EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015001647 (Gene tree)
Gene ID: -
Gene Symbol: lsm12b
Alias: -
Full Name: LSM12 homolog b
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 9588 bases
Position: chr19:15221550-15231137
Accession: ZDB-GENE-040426-2164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015001053	AD	PF09793.9	2.3e-25	1	1
ENSORLP00015001041	AD	PF09793.9	2.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015013310	-	2595	-	ENSORLP00015001053	213 (aa)	-	-
ENSORLT00015013297	-	3387	-	ENSORLP00015001041	231 (aa)	-	-

Gene Model

Click here to download ENSORLG00015001647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015001647's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015001647	lsm12b	92	85.204	ENSG00000161654	LSM12	100	85.204	Homo_sapiens
ENSORLG00015001647	lsm12b	92	98.469	ENSAPOG00000007907	lsm12b	100	98.469	Acanthochromis_polyacanthus
ENSORLG00015001647	lsm12b	92	83.417	ENSAMEG00000018321	LSM12	100	83.417	Ailuropoda_melanoleuca
ENSORLG00015001647	lsm12b	92	96.939	ENSACIG00000008538	lsm12b	100	96.939	Amphilophus_citrinellus
ENSORLG00015001647	lsm12b	96	98.049	ENSAOCG00000021847	lsm12b	92	98.049	Amphiprion_ocellaris
ENSORLG00015001647	lsm12b	92	97.959	ENSAPEG00000002252	lsm12b	100	97.959	Amphiprion_percula
ENSORLG00015001647	lsm12b	92	97.449	ENSATEG00000005705	lsm12b	100	97.449	Anabas_testudineus
ENSORLG00015001647	lsm12b	92	84.184	ENSACAG00000004618	LSM12	100	84.184	Anolis_carolinensis
ENSORLG00015001647	lsm12b	92	85.204	ENSANAG00000029011	LSM12	100	85.204	Aotus_nancymaae
ENSORLG00015001647	lsm12b	92	97.449	ENSACLG00000026332	lsm12b	100	97.449	Astatotilapia_calliptera
ENSORLG00015001647	lsm12b	92	93.878	ENSAMXG00000032952	lsm12b	100	93.878	Astyanax_mexicanus
ENSORLG00015001647	lsm12b	98	82.692	ENSAMXG00000036117	lsm12a	92	85.787	Astyanax_mexicanus
ENSORLG00015001647	lsm12b	92	85.204	ENSBTAG00000016252	LSM12	100	85.204	Bos_taurus
ENSORLG00015001647	lsm12b	92	85.204	ENSCJAG00000048480	LSM12	100	85.204	Callithrix_jacchus
ENSORLG00015001647	lsm12b	92	85.279	ENSCAFG00000014379	LSM12	92	85.279	Canis_familiaris
ENSORLG00015001647	lsm12b	92	85.204	ENSCAFG00020012173	LSM12	100	85.204	Canis_lupus_dingo
ENSORLG00015001647	lsm12b	92	85.204	ENSCHIG00000018175	LSM12	100	85.204	Capra_hircus
ENSORLG00015001647	lsm12b	92	85.204	ENSTSYG00000036361	LSM12	100	85.204	Carlito_syrichta
ENSORLG00015001647	lsm12b	76	81.481	ENSCAPG00000009647	LSM12	89	81.481	Cavia_aperea
ENSORLG00015001647	lsm12b	92	84.694	ENSCPOG00000012860	LSM12	100	84.694	Cavia_porcellus
ENSORLG00015001647	lsm12b	92	85.204	ENSCCAG00000032905	LSM12	100	85.204	Cebus_capucinus
ENSORLG00015001647	lsm12b	92	85.204	ENSCATG00000030577	-	100	85.204	Cercocebus_atys
ENSORLG00015001647	lsm12b	92	85.204	ENSCLAG00000015759	LSM12	100	85.204	Chinchilla_lanigera
ENSORLG00015001647	lsm12b	92	85.714	ENSCSAG00000003486	LSM12	100	85.714	Chlorocebus_sabaeus
