EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015002179 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: -
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 19958 bases
Position: chr20:12353307-12373264
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015001555	RRM_1	PF00076.22	5.2e-15	1	2
ENSORLP00015001555	RRM_1	PF00076.22	5.2e-15	2	2
ENSORLP00015022674	RRM_1	PF00076.22	5.2e-15	1	2
ENSORLP00015022674	RRM_1	PF00076.22	5.2e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015012457	-	6680	-	ENSORLP00015001555	500 (aa)	-	-
ENSORLT00015012427	-	6964	-	ENSORLP00015022674	500 (aa)	-	-

Gene Model

Click here to download ENSORLG00015002179's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015002179's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015002179	rnpc3	97	52.446	ENSG00000185946	RNPC3	96	54.135	Homo_sapiens
ENSORLG00015002179	rnpc3	100	77.336	ENSAPOG00000017371	rnpc3	100	77.336	Acanthochromis_polyacanthus
ENSORLG00015002179	rnpc3	97	52.437	ENSAMEG00000001694	RNPC3	95	54.125	Ailuropoda_melanoleuca
ENSORLG00015002179	rnpc3	99	72.353	ENSACIG00000021043	rnpc3	99	72.353	Amphilophus_citrinellus
ENSORLG00015002179	rnpc3	100	76.863	ENSAOCG00000014052	rnpc3	98	76.863	Amphiprion_ocellaris
ENSORLG00015002179	rnpc3	100	76.471	ENSAPEG00000008739	rnpc3	98	76.471	Amphiprion_percula
ENSORLG00015002179	rnpc3	100	75.775	ENSATEG00000021263	rnpc3	100	75.775	Anabas_testudineus
ENSORLG00015002179	rnpc3	89	54.444	ENSAPLG00000015605	RNPC3	99	54.444	Anas_platyrhynchos
ENSORLG00015002179	rnpc3	95	55.208	ENSACAG00000002029	RNPC3	96	54.582	Anolis_carolinensis
ENSORLG00015002179	rnpc3	97	51.751	ENSANAG00000019950	RNPC3	95	53.373	Aotus_nancymaae
ENSORLG00015002179	rnpc3	99	76.861	ENSACLG00000014702	rnpc3	99	76.861	Astatotilapia_calliptera
ENSORLG00015002179	rnpc3	100	64.062	ENSAMXG00000033372	rnpc3	100	63.867	Astyanax_mexicanus
ENSORLG00015002179	rnpc3	97	53.678	ENSBTAG00000019091	RNPC3	95	53.678	Bos_taurus
ENSORLG00015002179	rnpc3	97	53.644	ENSCJAG00000035686	RNPC3	95	55.061	Callithrix_jacchus
ENSORLG00015002179	rnpc3	97	52.148	ENSCAFG00000019972	RNPC3	95	53.831	Canis_familiaris
ENSORLG00015002179	rnpc3	97	52.148	ENSCAFG00020011300	RNPC3	95	53.831	Canis_lupus_dingo
ENSORLG00015002179	rnpc3	97	54.257	ENSCHIG00000020361	RNPC3	95	53.373	Capra_hircus
ENSORLG00015002179	rnpc3	97	54.435	ENSTSYG00000030256	RNPC3	95	54.435	Carlito_syrichta
ENSORLG00015002179	rnpc3	86	47.032	ENSCAPG00000013600	RNPC3	97	47.454	Cavia_aperea
ENSORLG00015002179	rnpc3	97	54.637	ENSCPOG00000031638	RNPC3	95	53.535	Cavia_porcellus
