EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015000171 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 27075 bases
Position: chr8:13378694-13405768
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015005218	Ago_hook	PF10427.9	3e-06	1	1
ENSORLP00015005247	Ago_hook	PF10427.9	3.4e-06	1	1
ENSORLP00015005230	Ago_hook	PF10427.9	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015006292	-	4089	-	ENSORLP00015005218	1362 (aa)	-	-
ENSORLT00015006274	-	4276	-	ENSORLP00015005230	1388 (aa)	-	-
ENSORLT00015006248	-	4286	-	ENSORLP00015005247	1263 (aa)	-	-

Gene Model

Click here to download ENSORLG00015000171's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015000171's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015000171	tnrc6c1	52	58.743	ENSORLG00015009232	tnrc6c2	72	47.240

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015000171	tnrc6c1	98	44.606	ENSG00000078687	TNRC6C	95	52.252	Homo_sapiens
ENSORLG00015000171	tnrc6c1	99	77.835	ENSAPOG00000019749	tnrc6c1	80	77.476	Acanthochromis_polyacanthus
ENSORLG00015000171	tnrc6c1	98	42.779	ENSAMEG00000013756	TNRC6C	78	41.750	Ailuropoda_melanoleuca
ENSORLG00015000171	tnrc6c1	99	66.135	ENSACIG00000008075	tnrc6c1	77	67.104	Amphilophus_citrinellus
ENSORLG00015000171	tnrc6c1	99	78.219	ENSAOCG00000023968	tnrc6c1	80	78.006	Amphiprion_ocellaris
ENSORLG00015000171	tnrc6c1	99	78.146	ENSAPEG00000009020	tnrc6c1	80	77.933	Amphiprion_percula
ENSORLG00015000171	tnrc6c1	98	43.208	ENSAPLG00000005456	TNRC6C	75	42.221	Anas_platyrhynchos
ENSORLG00015000171	tnrc6c1	97	43.685	ENSACAG00000016198	TNRC6C	73	42.587	Anolis_carolinensis
ENSORLG00015000171	tnrc6c1	98	44.529	ENSANAG00000021554	TNRC6C	72	45.277	Aotus_nancymaae
ENSORLG00015000171	tnrc6c1	97	68.022	ENSACLG00000000424	tnrc6c1	78	67.842	Astatotilapia_calliptera
ENSORLG00015000171	tnrc6c1	87	61.111	ENSBTAG00000018658	TNRC6C	72	45.106	Bos_taurus
ENSORLG00015000171	tnrc6c1	98	44.391	ENSCJAG00000019431	TNRC6C	72	45.639	Callithrix_jacchus
ENSORLG00015000171	tnrc6c1	89	51.979	ENSCAFG00000005224	TNRC6C	72	43.763	Canis_familiaris
ENSORLG00015000171	tnrc6c1	94	44.877	ENSCAFG00020006661	TNRC6C	81	44.260	Canis_lupus_dingo
ENSORLG00015000171	tnrc6c1	84	61.034	ENSCHIG00000026004	TNRC6C	75	41.971	Capra_hircus
ENSORLG00015000171	tnrc6c1	94	45.743	ENSTSYG00000005403	TNRC6C	70	45.298	Carlito_syrichta
ENSORLG00015000171	tnrc6c1	98	40.815	ENSCAPG00000007307	TNRC6C	76	39.948	Cavia_aperea