ENSORLG00015001647	lsm12b	51	84.404	ENSCHOG00000001198	LSM12	100	84.404	Choloepus_hoffmanni
ENSORLG00015001647	lsm12b	92	85.714	ENSCPBG00000027105	LSM12	100	85.714	Chrysemys_picta_bellii
ENSORLG00015001647	lsm12b	92	85.204	ENSCANG00000043328	LSM12	100	85.204	Colobus_angolensis_palliatus
ENSORLG00015001647	lsm12b	92	85.204	ENSCGRG00001002094	Lsm12	100	85.204	Cricetulus_griseus_chok1gshd
ENSORLG00015001647	lsm12b	82	77.011	ENSCGRG00000004316	Lsm12	98	77.011	Cricetulus_griseus_crigri
ENSORLG00015001647	lsm12b	92	97.449	ENSCSEG00000008434	lsm12b	100	97.449	Cynoglossus_semilaevis
ENSORLG00015001647	lsm12b	92	96.939	ENSCVAG00000008755	lsm12b	100	96.939	Cyprinodon_variegatus
ENSORLG00015001647	lsm12b	92	94.898	ENSDARG00000109510	lsm12b	100	94.898	Danio_rerio
ENSORLG00015001647	lsm12b	92	86.735	ENSDARG00000028848	lsm12a	100	86.735	Danio_rerio
ENSORLG00015001647	lsm12b	96	83.415	ENSDNOG00000002418	LSM12	99	79.630	Dasypus_novemcinctus
ENSORLG00015001647	lsm12b	92	85.204	ENSDORG00000016381	Lsm12	100	85.204	Dipodomys_ordii
ENSORLG00015001647	lsm12b	76	33.735	FBgn0030364	Lsm12	76	33.735	Drosophila_melanogaster
ENSORLG00015001647	lsm12b	67	32.051	FBgn0036057	CG14164	82	32.051	Drosophila_melanogaster
ENSORLG00015001647	lsm12b	81	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSORLG00015001647	lsm12b	92	84.694	ENSETEG00000008374	LSM12	100	84.694	Echinops_telfairi
ENSORLG00015001647	lsm12b	78	67.665	ENSEBUG00000016299	lsm12a	92	67.665	Eptatretus_burgeri
ENSORLG00015001647	lsm12b	92	85.204	ENSEASG00005010155	LSM12	100	85.204	Equus_asinus_asinus
ENSORLG00015001647	lsm12b	92	85.204	ENSECAG00000009071	LSM12	100	85.204	Equus_caballus
ENSORLG00015001647	lsm12b	72	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSORLG00015001647	lsm12b	96	94.608	ENSELUG00000015538	lsm12b	99	92.925	Esox_lucius
ENSORLG00015001647	lsm12b	92	92.347	ENSELUG00000000256	-	100	92.347	Esox_lucius
ENSORLG00015001647	lsm12b	92	85.204	ENSFCAG00000037021	LSM12	100	85.204	Felis_catus
ENSORLG00015001647	lsm12b	73	81.410	ENSFDAG00000008954	LSM12	91	81.410	Fukomys_damarensis
ENSORLG00015001647	lsm12b	92	95.918	ENSFHEG00000019913	lsm12b	100	95.918	Fundulus_heteroclitus
ENSORLG00015001647	lsm12b	74	96.203	ENSGMOG00000015449	lsm12b	100	96.203	Gadus_morhua
ENSORLG00015001647	lsm12b	72	85.621	ENSGALG00000039803	LSM12	100	85.621	Gallus_gallus
ENSORLG00015001647	lsm12b	92	96.429	ENSGAFG00000011829	lsm12b	100	96.429	Gambusia_affinis
ENSORLG00015001647	lsm12b	74	96.835	ENSGACG00000003428	lsm12b	100	96.835	Gasterosteus_aculeatus
ENSORLG00015001647	lsm12b	92	84.694	ENSGAGG00000021965	LSM12	100	84.694	Gopherus_agassizii
ENSORLG00015001647	lsm12b	92	85.204	ENSGGOG00000010589	-	100	85.204	Gorilla_gorilla
ENSORLG00015001647	lsm12b	78	97.605	ENSHBUG00000007667	lsm12b	74	97.605	Haplochromis_burtoni
ENSORLG00015001647	lsm12b	92	85.204	ENSHGLG00000011411	LSM12	100	85.204	Heterocephalus_glaber_female
ENSORLG00015001647	lsm12b	72	84.416	ENSHGLG00100000241	LSM12	82	84.416	Heterocephalus_glaber_male
