EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015003757 (Gene tree)
Gene ID: -
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 3054 bases
Position: chr23:23169312-23172365
Accession: 101159787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015003060	LSM	PF01423.22	1.2e-18	1	1
ENSORLP00015003048	LSM	PF01423.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015009924	-	1167	-	ENSORLP00015003060	96 (aa)	XP_004083300	UPI0000365500
ENSORLT00015009937	-	291	-	ENSORLP00015003048	96 (aa)	-	-

Gene Model

Click here to download ENSORLG00015003757's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015003757's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015003757	lsm8	100	92.708	ENSG00000128534	LSM8	100	97.333	Homo_sapiens
ENSORLG00015003757	lsm8	100	100.000	ENSAPOG00000008649	lsm8	100	100.000	Acanthochromis_polyacanthus
ENSORLG00015003757	lsm8	100	92.708	ENSAMEG00000001162	LSM8	100	92.708	Ailuropoda_melanoleuca
ENSORLG00015003757	lsm8	78	100.000	ENSACIG00000014694	lsm8	100	100.000	Amphilophus_citrinellus
ENSORLG00015003757	lsm8	100	100.000	ENSAOCG00000013926	lsm8	100	100.000	Amphiprion_ocellaris
ENSORLG00015003757	lsm8	100	100.000	ENSAPEG00000023502	lsm8	100	100.000	Amphiprion_percula
ENSORLG00015003757	lsm8	78	100.000	ENSATEG00000023432	lsm8	100	100.000	Anabas_testudineus
ENSORLG00015003757	lsm8	95	89.362	ENSAPLG00000005115	LSM8	95	89.362	Anas_platyrhynchos
ENSORLG00015003757	lsm8	100	92.708	ENSANAG00000027771	LSM8	100	94.595	Aotus_nancymaae
ENSORLG00015003757	lsm8	100	100.000	ENSACLG00000011253	lsm8	100	100.000	Astatotilapia_calliptera
ENSORLG00015003757	lsm8	100	97.917	ENSAMXG00000042902	lsm8	100	97.917	Astyanax_mexicanus
ENSORLG00015003757	lsm8	100	92.708	ENSBTAG00000012649	LSM8	100	92.708	Bos_taurus
ENSORLG00015003757	lsm8	98	56.383	WBGene00003082	lsm-8	96	56.383	Caenorhabditis_elegans
ENSORLG00015003757	lsm8	100	92.708	ENSCJAG00000046406	LSM8	100	94.595	Callithrix_jacchus
ENSORLG00015003757	lsm8	98	93.617	ENSCAFG00000016459	LSM8	95	93.617	Canis_familiaris
ENSORLG00015003757	lsm8	100	92.708	ENSCAFG00020007643	-	100	92.708	Canis_lupus_dingo
ENSORLG00015003757	lsm8	89	91.765	ENSCAFG00020012800	-	66	91.765	Canis_lupus_dingo
ENSORLG00015003757	lsm8	89	95.294	ENSCHIG00000014201	LSM8	90	95.294	Capra_hircus
ENSORLG00015003757	lsm8	100	92.708	ENSTSYG00000032434	LSM8	100	92.708	Carlito_syrichta
ENSORLG00015003757	lsm8	77	95.946	ENSCAPG00000008253	LSM8	100	95.946	Cavia_aperea
ENSORLG00015003757	lsm8	100	92.708	ENSCPOG00000035673	LSM8	100	92.708	Cavia_porcellus
ENSORLG00015003757	lsm8	100	92.708	ENSCCAG00000021329	LSM8	100	94.595	Cebus_capucinus
ENSORLG00015003757	lsm8	100	92.708	ENSCATG00000045302	LSM8	100	94.595	Cercocebus_atys
ENSORLG00015003757	lsm8	100	92.708	ENSCLAG00000003726	LSM8	100	92.708	Chinchilla_lanigera