ENSORLG00015000171	tnrc6c1	98	43.481	ENSCPOG00000000467	TNRC6C	81	43.020	Cavia_porcellus
ENSORLG00015000171	tnrc6c1	98	45.302	ENSCCAG00000030524	TNRC6C	72	45.320	Cebus_capucinus
ENSORLG00015000171	tnrc6c1	98	44.921	ENSCATG00000033135	TNRC6C	72	45.305	Cercocebus_atys
ENSORLG00015000171	tnrc6c1	98	44.790	ENSCLAG00000011139	TNRC6C	75	44.277	Chinchilla_lanigera
ENSORLG00015000171	tnrc6c1	98	44.921	ENSCSAG00000005167	TNRC6C	74	43.063	Chlorocebus_sabaeus
ENSORLG00015000171	tnrc6c1	98	46.044	ENSCPBG00000027960	TNRC6C	81	43.107	Chrysemys_picta_bellii
ENSORLG00015000171	tnrc6c1	98	44.851	ENSCANG00000041771	TNRC6C	72	45.227	Colobus_angolensis_palliatus
ENSORLG00015000171	tnrc6c1	98	43.347	ENSCGRG00001022686	Tnrc6c	76	42.150	Cricetulus_griseus_chok1gshd
ENSORLG00015000171	tnrc6c1	98	43.802	ENSCGRG00000018041	Tnrc6c	76	42.642	Cricetulus_griseus_crigri
ENSORLG00015000171	tnrc6c1	98	71.067	ENSCSEG00000012744	tnrc6c1	76	70.288	Cynoglossus_semilaevis
ENSORLG00015000171	tnrc6c1	90	69.173	ENSDARG00000076847	tnrc6c1	76	53.338	Danio_rerio
ENSORLG00015000171	tnrc6c1	98	44.864	ENSDNOG00000003247	TNRC6C	75	44.227	Dasypus_novemcinctus
ENSORLG00015000171	tnrc6c1	97	39.987	ENSDORG00000004558	Tnrc6c	76	39.948	Dipodomys_ordii
ENSORLG00015000171	tnrc6c1	81	49.587	ENSETEG00000005527	TNRC6C	62	49.412	Echinops_telfairi
ENSORLG00015000171	tnrc6c1	98	43.154	ENSEASG00005004799	TNRC6C	72	44.819	Equus_asinus_asinus
ENSORLG00015000171	tnrc6c1	98	43.154	ENSECAG00000012486	TNRC6C	79	42.502	Equus_caballus
ENSORLG00015000171	tnrc6c1	86	55.149	ENSEEUG00000010008	TNRC6C	74	53.701	Erinaceus_europaeus
ENSORLG00015000171	tnrc6c1	98	43.595	ENSFCAG00000028358	TNRC6C	81	43.379	Felis_catus
ENSORLG00015000171	tnrc6c1	76	47.232	ENSFALG00000000848	TNRC6C	71	44.012	Ficedula_albicollis
ENSORLG00015000171	tnrc6c1	98	43.698	ENSFDAG00000010368	TNRC6C	81	43.298	Fukomys_damarensis
ENSORLG00015000171	tnrc6c1	99	74.578	ENSFHEG00000002936	tnrc6c1	78	74.063	Fundulus_heteroclitus
ENSORLG00015000171	tnrc6c1	98	46.033	ENSGALG00000001725	TNRC6C	80	44.044	Gallus_gallus
ENSORLG00015000171	tnrc6c1	99	76.453	ENSGAFG00000019019	tnrc6c1	80	75.865	Gambusia_affinis
ENSORLG00015000171	tnrc6c1	99	65.382	ENSGACG00000012320	tnrc6c1	74	65.156	Gasterosteus_aculeatus
ENSORLG00015000171	tnrc6c1	98	45.792	ENSGAGG00000022043	TNRC6C	81	43.813	Gopherus_agassizii