ENSORLG00015002179	rnpc3	97	53.213	ENSCCAG00000024301	RNPC3	95	53.213	Cebus_capucinus
ENSORLG00015002179	rnpc3	97	43.326	ENSCATG00000035930	-	52	49.372	Cercocebus_atys
ENSORLG00015002179	rnpc3	97	54.032	ENSCATG00000002086	RNPC3	95	54.032	Cercocebus_atys
ENSORLG00015002179	rnpc3	97	53.939	ENSCLAG00000005169	RNPC3	95	54.343	Chinchilla_lanigera
ENSORLG00015002179	rnpc3	97	52.344	ENSCSAG00000001519	RNPC3	95	54.032	Chlorocebus_sabaeus
ENSORLG00015002179	rnpc3	97	56.008	ENSCPBG00000028311	RNPC3	95	56.212	Chrysemys_picta_bellii
ENSORLG00015002179	rnpc3	61	55.556	ENSCSAVG00000002800	-	74	55.556	Ciona_savignyi
ENSORLG00015002179	rnpc3	97	53.629	ENSCANG00000031444	RNPC3	95	53.629	Colobus_angolensis_palliatus
ENSORLG00015002179	rnpc3	96	54.361	ENSCGRG00001019276	Rnpc3	95	53.049	Cricetulus_griseus_chok1gshd
ENSORLG00015002179	rnpc3	89	52.747	ENSCGRG00000000053	Rnpc3	99	51.322	Cricetulus_griseus_crigri
ENSORLG00015002179	rnpc3	99	75.050	ENSCSEG00000013475	rnpc3	97	76.074	Cynoglossus_semilaevis
ENSORLG00015002179	rnpc3	100	78.405	ENSCVAG00000002645	rnpc3	100	78.405	Cyprinodon_variegatus
ENSORLG00015002179	rnpc3	99	64.637	ENSDARG00000011247	rnpc3	99	65.226	Danio_rerio
ENSORLG00015002179	rnpc3	97	53.012	ENSDNOG00000044555	-	95	52.811	Dasypus_novemcinctus
ENSORLG00015002179	rnpc3	97	53.414	ENSDNOG00000047498	-	95	53.213	Dasypus_novemcinctus
ENSORLG00015002179	rnpc3	97	51.556	ENSDORG00000027343	Rnpc3	95	53.213	Dipodomys_ordii
ENSORLG00015002179	rnpc3	97	49.608	ENSEBUG00000002068	rnpc3	97	49.705	Eptatretus_burgeri
ENSORLG00015002179	rnpc3	97	54.234	ENSEASG00005015957	RNPC3	95	54.234	Equus_asinus_asinus
ENSORLG00015002179	rnpc3	97	54.234	ENSECAG00000021148	RNPC3	95	54.234	Equus_caballus
ENSORLG00015002179	rnpc3	99	64.762	ENSELUG00000002264	rnpc3	99	64.571	Esox_lucius
ENSORLG00015002179	rnpc3	97	52.148	ENSFCAG00000024312	RNPC3	95	53.831	Felis_catus
ENSORLG00015002179	rnpc3	89	55.556	ENSFALG00000002580	RNPC3	99	56.938	Ficedula_albicollis
ENSORLG00015002179	rnpc3	97	53.521	ENSFDAG00000019948	RNPC3	95	53.320	Fukomys_damarensis
ENSORLG00015002179	rnpc3	100	73.000	ENSFHEG00000020647	rnpc3	100	73.000	Fundulus_heteroclitus
ENSORLG00015002179	rnpc3	100	67.262	ENSGMOG00000019213	rnpc3	99	67.857	Gadus_morhua
ENSORLG00015002179	rnpc3	97	55.215	ENSGALG00000005162	RNPC3	88	55.328	Gallus_gallus
ENSORLG00015002179	rnpc3	100	76.275	ENSGAFG00000017236	rnpc3	100	76.471	Gambusia_affinis
ENSORLG00015002179	rnpc3	100	74.851	ENSGACG00000002048	rnpc3	98	75.644	Gasterosteus_aculeatus
ENSORLG00015002179	rnpc3	97	56.237	ENSGAGG00000008438	RNPC3	94	56.237	Gopherus_agassizii
