EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015007621 (Gene tree)
Gene ID: -
Gene Symbol: prdm12b
Alias: -
Full Name: PR domain containing 12b
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 3870 bases
Position: chr12:12119308-12123177
Accession: ZDB-GENE-041114-172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015006782	zf-C2H2	PF00096.26	7.4e-13	1	2
ENSORLP00015006782	zf-C2H2	PF00096.26	7.4e-13	2	2
ENSORLP00015006782	zf-met	PF12874.7	8.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015003647	-	1903	-	ENSORLP00015006782	379 (aa)	-	-

Gene Model

Click here to download ENSORLG00015007621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015007621's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015007621	prdm12b	71	40.449	ENSORLG00015013760	prdm5	94	42.105
ENSORLG00015007621	prdm12b	99	76.904	ENSORLG00015003435	-	100	76.904
ENSORLG00015007621	prdm12b	53	36.364	ENSORLG00015003796	-	54	44.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015007621	prdm12b	92	80.692	ENSG00000130711	PRDM12	89	80.523	Homo_sapiens
ENSORLG00015007621	prdm12b	99	66.931	ENSAPOG00000018234	-	100	66.667	Acanthochromis_polyacanthus
ENSORLG00015007621	prdm12b	99	89.062	ENSAPOG00000016051	prdm12b	100	89.323	Acanthochromis_polyacanthus
ENSORLG00015007621	prdm12b	90	80.352	ENSAMEG00000016234	PRDM12	99	80.352	Ailuropoda_melanoleuca
ENSORLG00015007621	prdm12b	99	77.749	ENSACIG00000005193	-	100	77.892	Amphilophus_citrinellus
ENSORLG00015007621	prdm12b	99	88.918	ENSACIG00000019578	prdm12b	100	88.918	Amphilophus_citrinellus
ENSORLG00015007621	prdm12b	99	88.684	ENSAOCG00000015040	prdm12b	100	88.947	Amphiprion_ocellaris
ENSORLG00015007621	prdm12b	100	71.357	ENSAPEG00000022849	-	100	72.111	Amphiprion_percula
ENSORLG00015007621	prdm12b	99	88.158	ENSAPEG00000015092	prdm12b	100	88.421	Amphiprion_percula
ENSORLG00015007621	prdm12b	99	80.412	ENSATEG00000014595	-	100	80.412	Anabas_testudineus
ENSORLG00015007621	prdm12b	94	79.330	ENSANAG00000020616	PRDM12	97	80.115	Aotus_nancymaae
ENSORLG00015007621	prdm12b	99	85.714	ENSACLG00000011876	prdm12b	100	85.450	Astatotilapia_calliptera
ENSORLG00015007621	prdm12b	99	75.312	ENSACLG00000007631	-	100	76.060	Astatotilapia_calliptera
ENSORLG00015007621	prdm12b	99	78.740	ENSAMXG00000008540	PRDM12	100	77.513	Astyanax_mexicanus
ENSORLG00015007621	prdm12b	99	79.528	ENSAMXG00000033665	prdm12b	100	79.790	Astyanax_mexicanus
ENSORLG00015007621	prdm12b	92	81.322	ENSBTAG00000023797	PRDM12	100	75.989	Bos_taurus
ENSORLG00015007621	prdm12b	92	80.692	ENSCJAG00000020540	PRDM12	100	75.198	Callithrix_jacchus
ENSORLG00015007621	prdm12b	80	79.934	ENSCAFG00000023076	PRDM12	89	79.934	Canis_familiaris
ENSORLG00015007621	prdm12b	92	80.747	ENSCAFG00020024046	PRDM12	91	80.403	Canis_lupus_dingo
ENSORLG00015007621	prdm12b	92	80.747	ENSCHIG00000025005	PRDM12	100	75.726	Capra_hircus
ENSORLG00015007621	prdm12b	94	76.323	ENSCPOG00000005901	PRDM12	99	77.746	Cavia_porcellus