ENSORLG00015000171	tnrc6c1	98	44.675	ENSGGOG00000011304	TNRC6C	72	45.781	Gorilla_gorilla
ENSORLG00015000171	tnrc6c1	97	74.131	ENSHBUG00000010846	tnrc6c1	79	73.451	Haplochromis_burtoni
ENSORLG00015000171	tnrc6c1	98	43.936	ENSHGLG00000004809	TNRC6C	75	42.651	Heterocephalus_glaber_female
ENSORLG00015000171	tnrc6c1	98	43.478	ENSHGLG00100012597	TNRC6C	76	42.222	Heterocephalus_glaber_male
ENSORLG00015000171	tnrc6c1	98	55.581	ENSIPUG00000000818	tnrc6c1	75	53.516	Ictalurus_punctatus
ENSORLG00015000171	tnrc6c1	98	44.199	ENSSTOG00000009101	TNRC6C	81	43.048	Ictidomys_tridecemlineatus
ENSORLG00015000171	tnrc6c1	98	43.975	ENSJJAG00000017055	Tnrc6c	76	42.205	Jaculus_jaculus
ENSORLG00015000171	tnrc6c1	98	70.481	ENSKMAG00000021023	tnrc6c1	78	69.771	Kryptolebias_marmoratus
ENSORLG00015000171	tnrc6c1	98	43.377	ENSLACG00000015283	TNRC6C	80	42.982	Latimeria_chalumnae
ENSORLG00015000171	tnrc6c1	98	78.041	ENSLOCG00000013377	tnrc6c1	70	78.716	Lepisosteus_oculatus
ENSORLG00015000171	tnrc6c1	97	42.249	ENSLAFG00000011122	TNRC6C	79	41.989	Loxodonta_africana
ENSORLG00015000171	tnrc6c1	98	44.921	ENSMFAG00000043943	TNRC6C	72	45.305	Macaca_fascicularis
ENSORLG00015000171	tnrc6c1	98	44.921	ENSMMUG00000011924	TNRC6C	72	45.305	Macaca_mulatta
ENSORLG00015000171	tnrc6c1	98	44.759	ENSMNEG00000030405	TNRC6C	72	45.227	Macaca_nemestrina
ENSORLG00015000171	tnrc6c1	98	44.921	ENSMLEG00000033436	TNRC6C	72	45.305	Mandrillus_leucophaeus
ENSORLG00015000171	tnrc6c1	99	74.063	ENSMAMG00000023613	tnrc6c1	80	74.170	Mastacembelus_armatus
ENSORLG00015000171	tnrc6c1	97	74.251	ENSMZEG00005010920	tnrc6c1	78	73.412	Maylandia_zebra
ENSORLG00015000171	tnrc6c1	95	43.860	ENSMGAG00000003906	TNRC6C	73	41.833	Meleagris_gallopavo
ENSORLG00015000171	tnrc6c1	98	43.386	ENSMAUG00000021618	Tnrc6c	72	44.062	Mesocricetus_auratus
ENSORLG00015000171	tnrc6c1	98	43.867	ENSMICG00000003952	TNRC6C	72	45.176	Microcebus_murinus
ENSORLG00015000171	tnrc6c1	98	43.776	ENSMOCG00000015879	Tnrc6c	81	42.637	Microtus_ochrogaster
ENSORLG00015000171	tnrc6c1	98	72.283	ENSMMOG00000005203	tnrc6c1	78	71.969	Mola_mola
ENSORLG00015000171	tnrc6c1	98	42.382	ENSMODG00000001785	TNRC6C	76	41.426	Monodelphis_domestica
ENSORLG00015000171	tnrc6c1	98	43.331	MGP_CAROLIEiJ_G0017465	Tnrc6c	81	42.243	Mus_caroli
ENSORLG00015000171	tnrc6c1	97	43.636	ENSMUSG00000025571	Tnrc6c	81	42.465	Mus_musculus
ENSORLG00015000171	tnrc6c1	98	43.607	MGP_PahariEiJ_G0018593	Tnrc6c	81	42.609	Mus_pahari