ENSORLG00015003757	lsm8	100	92.708	ENSCSAG00000010802	-	100	92.708	Chlorocebus_sabaeus
ENSORLG00015003757	lsm8	100	89.583	ENSCSAG00000019007	-	100	89.583	Chlorocebus_sabaeus
ENSORLG00015003757	lsm8	89	95.294	ENSCPBG00000008154	LSM8	87	95.294	Chrysemys_picta_bellii
ENSORLG00015003757	lsm8	100	75.000	ENSCING00000024877	-	100	75.000	Ciona_intestinalis
ENSORLG00015003757	lsm8	100	92.708	ENSCANG00000040728	LSM8	100	94.595	Colobus_angolensis_palliatus
ENSORLG00015003757	lsm8	100	92.708	ENSCGRG00001000450	Lsm8	100	92.708	Cricetulus_griseus_chok1gshd
ENSORLG00015003757	lsm8	89	95.294	ENSCGRG00000005587	Lsm8	100	95.294	Cricetulus_griseus_crigri
ENSORLG00015003757	lsm8	100	88.542	ENSCSEG00000004164	lsm8	100	88.542	Cynoglossus_semilaevis
ENSORLG00015003757	lsm8	100	98.958	ENSCVAG00000020547	lsm8	100	98.958	Cyprinodon_variegatus
ENSORLG00015003757	lsm8	100	96.875	ENSDARG00000091656	lsm8	100	96.875	Danio_rerio
ENSORLG00015003757	lsm8	100	92.708	ENSDNOG00000034613	LSM8	100	92.708	Dasypus_novemcinctus
ENSORLG00015003757	lsm8	100	92.708	ENSDORG00000027868	Lsm8	100	92.708	Dipodomys_ordii
ENSORLG00015003757	lsm8	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSORLG00015003757	lsm8	100	93.750	ENSETEG00000011594	LSM8	100	93.750	Echinops_telfairi
ENSORLG00015003757	lsm8	75	95.833	ENSEBUG00000012017	lsm8	100	93.243	Eptatretus_burgeri
ENSORLG00015003757	lsm8	100	92.708	ENSEASG00005008932	LSM8	62	92.708	Equus_asinus_asinus
ENSORLG00015003757	lsm8	89	95.294	ENSECAG00000024025	LSM8	77	95.294	Equus_caballus
ENSORLG00015003757	lsm8	100	95.833	ENSELUG00000010138	lsm8	100	95.833	Esox_lucius
ENSORLG00015003757	lsm8	100	92.708	ENSFCAG00000036620	-	100	92.708	Felis_catus
ENSORLG00015003757	lsm8	84	72.840	ENSFCAG00000044794	-	82	72.840	Felis_catus
ENSORLG00015003757	lsm8	100	93.750	ENSFALG00000010023	LSM8	100	93.750	Ficedula_albicollis
ENSORLG00015003757	lsm8	100	92.708	ENSFDAG00000019530	LSM8	100	92.708	Fukomys_damarensis
ENSORLG00015003757	lsm8	100	100.000	ENSFHEG00000013729	lsm8	100	100.000	Fundulus_heteroclitus
ENSORLG00015003757	lsm8	100	93.750	ENSGALG00000009110	LSM8	100	93.750	Gallus_gallus
ENSORLG00015003757	lsm8	100	98.958	ENSGAFG00000001135	lsm8	100	98.958	Gambusia_affinis
ENSORLG00015003757	lsm8	100	92.708	ENSGAGG00000017366	LSM8	100	92.708	Gopherus_agassizii
ENSORLG00015003757	lsm8	100	92.708	ENSGGOG00000041883	LSM8	100	92.708	Gorilla_gorilla
ENSORLG00015003757	lsm8	100	100.000	ENSHBUG00000003646	lsm8	100	100.000	Haplochromis_burtoni
ENSORLG00015003757	lsm8	100	86.458	ENSHGLG00000019782	-	100	86.458	Heterocephalus_glaber_female
ENSORLG00015003757	lsm8	71	92.647	ENSHGLG00000001988	-	99	92.647	Heterocephalus_glaber_female
ENSORLG00015003757	lsm8	100	88.542	ENSHGLG00100012166	-	100	88.542	Heterocephalus_glaber_male