ENSORLG00015001647	lsm12b	92	95.408	ENSHCOG00000002094	lsm12b	100	95.408	Hippocampus_comes
ENSORLG00015001647	lsm12b	91	83.505	ENSIPUG00000008936	lsm12a	99	83.505	Ictalurus_punctatus
ENSORLG00015001647	lsm12b	92	93.367	ENSIPUG00000014800	lsm12	100	93.367	Ictalurus_punctatus
ENSORLG00015001647	lsm12b	92	85.204	ENSSTOG00000007403	LSM12	100	85.204	Ictidomys_tridecemlineatus
ENSORLG00015001647	lsm12b	92	84.184	ENSJJAG00000004364	-	100	84.184	Jaculus_jaculus
ENSORLG00015001647	lsm12b	89	75.789	ENSJJAG00000011793	-	100	75.789	Jaculus_jaculus
ENSORLG00015001647	lsm12b	74	73.585	ENSJJAG00000014652	-	95	73.585	Jaculus_jaculus
ENSORLG00015001647	lsm12b	78	97.006	ENSKMAG00000007704	lsm12b	56	97.006	Kryptolebias_marmoratus
ENSORLG00015001647	lsm12b	92	97.959	ENSLBEG00000027999	lsm12b	100	97.959	Labrus_bergylta
ENSORLG00015001647	lsm12b	92	87.755	ENSLACG00000015981	LSM12	100	87.755	Latimeria_chalumnae
ENSORLG00015001647	lsm12b	92	91.371	ENSLOCG00000013079	lsm12b	100	91.371	Lepisosteus_oculatus
ENSORLG00015001647	lsm12b	92	85.204	ENSLAFG00000005202	LSM12	100	85.204	Loxodonta_africana
ENSORLG00015001647	lsm12b	92	85.204	ENSMFAG00000031376	LSM12	100	85.204	Macaca_fascicularis
ENSORLG00015001647	lsm12b	92	85.204	ENSMMUG00000006804	LSM12	100	85.204	Macaca_mulatta
ENSORLG00015001647	lsm12b	60	72.414	ENSMMUG00000042106	-	100	72.414	Macaca_mulatta
ENSORLG00015001647	lsm12b	92	85.204	ENSMNEG00000030594	-	100	85.204	Macaca_nemestrina
ENSORLG00015001647	lsm12b	92	85.204	ENSMLEG00000039934	LSM12	100	85.204	Mandrillus_leucophaeus
ENSORLG00015001647	lsm12b	92	97.449	ENSMAMG00000004279	lsm12b	100	97.449	Mastacembelus_armatus
ENSORLG00015001647	lsm12b	92	97.449	ENSMZEG00005005754	lsm12b	100	97.449	Maylandia_zebra
ENSORLG00015001647	lsm12b	92	85.714	ENSMICG00000037219	LSM12	100	85.714	Microcebus_murinus
ENSORLG00015001647	lsm12b	92	85.204	ENSMOCG00000019878	-	100	85.204	Microtus_ochrogaster
ENSORLG00015001647	lsm12b	95	71.287	ENSMOCG00000017015	-	89	71.287	Microtus_ochrogaster
ENSORLG00015001647	lsm12b	92	97.449	ENSMMOG00000020848	lsm12b	100	97.449	Mola_mola
ENSORLG00015001647	lsm12b	92	97.449	ENSMALG00000007578	lsm12b	100	97.449	Monopterus_albus
ENSORLG00015001647	lsm12b	92	84.694	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.694	Mus_caroli
ENSORLG00015001647	lsm12b	92	85.204	ENSMUSG00000020922	Lsm12	100	85.204	Mus_musculus
ENSORLG00015001647	lsm12b	92	78.404	MGP_PahariEiJ_G0018371	Lsm12	100	84.545	Mus_pahari
ENSORLG00015001647	lsm12b	92	84.694	MGP_SPRETEiJ_G0018084	Lsm12	100	84.694	Mus_spretus
ENSORLG00015001647	lsm12b	92	85.714	ENSMLUG00000006391	LSM12	100	85.714	Myotis_lucifugus
ENSORLG00015001647	lsm12b	92	85.204	ENSNGAG00000001870	Lsm12	100	85.204	Nannospalax_galili
ENSORLG00015001647	lsm12b	92	58.621	ENSNGAG00000015429	-	100	58.621	Nannospalax_galili
ENSORLG00015001647	lsm12b	92	97.449	ENSNBRG00000006266	lsm12b	100	97.449	Neolamprologus_brichardi
