EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015000659 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 11665 bases
Position: chr16:7905888-7917552
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015028758	RRM_1	PF00076.22	7.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015017448	-	3764	-	ENSORLP00015028758	403 (aa)	-	-

Gene Model

Click here to download ENSORLG00015000659's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015000659's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015000659	rbm42	100	82.020	ENSAPOG00000015109	rbm42	100	82.020	Acanthochromis_polyacanthus
ENSORLG00015000659	rbm42	100	79.259	ENSACIG00000010771	rbm42	100	79.259	Amphilophus_citrinellus
ENSORLG00015000659	rbm42	100	81.773	ENSAOCG00000008873	rbm42	100	81.773	Amphiprion_ocellaris
ENSORLG00015000659	rbm42	100	81.773	ENSAPEG00000012051	rbm42	99	81.773	Amphiprion_percula
ENSORLG00015000659	rbm42	100	83.168	ENSATEG00000000536	rbm42	100	82.673	Anabas_testudineus
ENSORLG00015000659	rbm42	100	82.716	ENSACLG00000004988	rbm42	100	82.716	Astatotilapia_calliptera
ENSORLG00015000659	rbm42	100	68.129	ENSAMXG00000016545	rbm42	100	69.952	Astyanax_mexicanus
ENSORLG00015000659	rbm42	97	79.345	ENSCSEG00000010248	rbm42	100	79.345	Cynoglossus_semilaevis
ENSORLG00015000659	rbm42	100	78.293	ENSCVAG00000015589	rbm42	100	78.049	Cyprinodon_variegatus
ENSORLG00015000659	rbm42	100	67.062	ENSDARG00000039910	rbm42	100	68.780	Danio_rerio
ENSORLG00015000659	rbm42	100	68.384	ENSELUG00000022403	rbm42	100	68.706	Esox_lucius
ENSORLG00015000659	rbm42	72	77.926	ENSFHEG00000006764	rbm42	100	78.930	Fundulus_heteroclitus
ENSORLG00015000659	rbm42	100	65.468	ENSGMOG00000012660	rbm42	100	67.726	Gadus_morhua
ENSORLG00015000659	rbm42	76	79.743	ENSGAFG00000009059	rbm42	99	79.221	Gambusia_affinis
ENSORLG00015000659	rbm42	100	79.012	ENSGACG00000004170	rbm42	100	78.765	Gasterosteus_aculeatus
ENSORLG00015000659	rbm42	100	82.469	ENSHBUG00000011141	rbm42	100	82.469	Haplochromis_burtoni
ENSORLG00015000659	rbm42	100	76.225	ENSHCOG00000021214	rbm42	100	76.658	Hippocampus_comes
ENSORLG00015000659	rbm42	100	67.281	ENSIPUG00000022365	rbm42	99	70.192	Ictalurus_punctatus
ENSORLG00015000659	rbm42	91	79.404	ENSKMAG00000015287	rbm42	99	79.133	Kryptolebias_marmoratus
ENSORLG00015000659	rbm42	84	76.812	ENSLBEG00000004578	-	96	74.566	Labrus_bergylta
ENSORLG00015000659	rbm42	100	77.451	ENSLBEG00000017547	rbm42	100	75.550	Labrus_bergylta
ENSORLG00015000659	rbm42	100	63.723	ENSLOCG00000003368	rbm42	100	65.714	Lepisosteus_oculatus
ENSORLG00015000659	rbm42	100	82.512	ENSMAMG00000006708	rbm42	100	82.266	Mastacembelus_armatus
ENSORLG00015000659	rbm42	100	82.716	ENSMZEG00005025234	rbm42	100	82.716	Maylandia_zebra
ENSORLG00015000659	rbm42	91	81.030	ENSMALG00000015720	rbm42	100	81.030	Monopterus_albus
ENSORLG00015000659	rbm42	100	82.353	ENSONIG00000008029	rbm42	100	82.353	Oreochromis_niloticus
ENSORLG00015000659	rbm42	100	73.113	ENSORLG00020022507	rbm42	100	73.349	Oryzias_latipes_hni
ENSORLG00015000659	rbm42	60	94.191	ENSOMEG00000014332	rbm42	97	88.803	Oryzias_melastigma
ENSORLG00015000659	rbm42	100	71.154	ENSPKIG00000015165	rbm42	100	70.361	Paramormyrops_kingsleyae
ENSORLG00015000659	rbm42	96	65.441	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSORLG00015000659	rbm42	52	57.604	ENSPMAG00000008633	rbm42	100	48.257	Petromyzon_marinus
ENSORLG00015000659	rbm42	100	78.676	ENSPFOG00000007701	rbm42	100	78.676	Poecilia_formosa
ENSORLG00015000659	rbm42	100	78.676	ENSPLAG00000009405	rbm42	100	78.676	Poecilia_latipinna
ENSORLG00015000659	rbm42	100	78.676	ENSPMEG00000010375	rbm42	100	78.676	Poecilia_mexicana
ENSORLG00015000659	rbm42	100	78.922	ENSPREG00000018102	rbm42	100	78.922	Poecilia_reticulata
ENSORLG00015000659	rbm42	100	82.716	ENSPNYG00000014460	rbm42	100	82.716	Pundamilia_nyererei
ENSORLG00015000659	rbm42	100	68.046	ENSPNAG00000009961	rbm42	100	70.406	Pygocentrus_nattereri
ENSORLG00015000659	rbm42	100	67.757	ENSSFOG00015019227	rbm42	100	71.429	Scleropages_formosus
ENSORLG00015000659	rbm42	100	79.607	ENSSMAG00000011935	rbm42	100	78.624	Scophthalmus_maximus
ENSORLG00015000659	rbm42	100	84.236	ENSSDUG00000004033	rbm42	100	83.990	Seriola_dumerili
ENSORLG00015000659	rbm42	100	75.186	ENSSLDG00000009918	rbm42	100	87.179	Seriola_lalandi_dorsalis
ENSORLG00015000659	rbm42	100	82.266	ENSSPAG00000019871	rbm42	100	82.266	Stegastes_partitus
ENSORLG00015000659	rbm42	100	76.543	ENSTRUG00000024586	-	76	76.049	Takifugu_rubripes
ENSORLG00015000659	rbm42	99	66.287	ENSTNIG00000011669	rbm42	100	64.920	Tetraodon_nigroviridis
ENSORLG00015000659	rbm42	100	57.991	ENSXETG00000017599	rbm42	100	57.783	Xenopus_tropicalis
ENSORLG00015000659	rbm42	100	78.922	ENSXMAG00000012827	rbm42	100	78.431	Xiphophorus_maculatus