ENSORLG00015003757	lsm8	98	91.489	ENSHGLG00100003934	-	94	91.489	Heterocephalus_glaber_male
ENSORLG00015003757	lsm8	100	98.958	ENSHCOG00000005037	lsm8	100	98.958	Hippocampus_comes
ENSORLG00015003757	lsm8	100	97.917	ENSIPUG00000019811	NAA38	100	97.917	Ictalurus_punctatus
ENSORLG00015003757	lsm8	92	82.955	ENSSTOG00000034801	-	81	82.955	Ictidomys_tridecemlineatus
ENSORLG00015003757	lsm8	100	92.708	ENSSTOG00000009039	LSM8	100	92.708	Ictidomys_tridecemlineatus
ENSORLG00015003757	lsm8	100	92.708	ENSJJAG00000009031	Lsm8	99	92.708	Jaculus_jaculus
ENSORLG00015003757	lsm8	100	100.000	ENSKMAG00000018983	lsm8	100	100.000	Kryptolebias_marmoratus
ENSORLG00015003757	lsm8	100	93.750	ENSLACG00000010231	LSM8	100	93.750	Latimeria_chalumnae
ENSORLG00015003757	lsm8	100	96.875	ENSLOCG00000015580	lsm8	100	96.875	Lepisosteus_oculatus
ENSORLG00015003757	lsm8	100	91.753	ENSLAFG00000011242	LSM8	100	91.753	Loxodonta_africana
ENSORLG00015003757	lsm8	100	89.583	ENSMFAG00000013044	-	100	89.583	Macaca_fascicularis
ENSORLG00015003757	lsm8	100	92.708	ENSMFAG00000035798	LSM8	100	94.595	Macaca_fascicularis
ENSORLG00015003757	lsm8	100	92.708	ENSMMUG00000046401	LSM8	100	94.595	Macaca_mulatta
ENSORLG00015003757	lsm8	100	92.708	ENSMNEG00000036764	-	100	94.595	Macaca_nemestrina
ENSORLG00015003757	lsm8	78	94.667	ENSMNEG00000011141	-	100	94.667	Macaca_nemestrina
ENSORLG00015003757	lsm8	100	78.125	ENSMLEG00000039324	-	100	78.125	Mandrillus_leucophaeus
ENSORLG00015003757	lsm8	100	92.708	ENSMLEG00000035828	-	100	94.595	Mandrillus_leucophaeus
ENSORLG00015003757	lsm8	78	100.000	ENSMAMG00000018839	lsm8	100	100.000	Mastacembelus_armatus
ENSORLG00015003757	lsm8	100	100.000	ENSMZEG00005019138	lsm8	100	100.000	Maylandia_zebra
ENSORLG00015003757	lsm8	100	93.750	ENSMGAG00000008808	LSM8	100	93.750	Meleagris_gallopavo
ENSORLG00015003757	lsm8	100	73.958	ENSMAUG00000015356	-	100	73.958	Mesocricetus_auratus
ENSORLG00015003757	lsm8	75	90.278	ENSMAUG00000020287	-	100	87.838	Mesocricetus_auratus
ENSORLG00015003757	lsm8	100	86.458	ENSMAUG00000015721	-	100	86.458	Mesocricetus_auratus
ENSORLG00015003757	lsm8	100	92.708	ENSMICG00000042730	LSM8	100	92.708	Microcebus_murinus
ENSORLG00015003757	lsm8	100	92.708	ENSMOCG00000001688	Lsm8	100	92.708	Microtus_ochrogaster
ENSORLG00015003757	lsm8	78	100.000	ENSMMOG00000006046	lsm8	100	100.000	Mola_mola
ENSORLG00015003757	lsm8	76	85.333	ENSMODG00000015729	LSM8	96	85.333	Monodelphis_domestica
ENSORLG00015003757	lsm8	100	98.958	ENSMALG00000000405	lsm8	100	98.958	Monopterus_albus
ENSORLG00015003757	lsm8	100	92.708	MGP_CAROLIEiJ_G0028125	-	100	92.708	Mus_caroli
ENSORLG00015003757	lsm8	100	92.708	ENSMUSG00000044155	Lsm8	100	92.708	Mus_musculus
ENSORLG00015003757	lsm8	100	92.708	MGP_PahariEiJ_G0021881	Lsm8	100	97.333	Mus_pahari
