EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015001759 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 8871 bases
Position: chr21:387304-396174
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015001146	SF3b1	PF08920.10	2.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015013139	-	2565	-	ENSORLP00015001146	854 (aa)	-	-

Gene Model

Click here to download ENSORLG00015001759's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015001759's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015001759	sf3b1	98	90.952	ENSG00000115524	SF3B1	100	82.051	Homo_sapiens
ENSORLG00015001759	sf3b1	98	96.445	ENSAPOG00000011894	sf3b1	67	96.445	Acanthochromis_polyacanthus
ENSORLG00015001759	sf3b1	97	90.745	ENSAMEG00000013809	SF3B1	63	90.745	Ailuropoda_melanoleuca
ENSORLG00015001759	sf3b1	98	95.471	ENSACIG00000020910	sf3b1	62	95.471	Amphilophus_citrinellus
ENSORLG00015001759	sf3b1	98	96.445	ENSAOCG00000004478	sf3b1	64	96.445	Amphiprion_ocellaris
ENSORLG00015001759	sf3b1	98	96.445	ENSAPEG00000012937	sf3b1	64	96.445	Amphiprion_percula
ENSORLG00015001759	sf3b1	98	96.441	ENSATEG00000020435	sf3b1	64	96.441	Anabas_testudineus
ENSORLG00015001759	sf3b1	97	91.074	ENSAPLG00000003993	SF3B1	63	91.074	Anas_platyrhynchos
ENSORLG00015001759	sf3b1	98	90.822	ENSACAG00000009612	SF3B1	64	90.822	Anolis_carolinensis
ENSORLG00015001759	sf3b1	98	90.952	ENSANAG00000021577	SF3B1	64	90.952	Aotus_nancymaae
ENSORLG00015001759	sf3b1	98	95.018	ENSACLG00000023470	sf3b1	64	95.018	Astatotilapia_calliptera
ENSORLG00015001759	sf3b1	98	94.083	ENSAMXG00000002219	sf3b1	64	94.083	Astyanax_mexicanus
ENSORLG00015001759	sf3b1	98	90.952	ENSBTAG00000008915	SF3B1	64	90.952	Bos_taurus
ENSORLG00015001759	sf3b1	95	58.372	WBGene00011605	sftb-1	62	58.488	Caenorhabditis_elegans
ENSORLG00015001759	sf3b1	98	90.952	ENSCJAG00000003902	SF3B1	64	90.952	Callithrix_jacchus
ENSORLG00015001759	sf3b1	98	90.952	ENSCAFG00000010826	SF3B1	64	90.952	Canis_familiaris
ENSORLG00015001759	sf3b1	98	90.952	ENSCAFG00020004750	SF3B1	64	90.952	Canis_lupus_dingo
ENSORLG00015001759	sf3b1	98	90.952	ENSCHIG00000015226	SF3B1	64	90.952	Capra_hircus
ENSORLG00015001759	sf3b1	98	90.952	ENSTSYG00000009214	SF3B1	64	90.952	Carlito_syrichta
ENSORLG00015001759	sf3b1	97	90.670	ENSCAPG00000006547	SF3B1	63	90.670	Cavia_aperea
ENSORLG00015001759	sf3b1	97	90.843	ENSCPOG00000009353	SF3B1	64	90.843	Cavia_porcellus
ENSORLG00015001759	sf3b1	98	90.952	ENSCCAG00000020506	SF3B1	64	90.952	Cebus_capucinus
ENSORLG00015001759	sf3b1	98	90.952	ENSCATG00000035735	SF3B1	64	90.952	Cercocebus_atys