ENSORLG00015002179	rnpc3	97	48.148	ENSGGOG00000026201	-	94	48.148	Gorilla_gorilla
ENSORLG00015002179	rnpc3	82	75.000	ENSHBUG00000015966	rnpc3	85	76.309	Haplochromis_burtoni
ENSORLG00015002179	rnpc3	97	51.462	ENSHGLG00000001708	RNPC3	95	53.119	Heterocephalus_glaber_female
ENSORLG00015002179	rnpc3	97	51.462	ENSHGLG00100003005	RNPC3	95	53.119	Heterocephalus_glaber_male
ENSORLG00015002179	rnpc3	99	73.360	ENSHCOG00000017135	rnpc3	99	73.360	Hippocampus_comes
ENSORLG00015002179	rnpc3	99	64.271	ENSIPUG00000002916	rnpc3	99	63.872	Ictalurus_punctatus
ENSORLG00015002179	rnpc3	97	53.614	ENSSTOG00000025020	RNPC3	95	53.614	Ictidomys_tridecemlineatus
ENSORLG00015002179	rnpc3	96	53.469	ENSJJAG00000010203	Rnpc3	96	53.239	Jaculus_jaculus
ENSORLG00015002179	rnpc3	99	77.400	ENSKMAG00000017358	rnpc3	99	75.400	Kryptolebias_marmoratus
ENSORLG00015002179	rnpc3	100	75.490	ENSLBEG00000024901	rnpc3	98	75.490	Labrus_bergylta
ENSORLG00015002179	rnpc3	99	57.540	ENSLACG00000005720	RNPC3	90	58.182	Latimeria_chalumnae
ENSORLG00015002179	rnpc3	98	62.298	ENSLOCG00000007986	rnpc3	98	61.895	Lepisosteus_oculatus
ENSORLG00015002179	rnpc3	97	55.242	ENSLAFG00000032342	RNPC3	95	53.939	Loxodonta_africana
ENSORLG00015002179	rnpc3	97	54.032	ENSMFAG00000002004	RNPC3	95	54.032	Macaca_fascicularis
ENSORLG00015002179	rnpc3	97	42.363	ENSMFAG00000002917	-	54	49.372	Macaca_fascicularis
ENSORLG00015002179	rnpc3	97	53.831	ENSMMUG00000018039	RNPC3	95	53.831	Macaca_mulatta
ENSORLG00015002179	rnpc3	79	51.923	ENSMMUG00000002098	-	85	51.923	Macaca_mulatta
ENSORLG00015002179	rnpc3	97	50.806	ENSMNEG00000033950	RNPC3	95	50.806	Macaca_nemestrina
ENSORLG00015002179	rnpc3	97	54.032	ENSMLEG00000033628	RNPC3	95	54.032	Mandrillus_leucophaeus
ENSORLG00015002179	rnpc3	97	43.737	ENSMLEG00000034644	-	95	43.326	Mandrillus_leucophaeus
ENSORLG00015002179	rnpc3	100	68.689	ENSMAMG00000007496	rnpc3	100	68.689	Mastacembelus_armatus
ENSORLG00015002179	rnpc3	99	75.828	ENSMZEG00005020233	rnpc3	99	75.828	Maylandia_zebra
ENSORLG00015002179	rnpc3	89	55.286	ENSMGAG00000006381	RNPC3	99	55.286	Meleagris_gallopavo
ENSORLG00015002179	rnpc3	97	54.564	ENSMAUG00000001358	Rnpc3	95	53.252	Mesocricetus_auratus
ENSORLG00015002179	rnpc3	97	54.032	ENSMICG00000029591	RNPC3	95	54.032	Microcebus_murinus
ENSORLG00015002179	rnpc3	97	55.040	ENSMOCG00000013423	Rnpc3	95	53.737	Microtus_ochrogaster
ENSORLG00015002179	rnpc3	100	69.860	ENSMMOG00000005309	rnpc3	100	71.457	Mola_mola
ENSORLG00015002179	rnpc3	97	54.303	ENSMODG00000002946	RNPC3	95	54.303	Monodelphis_domestica
ENSORLG00015002179	rnpc3	98	71.514	ENSMALG00000015471	rnpc3	99	71.514	Monopterus_albus