ENSORLG00015001647	lsm12b	92	85.204	ENSNLEG00000005580	-	100	85.204	Nomascus_leucogenys
ENSORLG00015001647	lsm12b	78	85.542	ENSMEUG00000007501	-	100	85.542	Notamacropus_eugenii
ENSORLG00015001647	lsm12b	92	85.204	ENSOPRG00000008552	LSM12	100	85.204	Ochotona_princeps
ENSORLG00015001647	lsm12b	91	85.052	ENSODEG00000017998	-	99	85.052	Octodon_degus
ENSORLG00015001647	lsm12b	92	77.551	ENSODEG00000007886	-	74	77.551	Octodon_degus
ENSORLG00015001647	lsm12b	92	97.449	ENSONIG00000007933	lsm12b	100	97.449	Oreochromis_niloticus
ENSORLG00015001647	lsm12b	92	83.417	ENSOCUG00000008566	-	100	83.417	Oryctolagus_cuniculus
ENSORLG00015001647	lsm12b	92	78.974	ENSOCUG00000024823	-	100	78.974	Oryctolagus_cuniculus
ENSORLG00015001647	lsm12b	92	79.487	ENSOCUG00000027889	-	100	79.487	Oryctolagus_cuniculus
ENSORLG00015001647	lsm12b	92	80.000	ENSOCUG00000021254	-	100	80.000	Oryctolagus_cuniculus
ENSORLG00015001647	lsm12b	92	100.000	ENSORLG00000011310	lsm12b	100	100.000	Oryzias_latipes
ENSORLG00015001647	lsm12b	100	100.000	ENSORLG00020002060	lsm12b	100	100.000	Oryzias_latipes_hni
ENSORLG00015001647	lsm12b	100	97.664	ENSOMEG00000006184	lsm12b	100	97.664	Oryzias_melastigma
ENSORLG00015001647	lsm12b	92	85.714	ENSOGAG00000010489	LSM12	100	85.714	Otolemur_garnettii
ENSORLG00015001647	lsm12b	92	82.178	ENSOARG00000006589	LSM12	100	82.178	Ovis_aries
ENSORLG00015001647	lsm12b	92	75.510	ENSPPAG00000034974	-	100	75.510	Pan_paniscus
ENSORLG00015001647	lsm12b	92	85.204	ENSPPRG00000023420	LSM12	100	85.204	Panthera_pardus
ENSORLG00015001647	lsm12b	67	82.727	ENSPTIG00000014850	-	100	82.727	Panthera_tigris_altaica
ENSORLG00015001647	lsm12b	72	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSORLG00015001647	lsm12b	92	85.204	ENSPTRG00000009261	LSM12	100	85.204	Pan_troglodytes
ENSORLG00015001647	lsm12b	92	85.204	ENSPANG00000021315	-	100	85.204	Papio_anubis
ENSORLG00015001647	lsm12b	92	84.184	ENSPKIG00000017932	-	100	84.184	Paramormyrops_kingsleyae
ENSORLG00015001647	lsm12b	92	93.367	ENSPKIG00000021058	lsm12b	100	93.367	Paramormyrops_kingsleyae
ENSORLG00015001647	lsm12b	92	97.449	ENSPMGG00000021344	lsm12b	100	97.449	Periophthalmus_magnuspinnatus
ENSORLG00015001647	lsm12b	92	85.204	ENSPEMG00000012199	Lsm12	100	85.204	Peromyscus_maniculatus_bairdii
ENSORLG00015001647	lsm12b	82	67.429	ENSPMAG00000005461	lsm12a	99	67.429	Petromyzon_marinus
ENSORLG00015001647	lsm12b	92	85.204	ENSPCIG00000020244	LSM12	100	85.204	Phascolarctos_cinereus
ENSORLG00015001647	lsm12b	92	95.408	ENSPFOG00000015930	lsm12b	100	95.408	Poecilia_formosa
ENSORLG00015001647	lsm12b	92	95.408	ENSPLAG00000021089	lsm12b	100	95.408	Poecilia_latipinna
ENSORLG00015001647	lsm12b	92	95.408	ENSPMEG00000012961	lsm12b	100	95.408	Poecilia_mexicana
ENSORLG00015001647	lsm12b	80	96.491	ENSPREG00000010236	lsm12b	95	96.491	Poecilia_reticulata
ENSORLG00015001647	lsm12b	92	85.204	ENSPPYG00000008344	LSM12	100	85.204	Pongo_abelii
ENSORLG00015001647	lsm12b	75	86.164	ENSPCAG00000008790	LSM12	100	86.164	Procavia_capensis