ENSORLG00015000171	tnrc6c1	97	43.566	MGP_SPRETEiJ_G0018309	Tnrc6c	81	42.398	Mus_spretus
ENSORLG00015000171	tnrc6c1	97	42.736	ENSMPUG00000013348	TNRC6C	73	41.990	Mustela_putorius_furo
ENSORLG00015000171	tnrc6c1	97	41.426	ENSMLUG00000014431	TNRC6C	73	41.591	Myotis_lucifugus
ENSORLG00015000171	tnrc6c1	97	42.290	ENSNGAG00000012203	Tnrc6c	75	41.971	Nannospalax_galili
ENSORLG00015000171	tnrc6c1	97	74.595	ENSNBRG00000005344	tnrc6c1	79	73.801	Neolamprologus_brichardi
ENSORLG00015000171	tnrc6c1	98	41.396	ENSNLEG00000000047	TNRC6C	74	40.521	Nomascus_leucogenys
ENSORLG00015000171	tnrc6c1	95	40.119	ENSMEUG00000005104	TNRC6C	80	60.000	Notamacropus_eugenii
ENSORLG00015000171	tnrc6c1	98	44.421	ENSODEG00000012499	TNRC6C	80	44.375	Octodon_degus
ENSORLG00015000171	tnrc6c1	97	74.797	ENSONIG00000002210	tnrc6c1	78	73.923	Oreochromis_niloticus
ENSORLG00015000171	tnrc6c1	99	97.755	ENSORLG00000009837	tnrc6c1	80	97.695	Oryzias_latipes
ENSORLG00015000171	tnrc6c1	99	98.075	ENSORLG00020016510	tnrc6c1	79	98.075	Oryzias_latipes_hni
ENSORLG00015000171	tnrc6c1	99	93.165	ENSOMEG00000000357	tnrc6c1	80	92.793	Oryzias_melastigma
ENSORLG00015000171	tnrc6c1	98	42.649	ENSOGAG00000007197	TNRC6C	70	43.858	Otolemur_garnettii
ENSORLG00015000171	tnrc6c1	97	41.086	ENSOARG00000006041	TNRC6C	75	41.622	Ovis_aries
ENSORLG00015000171	tnrc6c1	98	44.675	ENSPPAG00000027160	TNRC6C	72	45.497	Pan_paniscus
ENSORLG00015000171	tnrc6c1	94	44.213	ENSPPRG00000018881	TNRC6C	72	44.774	Panthera_pardus
ENSORLG00015000171	tnrc6c1	98	44.744	ENSPTRG00000009699	TNRC6C	72	45.576	Pan_troglodytes
ENSORLG00015000171	tnrc6c1	98	44.921	ENSPANG00000019994	TNRC6C	72	45.412	Papio_anubis
ENSORLG00015000171	tnrc6c1	98	47.927	ENSPKIG00000005428	tnrc6c1	78	49.411	Paramormyrops_kingsleyae
ENSORLG00015000171	tnrc6c1	98	44.152	ENSPSIG00000018069	TNRC6C	81	43.019	Pelodiscus_sinensis
ENSORLG00015000171	tnrc6c1	97	42.606	ENSPEMG00000009785	Tnrc6c	73	44.019	Peromyscus_maniculatus_bairdii
ENSORLG00015000171	tnrc6c1	68	38.531	ENSPCIG00000017421	-	85	38.801	Phascolarctos_cinereus
ENSORLG00015000171	tnrc6c1	98	76.862	ENSPFOG00000012560	tnrc6c1	80	69.814	Poecilia_formosa
ENSORLG00015000171	tnrc6c1	98	76.783	ENSPLAG00000021055	tnrc6c1	78	76.307	Poecilia_latipinna
ENSORLG00015000171	tnrc6c1	98	44.882	ENSPPYG00000008679	TNRC6C	73	43.287	Pongo_abelii
ENSORLG00015000171	tnrc6c1	81	55.319	ENSPCAG00000012510	TNRC6C	70	55.319	Procavia_capensis