ENSORLG00015002179	rnpc3	97	54.839	MGP_CAROLIEiJ_G0025555	Rnpc3	97	53.119	Mus_caroli
ENSORLG00015002179	rnpc3	97	54.839	ENSMUSG00000027981	Rnpc3	99	51.709	Mus_musculus
ENSORLG00015002179	rnpc3	97	54.326	MGP_PahariEiJ_G0027001	Rnpc3	97	53.024	Mus_pahari
ENSORLG00015002179	rnpc3	97	54.637	MGP_SPRETEiJ_G0026505	Rnpc3	97	52.918	Mus_spretus
ENSORLG00015002179	rnpc3	97	52.362	ENSMPUG00000007349	RNPC3	95	54.065	Mustela_putorius_furo
ENSORLG00015002179	rnpc3	97	51.772	ENSMLUG00000028743	RNPC3	95	54.675	Myotis_lucifugus
ENSORLG00015002179	rnpc3	97	52.140	ENSNGAG00000010939	Rnpc3	96	53.815	Nannospalax_galili
ENSORLG00015002179	rnpc3	99	77.264	ENSNBRG00000012196	rnpc3	96	77.264	Neolamprologus_brichardi
ENSORLG00015002179	rnpc3	97	52.047	ENSNLEG00000012013	RNPC3	95	53.678	Nomascus_leucogenys
ENSORLG00015002179	rnpc3	97	55.375	ENSODEG00000007612	RNPC3	95	53.252	Octodon_degus
ENSORLG00015002179	rnpc3	99	77.909	ENSONIG00000004770	rnpc3	100	79.508	Oreochromis_niloticus
ENSORLG00015002179	rnpc3	91	55.150	ENSOANG00000008220	RNPC3	99	54.506	Ornithorhynchus_anatinus
ENSORLG00015002179	rnpc3	97	53.908	ENSOCUG00000004016	RNPC3	95	53.213	Oryctolagus_cuniculus
ENSORLG00015002179	rnpc3	100	98.000	ENSORLG00000005694	rnpc3	100	98.000	Oryzias_latipes
ENSORLG00015002179	rnpc3	100	98.400	ENSORLG00020005513	rnpc3	100	98.400	Oryzias_latipes_hni
ENSORLG00015002179	rnpc3	100	92.600	ENSOMEG00000017737	rnpc3	100	92.600	Oryzias_melastigma
ENSORLG00015002179	rnpc3	97	54.728	ENSOGAG00000026182	RNPC3	95	54.728	Otolemur_garnettii
ENSORLG00015002179	rnpc3	97	54.257	ENSOARG00000018719	RNPC3	95	53.373	Ovis_aries
ENSORLG00015002179	rnpc3	97	49.080	ENSPPAG00000030278	-	97	48.676	Pan_paniscus
ENSORLG00015002179	rnpc3	97	53.465	ENSPPAG00000037459	RNPC3	95	53.465	Pan_paniscus
ENSORLG00015002179	rnpc3	97	52.148	ENSPPRG00000020246	RNPC3	95	53.831	Panthera_pardus
ENSORLG00015002179	rnpc3	97	53.831	ENSPTIG00000009887	RNPC3	97	53.831	Panthera_tigris_altaica
ENSORLG00015002179	rnpc3	97	52.148	ENSPTRG00000033902	RNPC3	95	53.831	Pan_troglodytes
ENSORLG00015002179	rnpc3	97	47.951	ENSPTRG00000044227	-	97	47.951	Pan_troglodytes
ENSORLG00015002179	rnpc3	97	44.511	ENSPANG00000029957	-	51	48.536	Papio_anubis
ENSORLG00015002179	rnpc3	97	52.446	ENSPANG00000012137	RNPC3	95	54.141	Papio_anubis
ENSORLG00015002179	rnpc3	99	64.286	ENSPKIG00000008828	rnpc3	98	64.554	Paramormyrops_kingsleyae
ENSORLG00015002179	rnpc3	64	54.601	ENSPSIG00000007396	RNPC3	99	55.215	Pelodiscus_sinensis
ENSORLG00015002179	rnpc3	99	64.625	ENSPMGG00000011742	rnpc3	99	63.241	Periophthalmus_magnuspinnatus
