -
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 32645 bases
Position: chr1:13090384-13123028
Accession: ZDB-GENE-030131-9612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015022957	RRM_1	PF00076.22	2.8e-40	1	3
ENSORLP00015022957	RRM_1	PF00076.22	2.8e-40	2	3
ENSORLP00015022957	RRM_1	PF00076.22	2.8e-40	3	3
ENSORLP00015001984	RRM_1	PF00076.22	4.3e-40	1	3
ENSORLP00015001984	RRM_1	PF00076.22	4.3e-40	2	3
ENSORLP00015001984	RRM_1	PF00076.22	4.3e-40	3	3
ENSORLP00015022970	RRM_1	PF00076.22	4.8e-40	1	3
ENSORLP00015022970	RRM_1	PF00076.22	4.8e-40	2	3
ENSORLP00015022970	RRM_1	PF00076.22	4.8e-40	3	3
ENSORLP00015002016	RRM_1	PF00076.22	5.3e-40	1	3
ENSORLP00015002016	RRM_1	PF00076.22	5.3e-40	2	3
ENSORLP00015002016	RRM_1	PF00076.22	5.3e-40	3	3
ENSORLP00015002024	RRM_1	PF00076.22	5.3e-40	1	3
ENSORLP00015002024	RRM_1	PF00076.22	5.3e-40	2	3
ENSORLP00015002024	RRM_1	PF00076.22	5.3e-40	3	3
ENSORLP00015002036	RRM_1	PF00076.22	5.3e-40	1	3
ENSORLP00015002036	RRM_1	PF00076.22	5.3e-40	2	3
ENSORLP00015002036	RRM_1	PF00076.22	5.3e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015011634	-	5605	-	ENSORLP00015002036	612 (aa)	-	-
ENSORLT00015011654	-	5450	-	ENSORLP00015002024	612 (aa)	-	-
ENSORLT00015011739	-	1770	-	ENSORLP00015001984	589 (aa)	-	-
ENSORLT00015011683	-	5910	-	ENSORLP00015022970	604 (aa)	-	-
ENSORLT00015011673	-	5934	-	ENSORLP00015002016	612 (aa)	-	-
ENSORLT00015011713	-	5700	-	ENSORLP00015022957	534 (aa)	-	-

Gene Model

Click here to download ENSORLG00015000066's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015000066's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015000066	rbm47	55	52.000	ENSORLG00015017032	syncrip	72	44.175
ENSORLG00015000066	rbm47	62	51.045	ENSORLG00015011114	syncripl	77	44.656
ENSORLG00015000066	rbm47	55	65.320	ENSORLG00015020234	rbm46	63	66.330
ENSORLG00015000066	rbm47	79	51.648	ENSORLG00015018569	a1cf	88	52.015

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015000066	rbm47	100	81.167	ENSG00000163694	RBM47	100	86.636	Homo_sapiens
ENSORLG00015000066	rbm47	100	94.615	ENSAPOG00000011062	rbm47	100	94.615	Acanthochromis_polyacanthus
ENSORLG00015000066	rbm47	94	83.944	ENSAMEG00000009672	RBM47	100	77.076	Ailuropoda_melanoleuca
ENSORLG00015000066	rbm47	100	92.217	ENSACIG00000011531	rbm47	100	92.217	Amphilophus_citrinellus
ENSORLG00015000066	rbm47	100	94.359	ENSAOCG00000022245	rbm47	100	94.359	Amphiprion_ocellaris
ENSORLG00015000066	rbm47	100	94.359	ENSAPEG00000018304	rbm47	100	94.359	Amphiprion_percula
ENSORLG00015000066	rbm47	100	94.072	ENSATEG00000018400	rbm47	100	91.419	Anabas_testudineus