ENSORLG00015001759	sf3b1	97	90.854	ENSCLAG00000014767	SF3B1	63	90.854	Chinchilla_lanigera
ENSORLG00015001759	sf3b1	98	90.952	ENSCSAG00000011505	SF3B1	64	90.952	Chlorocebus_sabaeus
ENSORLG00015001759	sf3b1	98	91.169	ENSCPBG00000021902	SF3B1	74	91.169	Chrysemys_picta_bellii
ENSORLG00015001759	sf3b1	91	77.440	ENSCING00000002558	-	85	77.835	Ciona_intestinalis
ENSORLG00015001759	sf3b1	98	75.850	ENSCSAVG00000002559	-	64	75.850	Ciona_savignyi
ENSORLG00015001759	sf3b1	98	90.952	ENSCANG00000029415	SF3B1	64	90.952	Colobus_angolensis_palliatus
ENSORLG00015001759	sf3b1	98	90.952	ENSCGRG00001016990	Sf3b1	64	90.952	Cricetulus_griseus_chok1gshd
ENSORLG00015001759	sf3b1	98	90.952	ENSCGRG00000005301	Sf3b1	64	90.952	Cricetulus_griseus_crigri
ENSORLG00015001759	sf3b1	98	90.107	ENSCSEG00000003860	sf3b1	64	90.107	Cynoglossus_semilaevis
ENSORLG00015001759	sf3b1	98	96.564	ENSCVAG00000003680	sf3b1	67	96.564	Cyprinodon_variegatus
ENSORLG00015001759	sf3b1	98	93.128	ENSDARG00000056138	sf3b1	64	93.128	Danio_rerio
ENSORLG00015001759	sf3b1	98	90.844	ENSDNOG00000011754	SF3B1	64	90.844	Dasypus_novemcinctus
ENSORLG00015001759	sf3b1	97	87.952	ENSDORG00000002399	Sf3b1	63	87.831	Dipodomys_ordii
ENSORLG00015001759	sf3b1	98	68.919	FBgn0031266	Sf3b1	65	68.919	Drosophila_melanogaster
ENSORLG00015001759	sf3b1	97	90.482	ENSETEG00000009188	SF3B1	76	90.482	Echinops_telfairi
ENSORLG00015001759	sf3b1	97	81.862	ENSEBUG00000004325	sf3b1	62	82.275	Eptatretus_burgeri
ENSORLG00015001759	sf3b1	98	90.952	ENSEASG00005020159	SF3B1	62	90.952	Equus_asinus_asinus
ENSORLG00015001759	sf3b1	98	90.952	ENSECAG00000021657	SF3B1	62	90.952	Equus_caballus
ENSORLG00015001759	sf3b1	78	80.886	ENSEEUG00000000836	SF3B1	51	80.886	Erinaceus_europaeus
ENSORLG00015001759	sf3b1	98	92.849	ENSELUG00000005977	sf3b1	63	92.849	Esox_lucius
ENSORLG00015001759	sf3b1	98	90.952	ENSFCAG00000005038	SF3B1	64	90.952	Felis_catus
ENSORLG00015001759	sf3b1	97	91.074	ENSFALG00000004281	SF3B1	63	91.074	Ficedula_albicollis
ENSORLG00015001759	sf3b1	98	90.952	ENSFDAG00000017510	SF3B1	64	90.952	Fukomys_damarensis
ENSORLG00015001759	sf3b1	98	96.090	ENSFHEG00000014333	sf3b1	64	96.090	Fundulus_heteroclitus
ENSORLG00015001759	sf3b1	98	93.230	ENSGMOG00000006773	sf3b1	64	93.230	Gadus_morhua
ENSORLG00015001759	sf3b1	98	91.169	ENSGALG00000008038	SF3B1	64	91.169	Gallus_gallus
ENSORLG00015001759	sf3b1	96	96.481	ENSGAFG00000000704	sf3b1	64	96.481	Gambusia_affinis
ENSORLG00015001759	sf3b1	98	94.768	ENSGACG00000008839	sf3b1	64	94.768	Gasterosteus_aculeatus
ENSORLG00015001759	sf3b1	98	90.201	ENSGAGG00000017478	SF3B1	64	90.201	Gopherus_agassizii
