EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015004273 (Gene tree)
Gene ID: -
Gene Symbol: rab42a
Alias: -
Full Name: ras-related protein Rab-39B
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 6815 bases
Position: chr11:11538580-11545394
Accession: 101162224
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015003521	MMR_HSR1	PF01926.23	7.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015009131	-	5080	-	ENSORLP00015003521	218 (aa)	XP_004074343	UPI0002A4828C

Gene Model

Click here to download ENSORLG00015004273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015004273's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015004273	rab42a	82	42.697	ENSORLG00015000618	-	87	42.697
ENSORLG00015004273	rab42a	72	42.236	ENSORLG00015015121	si:dkey-13a21.4	77	42.236
ENSORLG00015004273	rab42a	70	40.909	ENSORLG00015016047	zgc:101559	66	40.909
ENSORLG00015004273	rab42a	69	35.099	ENSORLG00015003353	zgc:55558	87	34.146
ENSORLG00015004273	rab42a	72	38.217	ENSORLG00015006970	rab6ba	75	38.217
ENSORLG00015004273	rab42a	79	34.483	ENSORLG00015000584	rab34b	63	34.483
ENSORLG00015004273	rab42a	69	35.526	ENSORLG00015008252	si:ch73-116o1.2	79	34.940
ENSORLG00015004273	rab42a	75	43.902	ENSORLG00015010042	rab35b	80	43.902
ENSORLG00015004273	rab42a	79	40.462	ENSORLG00015007182	rab18b	83	40.462
ENSORLG00015004273	rab42a	76	30.588	ENSORLG00015019530	rasd4	79	30.588
ENSORLG00015004273	rab42a	80	41.714	ENSORLG00015014594	rab3db	92	37.788
ENSORLG00015004273	rab42a	74	33.742	ENSORLG00015011467	kras	98	30.890
ENSORLG00015004273	rab42a	67	45.946	ENSORLG00015012872	rab33ba	62	45.946
ENSORLG00015004273	rab42a	85	41.935	ENSORLG00015020173	rab11bb	84	41.935
ENSORLG00015004273	rab42a	98	38.785	ENSORLG00015006881	rab14	97	38.785
ENSORLG00015004273	rab42a	79	44.186	ENSORLG00015010098	zgc:171927	80	44.186
ENSORLG00015004273	rab42a	74	31.902	ENSORLG00015014268	rabl2	69	32.298
ENSORLG00015004273	rab42a	74	34.940	ENSORLG00015002344	-	79	34.940
ENSORLG00015004273	rab42a	98	57.277	ENSORLG00015000142	si:dkey-34d22.5	97	57.277
ENSORLG00015004273	rab42a	97	39.623	ENSORLG00015012725	rab25a	67	39.623
ENSORLG00015004273	rab42a	84	42.623	ENSORLG00015019591	rab11al	84	42.623
ENSORLG00015004273	rab42a	77	36.905	ENSORLG00015004377	RAB15	80	36.905
ENSORLG00015004273	rab42a	84	32.000	ENSORLG00015020495	rasl11a	76	32.000
ENSORLG00015004273	rab42a	74	34.940	ENSORLG00015006820	-	80	34.940
ENSORLG00015004273	rab42a	72	39.490	ENSORLG00015006162	rab6a	75	39.490
ENSORLG00015004273	rab42a	74	34.161	ENSORLG00015004033	rab23	73	35.526
ENSORLG00015004273	rab42a	100	55.046	ENSORLG00015003202	RAB39B	100	55.046
ENSORLG00015004273	rab42a	75	37.126	ENSORLG00015004265	rab9b	79	37.126
ENSORLG00015004273	rab42a	78	34.104	ENSORLG00015020441	-	84	34.104
ENSORLG00015004273	rab42a	75	37.195	ENSORLG00015021900	rab5c	74	37.195
ENSORLG00015004273	rab42a	89	40.206	ENSORLG00015020972	rab30	95	40.206
ENSORLG00015004273	rab42a	85	41.935	ENSORLG00015016999	RAB11B	84	41.935