ENSORLG00015000066	rbm47	100	81.841	ENSAPLG00000013974	RBM47	100	76.421	Anas_platyrhynchos
ENSORLG00015000066	rbm47	100	78.608	ENSACAG00000011833	RBM47	100	74.751	Anolis_carolinensis
ENSORLG00015000066	rbm47	100	83.069	ENSANAG00000029440	RBM47	100	84.840	Aotus_nancymaae
ENSORLG00015000066	rbm47	100	94.057	ENSACLG00000016902	rbm47	100	94.057	Astatotilapia_calliptera
ENSORLG00015000066	rbm47	100	82.923	ENSAMXG00000021794	rbm47	100	85.128	Astyanax_mexicanus
ENSORLG00015000066	rbm47	100	79.692	ENSBTAG00000002356	RBM47	100	78.020	Bos_taurus
ENSORLG00015000066	rbm47	97	85.393	ENSCJAG00000019385	RBM47	100	85.106	Callithrix_jacchus
ENSORLG00015000066	rbm47	93	82.720	ENSCAFG00000015898	RBM47	100	76.294	Canis_familiaris
ENSORLG00015000066	rbm47	83	78.615	ENSCAFG00020010558	RBM47	94	82.804	Canis_lupus_dingo
ENSORLG00015000066	rbm47	100	79.692	ENSCHIG00000026214	RBM47	100	78.020	Capra_hircus
ENSORLG00015000066	rbm47	86	86.547	ENSTSYG00000033612	RBM47	93	87.168	Carlito_syrichta
ENSORLG00015000066	rbm47	100	73.454	ENSCAPG00000008426	RBM47	100	75.733	Cavia_aperea
ENSORLG00015000066	rbm47	100	82.804	ENSCPOG00000014100	RBM47	100	84.574	Cavia_porcellus
ENSORLG00015000066	rbm47	100	84.574	ENSCCAG00000030129	-	100	84.574	Cebus_capucinus
ENSORLG00015000066	rbm47	99	55.184	ENSCCAG00000024397	-	99	54.348	Cebus_capucinus
ENSORLG00015000066	rbm47	100	81.167	ENSCATG00000042064	RBM47	100	85.106	Cercocebus_atys
ENSORLG00015000066	rbm47	100	82.275	ENSCLAG00000001684	RBM47	100	85.106	Chinchilla_lanigera
ENSORLG00015000066	rbm47	94	84.507	ENSCSAG00000017060	RBM47	100	77.833	Chlorocebus_sabaeus
ENSORLG00015000066	rbm47	89	74.382	ENSCHOG00000011731	RBM47	88	77.130	Choloepus_hoffmanni
ENSORLG00015000066	rbm47	100	82.776	ENSCPBG00000013831	RBM47	100	82.776	Chrysemys_picta_bellii
ENSORLG00015000066	rbm47	100	82.011	ENSCANG00000019997	RBM47	100	84.840	Colobus_angolensis_palliatus
ENSORLG00015000066	rbm47	100	81.649	ENSCGRG00001000623	-	100	82.979	Cricetulus_griseus_chok1gshd
ENSORLG00015000066	rbm47	100	76.658	ENSCGRG00001020102	-	100	78.249	Cricetulus_griseus_chok1gshd
ENSORLG00015000066	rbm47	100	76.127	ENSCGRG00000014760	-	100	77.719	Cricetulus_griseus_crigri
ENSORLG00015000066	rbm47	100	78.517	ENSCGRG00000007762	-	100	81.013	Cricetulus_griseus_crigri
ENSORLG00015000066	rbm47	100	89.189	ENSCSEG00000004545	rbm47	100	89.020	Cynoglossus_semilaevis
ENSORLG00015000066	rbm47	100	92.821	ENSCVAG00000020144	rbm47	100	92.821	Cyprinodon_variegatus
ENSORLG00015000066	rbm47	100	81.713	ENSDARG00000061985	rbm47	100	86.082	Danio_rerio