ENSORLG00015001759	sf3b1	98	82.515	ENSGGOG00000009264	SF3B1	63	82.854	Gorilla_gorilla
ENSORLG00015001759	sf3b1	98	95.018	ENSHBUG00000007705	sf3b1	64	95.018	Haplochromis_burtoni
ENSORLG00015001759	sf3b1	97	90.854	ENSHGLG00000008285	-	63	90.854	Heterocephalus_glaber_female
ENSORLG00015001759	sf3b1	97	90.493	ENSHGLG00100005535	-	64	90.493	Heterocephalus_glaber_male
ENSORLG00015001759	sf3b1	98	94.712	ENSHCOG00000016775	sf3b1	64	94.712	Hippocampus_comes
ENSORLG00015001759	sf3b1	98	93.957	ENSIPUG00000013171	sf3b1	64	93.957	Ictalurus_punctatus
ENSORLG00015001759	sf3b1	98	90.952	ENSSTOG00000011034	SF3B1	64	90.952	Ictidomys_tridecemlineatus
ENSORLG00015001759	sf3b1	96	90.799	ENSJJAG00000010903	Sf3b1	63	90.799	Jaculus_jaculus
ENSORLG00015001759	sf3b1	98	94.923	ENSKMAG00000004009	sf3b1	64	94.923	Kryptolebias_marmoratus
ENSORLG00015001759	sf3b1	98	95.346	ENSLBEG00000022208	sf3b1	64	95.346	Labrus_bergylta
ENSORLG00015001759	sf3b1	92	89.837	ENSLACG00000014832	SF3B1	60	89.837	Latimeria_chalumnae
ENSORLG00015001759	sf3b1	98	92.671	ENSLOCG00000003899	sf3b1	64	92.671	Lepisosteus_oculatus
ENSORLG00015001759	sf3b1	98	90.952	ENSLAFG00000001956	SF3B1	64	90.952	Loxodonta_africana
ENSORLG00015001759	sf3b1	97	90.854	ENSMMUG00000022430	SF3B1	63	90.854	Macaca_mulatta
ENSORLG00015001759	sf3b1	98	90.952	ENSMNEG00000042333	SF3B1	64	90.952	Macaca_nemestrina
ENSORLG00015001759	sf3b1	89	83.290	ENSMLEG00000026141	SF3B1	59	84.121	Mandrillus_leucophaeus
ENSORLG00015001759	sf3b1	98	96.441	ENSMAMG00000010241	sf3b1	64	96.441	Mastacembelus_armatus
ENSORLG00015001759	sf3b1	98	95.018	ENSMZEG00005021254	sf3b1	64	95.018	Maylandia_zebra
ENSORLG00015001759	sf3b1	97	90.229	ENSMGAG00000007017	SF3B1	63	90.229	Meleagris_gallopavo
ENSORLG00015001759	sf3b1	98	90.952	ENSMAUG00000009071	Sf3b1	67	90.952	Mesocricetus_auratus
ENSORLG00015001759	sf3b1	98	90.952	ENSMICG00000013879	SF3B1	64	90.952	Microcebus_murinus
ENSORLG00015001759	sf3b1	97	83.894	ENSMOCG00000000455	Sf3b1	62	83.894	Microtus_ochrogaster
ENSORLG00015001759	sf3b1	98	96.181	ENSMMOG00000000475	sf3b1	77	96.181	Mola_mola
ENSORLG00015001759	sf3b1	98	90.119	ENSMODG00000012275	SF3B1	64	90.119	Monodelphis_domestica
ENSORLG00015001759	sf3b1	98	96.323	ENSMALG00000017211	sf3b1	64	96.323	Monopterus_albus
ENSORLG00015001759	sf3b1	98	90.952	MGP_CAROLIEiJ_G0014141	Sf3b1	64	90.952	Mus_caroli
ENSORLG00015001759	sf3b1	98	90.952	ENSMUSG00000025982	Sf3b1	64	90.952	Mus_musculus
ENSORLG00015001759	sf3b1	98	90.952	MGP_SPRETEiJ_G0014947	Sf3b1	64	90.952	Mus_spretus
ENSORLG00015001759	sf3b1	98	90.952	ENSMPUG00000007799	SF3B1	64	90.952	Mustela_putorius_furo