ENSORLG00015004273	rab42a	67	44.079	ENSORLG00015013453	-	62	44.079
ENSORLG00015004273	rab42a	100	54.128	ENSORLG00015022289	-	100	54.128
ENSORLG00015004273	rab42a	76	39.394	ENSORLG00015004739	rab18a	80	39.394
ENSORLG00015004273	rab42a	86	47.872	ENSORLG00015020900	rab2a	88	47.872
ENSORLG00015004273	rab42a	82	41.341	ENSORLG00015019569	rab25b	86	42.353
ENSORLG00015004273	rab42a	96	37.850	ENSORLG00015013638	rab15	96	37.850
ENSORLG00015004273	rab42a	77	33.333	ENSORLG00015002191	rheb	89	33.333
ENSORLG00015004273	rab42a	75	31.325	ENSORLG00015002284	rerg	82	31.325
ENSORLG00015004273	rab42a	72	39.490	ENSORLG00015010161	RAB41	73	39.490
ENSORLG00015004273	rab42a	82	42.697	ENSORLG00015010986	rab1ab	87	42.697
ENSORLG00015004273	rab42a	98	38.318	ENSORLG00015000893	-	97	38.318
ENSORLG00015004273	rab42a	80	31.818	ENSORLG00015006780	-	93	31.818
ENSORLG00015004273	rab42a	72	32.484	ENSORLG00015010289	rras	86	31.765
ENSORLG00015004273	rab42a	75	34.756	ENSORLG00015017737	rab5ab	75	34.756
ENSORLG00015004273	rab42a	74	42.331	ENSORLG00015013564	-	81	42.331
ENSORLG00015004273	rab42a	85	39.785	ENSORLG00015007869	rab12	76	39.785
ENSORLG00015004273	rab42a	91	40.201	ENSORLG00015010257	rab11a	92	40.201
ENSORLG00015004273	rab42a	84	42.623	ENSORLG00015016946	rab11ba	68	42.623
ENSORLG00015004273	rab42a	79	42.775	ENSORLG00015015518	-	86	42.775
ENSORLG00015004273	rab42a	72	38.854	ENSORLG00015013537	rab6bb	75	38.854
ENSORLG00015004273	rab42a	77	32.934	ENSORLG00015001298	rhebl1	88	32.934
ENSORLG00015004273	rab42a	75	35.366	ENSORLG00015012854	rab5aa	75	35.366
ENSORLG00015004273	rab42a	90	32.673	ENSORLG00015014829	rab34a	76	32.673
ENSORLG00015004273	rab42a	67	41.216	ENSORLG00015015327	rab33a	53	41.216

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015004273	rab42a	100	95.872	ENSAPOG00000009188	rab42a	100	95.872	Acanthochromis_polyacanthus
ENSORLG00015004273	rab42a	100	96.330	ENSACIG00000003102	rab42a	100	96.330	Amphilophus_citrinellus
ENSORLG00015004273	rab42a	100	95.413	ENSAOCG00000012921	rab42a	83	95.413	Amphiprion_ocellaris
ENSORLG00015004273	rab42a	100	95.413	ENSAPEG00000007713	rab42a	83	95.413	Amphiprion_percula
ENSORLG00015004273	rab42a	100	93.119	ENSATEG00000009052	rab42a	100	93.119	Anabas_testudineus
ENSORLG00015004273	rab42a	100	95.413	ENSACLG00000007514	rab42a	100	95.413	Astatotilapia_calliptera
ENSORLG00015004273	rab42a	100	90.826	ENSAMXG00000032729	rab42a	100	90.826	Astyanax_mexicanus
ENSORLG00015004273	rab42a	100	93.119	ENSCSEG00000010582	rab42a	100	93.119	Cynoglossus_semilaevis
ENSORLG00015004273	rab42a	100	47.032	ENSDARG00000102580	CU571310.1	99	47.032	Danio_rerio
ENSORLG00015004273	rab42a	100	91.284	ENSDARG00000034215	rab42a	100	91.284	Danio_rerio
ENSORLG00015004273	rab42a	100	89.450	ENSELUG00000010345	rab42a	100	89.450	Esox_lucius
ENSORLG00015004273	rab42a	100	96.330	ENSFHEG00000013106	rab42a	100	96.330	Fundulus_heteroclitus
ENSORLG00015004273	rab42a	100	95.413	ENSGAFG00000002141	rab42a	100	95.413	Gambusia_affinis