ENSORLG00015002179	rnpc3	89	53.289	ENSPEMG00000020112	Rnpc3	99	51.982	Peromyscus_maniculatus_bairdii
ENSORLG00015002179	rnpc3	97	43.126	ENSPMAG00000003778	rnpc3	97	47.767	Petromyzon_marinus
ENSORLG00015002179	rnpc3	97	54.713	ENSPCIG00000004415	-	95	54.713	Phascolarctos_cinereus
ENSORLG00015002179	rnpc3	100	78.193	ENSPFOG00000009895	rnpc3	100	78.193	Poecilia_formosa
ENSORLG00015002179	rnpc3	99	78.020	ENSPLAG00000012023	rnpc3	99	78.020	Poecilia_latipinna
ENSORLG00015002179	rnpc3	100	78.431	ENSPMEG00000003663	rnpc3	100	78.389	Poecilia_mexicana
ENSORLG00015002179	rnpc3	100	77.953	ENSPREG00000010206	rnpc3	100	78.346	Poecilia_reticulata
ENSORLG00015002179	rnpc3	81	47.564	ENSPPYG00000001102	RNPC3	94	49.398	Pongo_abelii
ENSORLG00015002179	rnpc3	99	76.660	ENSPNYG00000020603	rnpc3	99	76.660	Pundamilia_nyererei
ENSORLG00015002179	rnpc3	97	53.333	ENSRNOG00000017310	Rnpc3	95	53.106	Rattus_norvegicus
ENSORLG00015002179	rnpc3	97	49.505	ENSRBIG00000043897	RNPC3	95	49.505	Rhinopithecus_bieti
ENSORLG00015002179	rnpc3	97	54.032	ENSRROG00000032334	RNPC3	95	54.032	Rhinopithecus_roxellana
ENSORLG00015002179	rnpc3	97	53.737	ENSSBOG00000024473	RNPC3	95	53.737	Saimiri_boliviensis_boliviensis
ENSORLG00015002179	rnpc3	97	54.065	ENSSHAG00000011859	RNPC3	95	54.065	Sarcophilus_harrisii
ENSORLG00015002179	rnpc3	98	67.617	ENSSFOG00015013055	rnpc3	99	67.617	Scleropages_formosus
ENSORLG00015002179	rnpc3	100	72.621	ENSSMAG00000020346	rnpc3	100	74.369	Scophthalmus_maximus
ENSORLG00015002179	rnpc3	100	76.803	ENSSDUG00000006600	rnpc3	100	76.803	Seriola_dumerili
ENSORLG00015002179	rnpc3	100	76.998	ENSSLDG00000007979	rnpc3	100	76.998	Seriola_lalandi_dorsalis
ENSORLG00015002179	rnpc3	97	56.073	ENSSPUG00000008539	-	95	56.073	Sphenodon_punctatus
ENSORLG00015002179	rnpc3	97	52.577	ENSSPUG00000003872	-	92	52.577	Sphenodon_punctatus
ENSORLG00015002179	rnpc3	100	77.092	ENSSPAG00000005633	rnpc3	100	75.100	Stegastes_partitus
ENSORLG00015002179	rnpc3	97	52.838	ENSSSCG00000037254	RNPC3	95	54.217	Sus_scrofa
ENSORLG00015002179	rnpc3	89	56.152	ENSTGUG00000004795	-	99	56.152	Taeniopygia_guttata
ENSORLG00015002179	rnpc3	99	73.373	ENSTNIG00000018963	rnpc3	99	73.373	Tetraodon_nigroviridis
ENSORLG00015002179	rnpc3	97	52.344	ENSUMAG00000007775	RNPC3	97	54.032	Ursus_maritimus
ENSORLG00015002179	rnpc3	97	52.148	ENSVVUG00000000331	RNPC3	95	53.831	Vulpes_vulpes
ENSORLG00015002179	rnpc3	99	45.455	ENSXETG00000025027	rnpc3	97	44.727	Xenopus_tropicalis
ENSORLG00015002179	rnpc3	100	73.777	ENSXCOG00000005013	rnpc3	100	77.104	Xiphophorus_couchianus
ENSORLG00015002179	rnpc3	100	76.863	ENSXMAG00000006495	rnpc3	100	77.059	Xiphophorus_maculatus