ENSORLG00015001759	sf3b1	98	90.952	ENSMLUG00000000840	SF3B1	64	90.952	Myotis_lucifugus
ENSORLG00015001759	sf3b1	98	90.431	ENSNGAG00000021884	-	64	90.431	Nannospalax_galili
ENSORLG00015001759	sf3b1	98	88.452	ENSNBRG00000015816	sf3b1	63	88.452	Neolamprologus_brichardi
ENSORLG00015001759	sf3b1	98	90.952	ENSNLEG00000006861	SF3B1	64	90.952	Nomascus_leucogenys
ENSORLG00015001759	sf3b1	93	78.329	ENSOPRG00000008596	SF3B1	61	79.630	Ochotona_princeps
ENSORLG00015001759	sf3b1	98	90.952	ENSODEG00000011153	-	64	90.952	Octodon_degus
ENSORLG00015001759	sf3b1	98	95.018	ENSONIG00000013758	sf3b1	64	95.018	Oreochromis_niloticus
ENSORLG00015001759	sf3b1	72	93.801	ENSOCUG00000012722	-	54	93.801	Oryctolagus_cuniculus
ENSORLG00015001759	sf3b1	98	99.170	ENSORLG00000020219	sf3b1	64	99.170	Oryzias_latipes
ENSORLG00015001759	sf3b1	98	99.170	ENSORLG00020001746	sf3b1	64	99.170	Oryzias_latipes_hni
ENSORLG00015001759	sf3b1	98	98.223	ENSOMEG00000019231	sf3b1	64	98.223	Oryzias_melastigma
ENSORLG00015001759	sf3b1	75	73.791	ENSOGAG00000000267	-	100	73.791	Otolemur_garnettii
ENSORLG00015001759	sf3b1	98	90.952	ENSOARG00000015374	SF3B1	64	90.952	Ovis_aries
ENSORLG00015001759	sf3b1	98	90.952	ENSPPAG00000035007	SF3B1	64	90.952	Pan_paniscus
ENSORLG00015001759	sf3b1	98	90.952	ENSPPRG00000009090	SF3B1	64	90.952	Panthera_pardus
ENSORLG00015001759	sf3b1	98	90.952	ENSPTIG00000021557	SF3B1	64	90.952	Panthera_tigris_altaica
ENSORLG00015001759	sf3b1	97	79.616	ENSPTRG00000012771	SF3B1	62	79.616	Pan_troglodytes
ENSORLG00015001759	sf3b1	98	90.952	ENSPANG00000013417	SF3B1	64	90.952	Papio_anubis
ENSORLG00015001759	sf3b1	98	94.299	ENSPKIG00000000784	sf3b1	64	94.299	Paramormyrops_kingsleyae
ENSORLG00015001759	sf3b1	97	89.251	ENSPSIG00000017222	SF3B1	62	89.251	Pelodiscus_sinensis
ENSORLG00015001759	sf3b1	98	95.709	ENSPMGG00000004330	sf3b1	70	95.709	Periophthalmus_magnuspinnatus
ENSORLG00015001759	sf3b1	97	90.854	ENSPEMG00000010699	Sf3b1	64	90.854	Peromyscus_maniculatus_bairdii
ENSORLG00015001759	sf3b1	98	85.714	ENSPMAG00000001311	sf3b1	64	86.187	Petromyzon_marinus
ENSORLG00015001759	sf3b1	98	90.238	ENSPCIG00000010642	SF3B1	66	90.238	Phascolarctos_cinereus
ENSORLG00015001759	sf3b1	98	96.686	ENSPFOG00000000073	sf3b1	64	96.686	Poecilia_formosa
ENSORLG00015001759	sf3b1	98	96.682	ENSPLAG00000002293	sf3b1	64	96.682	Poecilia_latipinna
ENSORLG00015001759	sf3b1	98	96.801	ENSPMEG00000000446	sf3b1	63	96.801	Poecilia_mexicana
ENSORLG00015001759	sf3b1	98	96.801	ENSPREG00000019652	sf3b1	64	96.801	Poecilia_reticulata