ENSORLG00015000066	rbm47	94	85.393	ENSDNOG00000046854	RBM47	100	78.246	Dasypus_novemcinctus
ENSORLG00015000066	rbm47	100	80.867	ENSDORG00000010144	Rbm47	100	76.578	Dipodomys_ordii
ENSORLG00015000066	rbm47	94	82.682	ENSETEG00000009194	RBM47	100	77.129	Echinops_telfairi
ENSORLG00015000066	rbm47	91	73.775	ENSEBUG00000011912	rbm47	95	73.775	Eptatretus_burgeri
ENSORLG00015000066	rbm47	94	85.112	ENSEASG00005008443	RBM47	100	78.356	Equus_asinus_asinus
ENSORLG00015000066	rbm47	94	85.112	ENSECAG00000004400	RBM47	100	78.356	Equus_caballus
ENSORLG00015000066	rbm47	75	84.416	ENSEEUG00000001194	RBM47	75	85.714	Erinaceus_europaeus
ENSORLG00015000066	rbm47	100	87.563	ENSELUG00000006148	rbm47	100	87.563	Esox_lucius
ENSORLG00015000066	rbm47	94	83.944	ENSFCAG00000012399	RBM47	100	78.824	Felis_catus
ENSORLG00015000066	rbm47	100	82.005	ENSFALG00000002861	RBM47	100	77.833	Ficedula_albicollis
ENSORLG00015000066	rbm47	100	79.949	ENSFDAG00000016326	RBM47	100	79.949	Fukomys_damarensis
ENSORLG00015000066	rbm47	100	91.990	ENSFHEG00000007938	rbm47	100	89.238	Fundulus_heteroclitus
ENSORLG00015000066	rbm47	100	87.817	ENSGMOG00000014802	rbm47	100	82.039	Gadus_morhua
ENSORLG00015000066	rbm47	72	82.776	ENSGALG00000014267	RBM47	99	85.638	Gallus_gallus
ENSORLG00015000066	rbm47	72	88.889	ENSGAFG00000020571	rbm47	98	91.689	Gambusia_affinis
ENSORLG00015000066	rbm47	100	89.127	ENSGACG00000016223	rbm47	100	91.282	Gasterosteus_aculeatus
ENSORLG00015000066	rbm47	100	82.776	ENSGAGG00000020051	RBM47	100	78.261	Gopherus_agassizii
ENSORLG00015000066	rbm47	100	81.167	ENSGGOG00000001367	RBM47	100	85.106	Gorilla_gorilla
ENSORLG00015000066	rbm47	100	94.057	ENSHBUG00000003520	rbm47	100	94.057	Haplochromis_burtoni
ENSORLG00015000066	rbm47	100	59.926	ENSHGLG00000016914	RBM47	100	81.013	Heterocephalus_glaber_female
ENSORLG00015000066	rbm47	100	82.713	ENSHGLG00100014028	-	100	82.713	Heterocephalus_glaber_male
ENSORLG00015000066	rbm47	100	76.864	ENSHGLG00100003071	-	100	68.896	Heterocephalus_glaber_male
ENSORLG00015000066	rbm47	99	92.308	ENSHCOG00000002074	rbm47	99	92.308	Hippocampus_comes
ENSORLG00015000066	rbm47	100	87.147	ENSIPUG00000004743	rbm47	100	87.147	Ictalurus_punctatus
ENSORLG00015000066	rbm47	100	81.167	ENSSTOG00000004727	RBM47	100	83.862	Ictidomys_tridecemlineatus
ENSORLG00015000066	rbm47	94	85.674	ENSJJAG00000013823	Rbm47	100	75.954	Jaculus_jaculus
ENSORLG00015000066	rbm47	100	92.327	ENSKMAG00000000084	rbm47	100	92.327	Kryptolebias_marmoratus
ENSORLG00015000066	rbm47	100	91.795	ENSLBEG00000008436	rbm47	100	91.457	Labrus_bergylta