ENSORLG00015000171	tnrc6c1	98	44.229	ENSPCOG00000021451	TNRC6C	72	45.070	Propithecus_coquereli
ENSORLG00015000171	tnrc6c1	71	48.374	ENSPVAG00000002008	TNRC6C	81	42.091	Pteropus_vampyrus
ENSORLG00015000171	tnrc6c1	97	74.313	ENSPNYG00000014477	tnrc6c1	78	73.604	Pundamilia_nyererei
ENSORLG00015000171	tnrc6c1	94	43.206	ENSRNOG00000022395	Tnrc6c	72	44.035	Rattus_norvegicus
ENSORLG00015000171	tnrc6c1	98	44.851	ENSRBIG00000027777	TNRC6C	72	45.227	Rhinopithecus_bieti
ENSORLG00015000171	tnrc6c1	98	44.851	ENSRROG00000042912	TNRC6C	72	45.227	Rhinopithecus_roxellana
ENSORLG00015000171	tnrc6c1	98	44.628	ENSSBOG00000023981	TNRC6C	75	42.198	Saimiri_boliviensis_boliviensis
ENSORLG00015000171	tnrc6c1	92	60.075	ENSSFOG00015004735	-	62	59.475	Scleropages_formosus
ENSORLG00015000171	tnrc6c1	98	52.686	ENSSFOG00015006475	tnrc6c1	78	51.482	Scleropages_formosus
ENSORLG00015000171	tnrc6c1	99	73.588	ENSSMAG00000012761	tnrc6c1	80	73.221	Scophthalmus_maximus
ENSORLG00015000171	tnrc6c1	98	76.331	ENSSDUG00000002366	tnrc6c1	79	76.484	Seriola_dumerili
ENSORLG00015000171	tnrc6c1	98	76.070	ENSSLDG00000025613	tnrc6c1	79	76.862	Seriola_lalandi_dorsalis
ENSORLG00015000171	tnrc6c1	65	56.522	ENSSARG00000006816	TNRC6C	76	56.522	Sorex_araneus
ENSORLG00015000171	tnrc6c1	78	43.722	ENSSPUG00000007341	TNRC6C	65	46.514	Sphenodon_punctatus
ENSORLG00015000171	tnrc6c1	99	76.795	ENSSPAG00000014977	tnrc6c1	80	77.535	Stegastes_partitus
ENSORLG00015000171	tnrc6c1	98	43.234	ENSSSCG00000034373	TNRC6C	72	44.688	Sus_scrofa
ENSORLG00015000171	tnrc6c1	76	48.387	ENSTGUG00000007733	TNRC6C	81	43.342	Taeniopygia_guttata
ENSORLG00015000171	tnrc6c1	98	70.071	ENSTRUG00000011685	tnrc6c1	79	68.971	Takifugu_rubripes
ENSORLG00015000171	tnrc6c1	97	63.418	ENSTNIG00000005273	tnrc6c1	80	63.233	Tetraodon_nigroviridis
ENSORLG00015000171	tnrc6c1	71	47.508	ENSTBEG00000005046	TNRC6C	86	46.012	Tupaia_belangeri
ENSORLG00015000171	tnrc6c1	98	43.253	ENSTTRG00000010828	TNRC6C	81	43.365	Tursiops_truncatus
ENSORLG00015000171	tnrc6c1	98	41.748	ENSUMAG00000013614	TNRC6C	74	41.851	Ursus_maritimus
ENSORLG00015000171	tnrc6c1	51	58.478	ENSVPAG00000006765	-	67	56.747	Vicugna_pacos
ENSORLG00015000171	tnrc6c1	94	46.298	ENSVVUG00000015268	TNRC6C	80	43.983	Vulpes_vulpes
ENSORLG00015000171	tnrc6c1	98	43.515	ENSXETG00000019470	tnrc6c	80	42.558	Xenopus_tropicalis
ENSORLG00015000171	tnrc6c1	99	76.012	ENSXMAG00000025971	tnrc6c1	80	75.570	Xiphophorus_maculatus