ENSORLG00015001647	lsm12b	92	85.204	ENSPCOG00000027951	LSM12	100	85.204	Propithecus_coquereli
ENSORLG00015001647	lsm12b	92	84.694	ENSPVAG00000013706	LSM12	100	84.694	Pteropus_vampyrus
ENSORLG00015001647	lsm12b	92	97.449	ENSPNYG00000003386	lsm12b	100	97.449	Pundamilia_nyererei
ENSORLG00015001647	lsm12b	92	84.694	ENSPNAG00000018435	lsm12a	100	84.694	Pygocentrus_nattereri
ENSORLG00015001647	lsm12b	92	92.857	ENSPNAG00000004186	lsm12b	100	92.857	Pygocentrus_nattereri
ENSORLG00015001647	lsm12b	92	85.204	ENSRNOG00000020894	Lsm12	100	85.204	Rattus_norvegicus
ENSORLG00015001647	lsm12b	92	85.204	ENSRBIG00000027910	LSM12	100	85.204	Rhinopithecus_bieti
ENSORLG00015001647	lsm12b	90	52.880	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSORLG00015001647	lsm12b	92	85.204	ENSRROG00000045530	-	100	85.204	Rhinopithecus_roxellana
ENSORLG00015001647	lsm12b	92	85.204	ENSSBOG00000025310	LSM12	100	85.204	Saimiri_boliviensis_boliviensis
ENSORLG00015001647	lsm12b	74	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSORLG00015001647	lsm12b	92	94.898	ENSSFOG00015009612	lsm12	100	94.898	Scleropages_formosus
ENSORLG00015001647	lsm12b	92	94.388	ENSSFOG00015020392	lsm12a	100	94.388	Scleropages_formosus
ENSORLG00015001647	lsm12b	92	97.449	ENSSMAG00000008089	lsm12b	100	97.449	Scophthalmus_maximus
ENSORLG00015001647	lsm12b	92	97.449	ENSSDUG00000012711	lsm12b	100	97.449	Seriola_dumerili
ENSORLG00015001647	lsm12b	92	97.449	ENSSLDG00000007404	lsm12b	100	97.449	Seriola_lalandi_dorsalis
ENSORLG00015001647	lsm12b	72	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSORLG00015001647	lsm12b	92	85.714	ENSSPUG00000011984	LSM12	100	85.714	Sphenodon_punctatus
ENSORLG00015001647	lsm12b	92	97.959	ENSSPAG00000017058	lsm12b	100	97.959	Stegastes_partitus
ENSORLG00015001647	lsm12b	92	85.204	ENSSSCG00000032394	LSM12	100	85.204	Sus_scrofa
ENSORLG00015001647	lsm12b	92	96.429	ENSTRUG00000007121	lsm12b	100	96.429	Takifugu_rubripes
ENSORLG00015001647	lsm12b	92	97.449	ENSTNIG00000014436	lsm12b	100	97.449	Tetraodon_nigroviridis
ENSORLG00015001647	lsm12b	92	82.653	ENSTBEG00000012392	-	100	82.653	Tupaia_belangeri
ENSORLG00015001647	lsm12b	92	84.694	ENSTBEG00000012523	-	100	84.694	Tupaia_belangeri
ENSORLG00015001647	lsm12b	92	85.204	ENSTTRG00000010433	LSM12	100	85.204	Tursiops_truncatus
ENSORLG00015001647	lsm12b	92	85.204	ENSUAMG00000006313	LSM12	100	85.204	Ursus_americanus
ENSORLG00015001647	lsm12b	74	82.278	ENSUMAG00000012987	LSM12	90	82.278	Ursus_maritimus
ENSORLG00015001647	lsm12b	92	80.612	ENSVPAG00000011145	LSM12	100	80.612	Vicugna_pacos
ENSORLG00015001647	lsm12b	92	85.204	ENSVVUG00000017581	LSM12	100	85.204	Vulpes_vulpes
ENSORLG00015001647	lsm12b	75	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSORLG00015001647	lsm12b	92	96.429	ENSXCOG00000003994	lsm12b	100	96.429	Xiphophorus_couchianus
ENSORLG00015001647	lsm12b	92	96.429	ENSXMAG00000020950	lsm12b	100	96.429	Xiphophorus_maculatus