ENSORLG00015000066	rbm47	94	83.511	ENSLACG00000007196	RBM47	100	77.349	Latimeria_chalumnae
ENSORLG00015000066	rbm47	94	90.423	ENSLOCG00000012966	rbm47	95	85.309	Lepisosteus_oculatus
ENSORLG00015000066	rbm47	100	78.866	ENSLAFG00000011998	RBM47	100	77.258	Loxodonta_africana
ENSORLG00015000066	rbm47	100	81.167	ENSMFAG00000037967	RBM47	100	85.106	Macaca_fascicularis
ENSORLG00015000066	rbm47	94	84.507	ENSMMUG00000012036	RBM47	100	84.974	Macaca_mulatta
ENSORLG00015000066	rbm47	100	81.167	ENSMNEG00000040774	RBM47	100	85.106	Macaca_nemestrina
ENSORLG00015000066	rbm47	100	83.492	ENSMLEG00000041432	RBM47	100	86.667	Mandrillus_leucophaeus
ENSORLG00015000066	rbm47	100	93.540	ENSMAMG00000019143	rbm47	100	93.540	Mastacembelus_armatus
ENSORLG00015000066	rbm47	100	94.057	ENSMZEG00005023659	rbm47	100	94.057	Maylandia_zebra
ENSORLG00015000066	rbm47	100	82.262	ENSMGAG00000012226	RBM47	100	77.833	Meleagris_gallopavo
ENSORLG00015000066	rbm47	100	81.432	ENSMAUG00000006493	Rbm47	100	82.759	Mesocricetus_auratus
ENSORLG00015000066	rbm47	100	78.723	ENSMICG00000026417	RBM47	100	82.058	Microcebus_murinus
ENSORLG00015000066	rbm47	100	81.383	ENSMOCG00000021170	Rbm47	100	82.713	Microtus_ochrogaster
ENSORLG00015000066	rbm47	100	90.909	ENSMMOG00000007260	rbm47	100	90.909	Mola_mola
ENSORLG00015000066	rbm47	100	83.333	ENSMODG00000007003	RBM47	100	77.704	Monodelphis_domestica
ENSORLG00015000066	rbm47	100	75.795	ENSMODG00000020561	-	100	73.862	Monodelphis_domestica
ENSORLG00015000066	rbm47	58	77.044	ENSMODG00000015426	-	97	78.135	Monodelphis_domestica
ENSORLG00015000066	rbm47	100	93.299	ENSMALG00000005167	rbm47	100	93.299	Monopterus_albus
ENSORLG00015000066	rbm47	100	81.117	MGP_CAROLIEiJ_G0027258	Rbm47	100	82.447	Mus_caroli
ENSORLG00015000066	rbm47	100	81.117	ENSMUSG00000070780	Rbm47	100	82.447	Mus_musculus
ENSORLG00015000066	rbm47	100	81.383	MGP_PahariEiJ_G0017040	Rbm47	100	82.713	Mus_pahari
ENSORLG00015000066	rbm47	100	81.117	MGP_SPRETEiJ_G0028253	Rbm47	100	82.447	Mus_spretus
ENSORLG00015000066	rbm47	94	85.112	ENSMPUG00000006177	RBM47	94	77.129	Mustela_putorius_furo
ENSORLG00015000066	rbm47	100	80.513	ENSMLUG00000000889	RBM47	100	75.920	Myotis_lucifugus
ENSORLG00015000066	rbm47	100	79.949	ENSNGAG00000003325	Rbm47	100	75.500	Nannospalax_galili
ENSORLG00015000066	rbm47	100	91.162	ENSNBRG00000015092	rbm47	100	91.162	Neolamprologus_brichardi
ENSORLG00015000066	rbm47	100	81.167	ENSNLEG00000017151	RBM47	100	85.106	Nomascus_leucogenys
ENSORLG00015000066	rbm47	66	87.395	ENSMEUG00000009516	-	100	79.630	Notamacropus_eugenii