ENSORLG00015004273	rab42a	100	95.413	ENSHBUG00000015126	rab42a	82	95.413	Haplochromis_burtoni
ENSORLG00015004273	rab42a	100	88.073	ENSIPUG00000011376	rab42a	100	88.073	Ictalurus_punctatus
ENSORLG00015004273	rab42a	100	95.413	ENSKMAG00000007267	rab42a	100	95.413	Kryptolebias_marmoratus
ENSORLG00015004273	rab42a	100	95.872	ENSLBEG00000001193	rab42a	100	95.872	Labrus_bergylta
ENSORLG00015004273	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSORLG00015004273	rab42a	100	50.685	ENSLOCG00000015825	-	99	50.685	Lepisosteus_oculatus
ENSORLG00015004273	rab42a	100	82.110	ENSLOCG00000003453	rab42a	100	82.110	Lepisosteus_oculatus
ENSORLG00015004273	rab42a	100	97.248	ENSMAMG00000002296	rab42a	100	97.248	Mastacembelus_armatus
ENSORLG00015004273	rab42a	100	95.413	ENSMZEG00005012460	rab42a	82	95.413	Maylandia_zebra
ENSORLG00015004273	rab42a	100	93.578	ENSMMOG00000014358	rab42a	100	93.578	Mola_mola
ENSORLG00015004273	rab42a	100	95.872	ENSNBRG00000021487	rab42a	82	95.872	Neolamprologus_brichardi
ENSORLG00015004273	rab42a	100	100.000	ENSORLG00000022335	rab42a	100	100.000	Oryzias_latipes
ENSORLG00015004273	rab42a	100	100.000	ENSORLG00020013895	rab42a	100	100.000	Oryzias_latipes_hni
ENSORLG00015004273	rab42a	100	100.000	ENSOMEG00000020418	rab42a	100	100.000	Oryzias_melastigma
ENSORLG00015004273	rab42a	100	78.082	ENSPKIG00000021215	-	100	78.082	Paramormyrops_kingsleyae
ENSORLG00015004273	rab42a	89	50.000	ENSPKIG00000015234	-	93	50.000	Paramormyrops_kingsleyae
ENSORLG00015004273	rab42a	90	95.939	ENSPMGG00000024112	rab42a	90	95.939	Periophthalmus_magnuspinnatus
ENSORLG00015004273	rab42a	100	94.495	ENSPFOG00000004838	rab42a	82	94.495	Poecilia_formosa
ENSORLG00015004273	rab42a	100	94.954	ENSPLAG00000005628	rab42a	100	94.954	Poecilia_latipinna
ENSORLG00015004273	rab42a	100	94.495	ENSPMEG00000019497	rab42a	100	94.495	Poecilia_mexicana
ENSORLG00015004273	rab42a	100	95.413	ENSPREG00000013962	rab42a	100	95.413	Poecilia_reticulata
ENSORLG00015004273	rab42a	100	95.413	ENSPNYG00000010325	rab42a	82	95.413	Pundamilia_nyererei
ENSORLG00015004273	rab42a	100	90.826	ENSPNAG00000016567	rab42a	100	90.826	Pygocentrus_nattereri
ENSORLG00015004273	rab42a	100	84.862	ENSSFOG00015020732	rab42a	100	84.862	Scleropages_formosus
ENSORLG00015004273	rab42a	100	46.119	ENSSFOG00015016000	-	97	46.119	Scleropages_formosus
ENSORLG00015004273	rab42a	100	94.495	ENSSMAG00000020311	rab42a	100	94.495	Scophthalmus_maximus
ENSORLG00015004273	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSORLG00015004273	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSORLG00015004273	rab42a	100	97.248	ENSSPAG00000016167	rab42a	100	97.248	Stegastes_partitus
ENSORLG00015004273	rab42a	100	95.413	ENSTRUG00000010224	rab42a	100	95.413	Takifugu_rubripes
ENSORLG00015004273	rab42a	100	95.872	ENSXCOG00000003428	rab42a	100	95.872	Xiphophorus_couchianus
ENSORLG00015004273	rab42a	100	95.872	ENSXMAG00000028376	rab42a	100	95.872	Xiphophorus_maculatus