ENSORLG00015003757	lsm8	100	92.708	MGP_SPRETEiJ_G0029125	-	100	92.708	Mus_spretus
ENSORLG00015003757	lsm8	100	92.708	ENSMLUG00000006837	-	100	92.708	Myotis_lucifugus
ENSORLG00015003757	lsm8	100	91.667	ENSMLUG00000027762	-	100	91.667	Myotis_lucifugus
ENSORLG00015003757	lsm8	100	92.708	ENSNGAG00000016554	Lsm8	100	92.708	Nannospalax_galili
ENSORLG00015003757	lsm8	100	100.000	ENSNBRG00000014441	lsm8	100	100.000	Neolamprologus_brichardi
ENSORLG00015003757	lsm8	100	92.708	ENSNLEG00000011768	LSM8	100	92.708	Nomascus_leucogenys
ENSORLG00015003757	lsm8	100	81.250	ENSMEUG00000007801	LSM8	100	81.250	Notamacropus_eugenii
ENSORLG00015003757	lsm8	89	95.294	ENSOPRG00000014809	LSM8	100	95.294	Ochotona_princeps
ENSORLG00015003757	lsm8	90	75.581	ENSODEG00000020290	-	100	75.581	Octodon_degus
ENSORLG00015003757	lsm8	100	92.708	ENSODEG00000000418	-	100	92.708	Octodon_degus
ENSORLG00015003757	lsm8	100	91.667	ENSOANG00000014536	LSM8	100	91.667	Ornithorhynchus_anatinus
ENSORLG00015003757	lsm8	100	91.753	ENSOCUG00000017359	LSM8	100	91.753	Oryctolagus_cuniculus
ENSORLG00015003757	lsm8	100	88.542	ENSORLG00000017432	lsm8	100	88.542	Oryzias_latipes
ENSORLG00015003757	lsm8	100	88.542	ENSORLG00020004376	lsm8	100	88.542	Oryzias_latipes_hni
ENSORLG00015003757	lsm8	100	92.708	ENSOMEG00000022509	lsm8	100	92.708	Oryzias_melastigma
ENSORLG00015003757	lsm8	100	92.708	ENSOGAG00000013377	LSM8	100	92.708	Otolemur_garnettii
ENSORLG00015003757	lsm8	100	92.708	ENSOARG00000017974	LSM8	100	92.708	Ovis_aries
ENSORLG00015003757	lsm8	78	97.333	ENSPPAG00000043228	-	100	97.333	Pan_paniscus
ENSORLG00015003757	lsm8	100	92.708	ENSPPRG00000006444	LSM8	100	92.708	Panthera_pardus
ENSORLG00015003757	lsm8	100	92.708	ENSPTIG00000004722	LSM8	100	92.708	Panthera_tigris_altaica
ENSORLG00015003757	lsm8	78	97.333	ENSPTRG00000046596	-	100	97.333	Pan_troglodytes
ENSORLG00015003757	lsm8	100	87.500	ENSPANG00000019395	-	100	87.500	Papio_anubis
ENSORLG00015003757	lsm8	100	92.708	ENSPANG00000035470	-	100	94.595	Papio_anubis
ENSORLG00015003757	lsm8	89	95.294	ENSPKIG00000006092	lsm8	86	95.294	Paramormyrops_kingsleyae
ENSORLG00015003757	lsm8	78	97.333	ENSPSIG00000017054	LSM8	100	97.333	Pelodiscus_sinensis
ENSORLG00015003757	lsm8	78	100.000	ENSPMGG00000016442	lsm8	100	100.000	Periophthalmus_magnuspinnatus
ENSORLG00015003757	lsm8	75	97.222	ENSPEMG00000009153	Lsm8	100	94.595	Peromyscus_maniculatus_bairdii
ENSORLG00015003757	lsm8	97	93.548	ENSPCIG00000021467	LSM8	98	93.548	Phascolarctos_cinereus
ENSORLG00015003757	lsm8	100	98.958	ENSPFOG00000012340	lsm8	100	98.958	Poecilia_formosa
ENSORLG00015003757	lsm8	100	89.583	ENSPLAG00000000516	lsm8	100	89.583	Poecilia_latipinna
ENSORLG00015003757	lsm8	100	98.958	ENSPMEG00000022567	lsm8	100	98.958	Poecilia_mexicana
ENSORLG00015003757	lsm8	100	72.381	ENSPREG00000005527	lsm8	95	72.381	Poecilia_reticulata