ENSORLG00015000066	rbm47	86	85.537	ENSOPRG00000016507	-	75	85.537	Ochotona_princeps
ENSORLG00015000066	rbm47	94	83.944	ENSODEG00000004873	RBM47	100	78.188	Octodon_degus
ENSORLG00015000066	rbm47	100	90.640	ENSONIG00000009061	rbm47	100	90.969	Oreochromis_niloticus
ENSORLG00015000066	rbm47	100	81.360	ENSOANG00000008978	RBM47	100	77.741	Ornithorhynchus_anatinus
ENSORLG00015000066	rbm47	100	79.692	ENSOCUG00000012034	RBM47	100	77.387	Oryctolagus_cuniculus
ENSORLG00015000066	rbm47	100	99.742	ENSORLG00000005847	rbm47	100	99.742	Oryzias_latipes
ENSORLG00015000066	rbm47	100	99.742	ENSORLG00020005154	rbm47	100	99.742	Oryzias_latipes_hni
ENSORLG00015000066	rbm47	100	98.191	ENSOMEG00000010730	rbm47	100	96.604	Oryzias_melastigma
ENSORLG00015000066	rbm47	94	84.507	ENSOGAG00000029367	-	100	76.795	Otolemur_garnettii
ENSORLG00015000066	rbm47	94	79.494	ENSOGAG00000025193	-	100	70.588	Otolemur_garnettii
ENSORLG00015000066	rbm47	100	69.128	ENSOARG00000012711	RBM47	100	70.134	Ovis_aries
ENSORLG00015000066	rbm47	94	84.507	ENSPPAG00000029763	RBM47	95	85.106	Pan_paniscus
ENSORLG00015000066	rbm47	100	74.454	ENSPPRG00000012873	RBM47	100	84.574	Panthera_pardus
ENSORLG00015000066	rbm47	81	85.315	ENSPTIG00000017046	RBM47	100	76.190	Panthera_tigris_altaica
ENSORLG00015000066	rbm47	100	81.167	ENSPTRG00000016006	RBM47	100	85.106	Pan_troglodytes
ENSORLG00015000066	rbm47	100	81.167	ENSPANG00000005980	RBM47	100	85.106	Papio_anubis
ENSORLG00015000066	rbm47	100	79.815	ENSPKIG00000013431	RBM47	98	85.492	Paramormyrops_kingsleyae
ENSORLG00015000066	rbm47	94	89.045	ENSPKIG00000005037	rbm47	100	84.615	Paramormyrops_kingsleyae
ENSORLG00015000066	rbm47	89	80.907	ENSPSIG00000017516	RBM47	97	80.907	Pelodiscus_sinensis
ENSORLG00015000066	rbm47	100	89.813	ENSPMGG00000018540	rbm47	100	89.813	Periophthalmus_magnuspinnatus
ENSORLG00015000066	rbm47	100	81.383	ENSPEMG00000011088	Rbm47	100	82.713	Peromyscus_maniculatus_bairdii
ENSORLG00015000066	rbm47	100	89.421	ENSPFOG00000007997	rbm47	100	89.421	Poecilia_formosa
ENSORLG00015000066	rbm47	100	89.169	ENSPLAG00000002072	rbm47	100	91.667	Poecilia_latipinna
ENSORLG00015000066	rbm47	100	90.513	ENSPMEG00000017492	rbm47	100	90.513	Poecilia_mexicana
ENSORLG00015000066	rbm47	100	90.769	ENSPREG00000008456	rbm47	100	91.935	Poecilia_reticulata
ENSORLG00015000066	rbm47	94	74.302	ENSPPYG00000014688	RBM47	98	69.257	Pongo_abelii
ENSORLG00015000066	rbm47	89	77.468	ENSPCAG00000011879	RBM47	81	83.750	Procavia_capensis
ENSORLG00015000066	rbm47	100	79.521	ENSPCOG00000023451	RBM47	100	82.759	Propithecus_coquereli