ENSORLG00015001759	sf3b1	81	95.425	ENSPPYG00000013044	SF3B1	59	95.425	Pongo_abelii
ENSORLG00015001759	sf3b1	98	90.952	ENSPCAG00000009292	SF3B1	64	90.952	Procavia_capensis
ENSORLG00015001759	sf3b1	98	90.952	ENSPCOG00000024074	SF3B1	64	90.952	Propithecus_coquereli
ENSORLG00015001759	sf3b1	98	90.952	ENSPVAG00000008302	SF3B1	64	90.952	Pteropus_vampyrus
ENSORLG00015001759	sf3b1	98	94.899	ENSPNYG00000014939	sf3b1	64	94.899	Pundamilia_nyererei
ENSORLG00015001759	sf3b1	98	93.846	ENSPNAG00000008288	sf3b1	64	93.846	Pygocentrus_nattereri
ENSORLG00015001759	sf3b1	98	90.952	ENSRNOG00000013516	Sf3b1	64	90.952	Rattus_norvegicus
ENSORLG00015001759	sf3b1	93	89.084	ENSRBIG00000026096	SF3B1	62	89.084	Rhinopithecus_bieti
ENSORLG00015001759	sf3b1	98	90.952	ENSRROG00000031308	SF3B1	64	90.952	Rhinopithecus_roxellana
ENSORLG00015001759	sf3b1	98	90.952	ENSSBOG00000020080	SF3B1	64	90.952	Saimiri_boliviensis_boliviensis
ENSORLG00015001759	sf3b1	98	90.119	ENSSHAG00000017564	SF3B1	64	90.119	Sarcophilus_harrisii
ENSORLG00015001759	sf3b1	98	94.076	ENSSFOG00015021535	sf3b1	64	94.076	Scleropages_formosus
ENSORLG00015001759	sf3b1	98	95.176	ENSSMAG00000013977	sf3b1	64	95.176	Scophthalmus_maximus
ENSORLG00015001759	sf3b1	98	96.323	ENSSDUG00000017422	sf3b1	64	96.323	Seriola_dumerili
ENSORLG00015001759	sf3b1	98	96.204	ENSSLDG00000019495	sf3b1	64	96.204	Seriola_lalandi_dorsalis
ENSORLG00015001759	sf3b1	98	91.050	ENSSPUG00000000410	SF3B1	64	91.050	Sphenodon_punctatus
ENSORLG00015001759	sf3b1	98	96.679	ENSSPAG00000010451	sf3b1	63	96.679	Stegastes_partitus
ENSORLG00015001759	sf3b1	98	90.952	ENSSSCG00000016075	SF3B1	76	90.952	Sus_scrofa
ENSORLG00015001759	sf3b1	98	91.169	ENSTGUG00000010553	SF3B1	64	91.169	Taeniopygia_guttata
ENSORLG00015001759	sf3b1	98	94.899	ENSTRUG00000015534	sf3b1	64	94.899	Takifugu_rubripes
ENSORLG00015001759	sf3b1	88	94.935	ENSTBEG00000008714	SF3B1	63	94.935	Tupaia_belangeri
ENSORLG00015001759	sf3b1	86	99.688	ENSTTRG00000003414	SF3B1	56	99.688	Tursiops_truncatus
ENSORLG00015001759	sf3b1	79	77.712	ENSUAMG00000018506	SF3B1	93	77.712	Ursus_americanus
ENSORLG00015001759	sf3b1	98	90.952	ENSUMAG00000020945	SF3B1	64	90.952	Ursus_maritimus
ENSORLG00015001759	sf3b1	91	88.809	ENSVPAG00000005798	SF3B1	59	88.809	Vicugna_pacos
ENSORLG00015001759	sf3b1	98	90.952	ENSVVUG00000025948	SF3B1	60	90.952	Vulpes_vulpes
ENSORLG00015001759	sf3b1	98	88.690	ENSXETG00000013339	sf3b1	64	88.690	Xenopus_tropicalis
ENSORLG00015001759	sf3b1	98	90.357	ENSXCOG00000018086	sf3b1	63	90.833	Xiphophorus_couchianus
ENSORLG00015001759	sf3b1	98	96.801	ENSXMAG00000007369	sf3b1	65	96.801	Xiphophorus_maculatus