ENSORLG00015003757	lsm8	100	92.708	ENSPPYG00000017942	LSM8	100	92.708	Pongo_abelii
ENSORLG00015003757	lsm8	97	73.118	ENSPCOG00000017982	-	97	73.118	Propithecus_coquereli
ENSORLG00015003757	lsm8	100	92.708	ENSPCOG00000003309	-	100	92.708	Propithecus_coquereli
ENSORLG00015003757	lsm8	89	94.118	ENSPVAG00000000990	LSM8	100	94.118	Pteropus_vampyrus
ENSORLG00015003757	lsm8	100	100.000	ENSPNYG00000011448	lsm8	100	100.000	Pundamilia_nyererei
ENSORLG00015003757	lsm8	100	97.917	ENSPNAG00000010252	lsm8	100	97.917	Pygocentrus_nattereri
ENSORLG00015003757	lsm8	100	92.708	ENSRNOG00000058677	Lsm8	100	92.708	Rattus_norvegicus
ENSORLG00015003757	lsm8	100	92.708	ENSRBIG00000032851	LSM8	100	94.595	Rhinopithecus_bieti
ENSORLG00015003757	lsm8	100	92.708	ENSRROG00000039618	LSM8	100	94.595	Rhinopithecus_roxellana
ENSORLG00015003757	lsm8	100	92.708	ENSSBOG00000023223	LSM8	100	94.595	Saimiri_boliviensis_boliviensis
ENSORLG00015003757	lsm8	100	92.708	ENSSHAG00000018435	-	100	92.708	Sarcophilus_harrisii
ENSORLG00015003757	lsm8	100	96.875	ENSSFOG00015004412	lsm8	100	96.875	Scleropages_formosus
ENSORLG00015003757	lsm8	78	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSORLG00015003757	lsm8	100	100.000	ENSSDUG00000014702	lsm8	100	100.000	Seriola_dumerili
ENSORLG00015003757	lsm8	78	100.000	ENSSLDG00000016870	lsm8	100	100.000	Seriola_lalandi_dorsalis
ENSORLG00015003757	lsm8	75	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSORLG00015003757	lsm8	100	92.708	ENSSPUG00000017419	LSM8	100	92.708	Sphenodon_punctatus
ENSORLG00015003757	lsm8	100	100.000	ENSSPAG00000021422	lsm8	100	100.000	Stegastes_partitus
ENSORLG00015003757	lsm8	100	92.708	ENSSSCG00000021652	LSM8	100	92.708	Sus_scrofa
ENSORLG00015003757	lsm8	100	93.750	ENSTGUG00000004730	-	100	93.750	Taeniopygia_guttata
ENSORLG00015003757	lsm8	100	92.708	ENSTGUG00000016823	-	100	92.708	Taeniopygia_guttata
ENSORLG00015003757	lsm8	100	100.000	ENSTRUG00000025192	lsm8	100	100.000	Takifugu_rubripes
ENSORLG00015003757	lsm8	100	100.000	ENSTNIG00000002864	lsm8	100	100.000	Tetraodon_nigroviridis
ENSORLG00015003757	lsm8	100	92.708	ENSTTRG00000001023	LSM8	100	92.708	Tursiops_truncatus
ENSORLG00015003757	lsm8	92	92.045	ENSUAMG00000006943	-	92	92.045	Ursus_americanus
ENSORLG00015003757	lsm8	92	92.045	ENSUMAG00000003073	LSM8	94	92.045	Ursus_maritimus
ENSORLG00015003757	lsm8	100	92.708	ENSVPAG00000001530	LSM8	100	92.708	Vicugna_pacos
ENSORLG00015003757	lsm8	78	94.667	ENSVVUG00000013248	-	82	94.667	Vulpes_vulpes
ENSORLG00015003757	lsm8	93	94.382	ENSXETG00000021829	lsm8	92	94.382	Xenopus_tropicalis
ENSORLG00015003757	lsm8	100	96.875	ENSXCOG00000012938	lsm8	100	96.875	Xiphophorus_couchianus
ENSORLG00015003757	lsm8	100	98.958	ENSXMAG00000025919	lsm8	100	98.958	Xiphophorus_maculatus