ENSORLG00015000066	rbm47	94	84.034	ENSPVAG00000003812	RBM47	100	77.129	Pteropus_vampyrus
ENSORLG00015000066	rbm47	100	91.028	ENSPNYG00000022868	rbm47	100	91.028	Pundamilia_nyererei
ENSORLG00015000066	rbm47	100	82.759	ENSPNAG00000007940	rbm47	100	86.154	Pygocentrus_nattereri
ENSORLG00015000066	rbm47	100	79.028	ENSRNOG00000002408	Rbm47	100	76.254	Rattus_norvegicus
ENSORLG00015000066	rbm47	100	82.011	ENSRBIG00000039601	RBM47	100	84.840	Rhinopithecus_bieti
ENSORLG00015000066	rbm47	100	82.011	ENSRROG00000044696	RBM47	100	84.840	Rhinopithecus_roxellana
ENSORLG00015000066	rbm47	100	74.536	ENSSBOG00000028475	RBM47	100	81.276	Saimiri_boliviensis_boliviensis
ENSORLG00015000066	rbm47	100	83.077	ENSSHAG00000017576	RBM47	100	83.077	Sarcophilus_harrisii
ENSORLG00015000066	rbm47	100	78.878	ENSSFOG00015012445	rbm47	100	84.399	Scleropages_formosus
ENSORLG00015000066	rbm47	98	82.804	ENSSFOG00015024101	RBM47	100	82.804	Scleropages_formosus
ENSORLG00015000066	rbm47	100	92.784	ENSSMAG00000009744	rbm47	100	92.784	Scophthalmus_maximus
ENSORLG00015000066	rbm47	100	92.640	ENSSDUG00000022684	rbm47	99	93.493	Seriola_dumerili
ENSORLG00015000066	rbm47	100	92.542	ENSSLDG00000003109	rbm47	100	92.542	Seriola_lalandi_dorsalis
ENSORLG00015000066	rbm47	85	79.733	ENSSARG00000001735	RBM47	75	82.183	Sorex_araneus
ENSORLG00015000066	rbm47	100	82.895	ENSSPUG00000007515	RBM47	100	83.333	Sphenodon_punctatus
ENSORLG00015000066	rbm47	100	94.615	ENSSPAG00000001257	rbm47	100	94.615	Stegastes_partitus
ENSORLG00015000066	rbm47	94	84.831	ENSSSCG00000008796	RBM47	100	77.852	Sus_scrofa
ENSORLG00015000066	rbm47	100	81.748	ENSTGUG00000008705	RBM47	100	77.722	Taeniopygia_guttata
ENSORLG00015000066	rbm47	100	89.304	ENSTRUG00000014050	rbm47	100	89.304	Takifugu_rubripes
ENSORLG00015000066	rbm47	100	89.570	ENSTNIG00000006127	rbm47	100	89.570	Tetraodon_nigroviridis
ENSORLG00015000066	rbm47	82	82.817	ENSTBEG00000001607	RBM47	76	82.447	Tupaia_belangeri
ENSORLG00015000066	rbm47	94	85.112	ENSTTRG00000002839	RBM47	100	77.778	Tursiops_truncatus
ENSORLG00015000066	rbm47	94	83.944	ENSUAMG00000021346	RBM47	100	77.629	Ursus_americanus
ENSORLG00015000066	rbm47	52	84.127	ENSVPAG00000000641	-	56	82.759	Vicugna_pacos
ENSORLG00015000066	rbm47	93	83.569	ENSVVUG00000014774	RBM47	100	76.421	Vulpes_vulpes
ENSORLG00015000066	rbm47	100	81.586	ENSXETG00000012802	rbm47	100	76.254	Xenopus_tropicalis
ENSORLG00015000066	rbm47	100	86.592	ENSXCOG00000000780	rbm47	100	91.935	Xiphophorus_couchianus
ENSORLG00015000066	rbm47	100	91.026	ENSXMAG00000009874	rbm47	100	91.026	Xiphophorus_maculatus