ENSORLG00015007621	prdm12b	92	80.692	ENSCCAG00000037485	PRDM12	99	75.266	Cebus_capucinus
ENSORLG00015007621	prdm12b	92	80.692	ENSCATG00000020327	PRDM12	99	75.266	Cercocebus_atys
ENSORLG00015007621	prdm12b	92	79.827	ENSCLAG00000005499	PRDM12	90	79.827	Chinchilla_lanigera
ENSORLG00015007621	prdm12b	92	80.692	ENSCSAG00000014756	PRDM12	91	79.827	Chlorocebus_sabaeus
ENSORLG00015007621	prdm12b	100	77.045	ENSCPBG00000022628	PRDM12	100	75.989	Chrysemys_picta_bellii
ENSORLG00015007621	prdm12b	92	81.322	ENSCGRG00001015005	Prdm12	90	80.692	Cricetulus_griseus_chok1gshd
ENSORLG00015007621	prdm12b	99	86.243	ENSCVAG00000017166	prdm12b	100	86.243	Cyprinodon_variegatus
ENSORLG00015007621	prdm12b	99	77.179	ENSCVAG00000000944	-	100	77.692	Cyprinodon_variegatus
ENSORLG00015007621	prdm12b	99	81.217	ENSDARG00000007430	prdm12b	100	81.217	Danio_rerio
ENSORLG00015007621	prdm12b	91	80.747	ENSDNOG00000042302	PRDM12	99	75.462	Dasypus_novemcinctus
ENSORLG00015007621	prdm12b	85	66.766	ENSEBUG00000016780	prdm12b	73	67.066	Eptatretus_burgeri
ENSORLG00015007621	prdm12b	94	79.050	ENSEASG00005008472	PRDM12	100	75.462	Equus_asinus_asinus
ENSORLG00015007621	prdm12b	94	79.387	ENSECAG00000005933	PRDM12	100	75.462	Equus_caballus
ENSORLG00015007621	prdm12b	99	81.266	ENSELUG00000013674	PRDM12	100	82.322	Esox_lucius
ENSORLG00015007621	prdm12b	99	81.053	ENSELUG00000009905	prdm12b	100	80.526	Esox_lucius
ENSORLG00015007621	prdm12b	92	80.747	ENSFCAG00000043086	PRDM12	99	75.798	Felis_catus
ENSORLG00015007621	prdm12b	100	77.573	ENSFALG00000001445	PRDM12	89	76.517	Ficedula_albicollis
ENSORLG00015007621	prdm12b	99	73.827	ENSFHEG00000007746	-	100	73.317	Fundulus_heteroclitus
ENSORLG00015007621	prdm12b	99	86.544	ENSFHEG00000003944	prdm12b	100	86.544	Fundulus_heteroclitus
ENSORLG00015007621	prdm12b	99	82.812	ENSGMOG00000011797	prdm12b	100	81.771	Gadus_morhua
ENSORLG00015007621	prdm12b	100	77.573	ENSGALG00000003895	PRDM12	100	76.517	Gallus_gallus
ENSORLG00015007621	prdm12b	100	85.233	ENSGAFG00000010827	prdm12b	100	84.935	Gambusia_affinis
ENSORLG00015007621	prdm12b	100	87.402	ENSGACG00000016713	prdm12b	100	87.139	Gasterosteus_aculeatus
ENSORLG00015007621	prdm12b	100	77.045	ENSGAGG00000014083	PRDM12	100	75.989	Gopherus_agassizii
ENSORLG00015007621	prdm12b	92	80.403	ENSGGOG00000010568	PRDM12	89	80.233	Gorilla_gorilla
ENSORLG00015007621	prdm12b	99	88.889	ENSHBUG00000022878	prdm12b	100	87.831	Haplochromis_burtoni
ENSORLG00015007621	prdm12b	99	75.312	ENSHBUG00000022537	-	93	76.060	Haplochromis_burtoni
ENSORLG00015007621	prdm12b	92	80.460	ENSHGLG00000013939	PRDM12	90	80.115	Heterocephalus_glaber_female
ENSORLG00015007621	prdm12b	99	71.540	ENSHCOG00000021167	-	100	69.713	Hippocampus_comes
ENSORLG00015007621	prdm12b	90	87.861	ENSHCOG00000003663	prdm12b	100	80.303	Hippocampus_comes
ENSORLG00015007621	prdm12b	99	82.322	ENSIPUG00000017053	prdm12b	100	82.058	Ictalurus_punctatus
ENSORLG00015007621	prdm12b	99	77.249	ENSIPUG00000019544	PRDM12	100	76.984	Ictalurus_punctatus
ENSORLG00015007621	prdm12b	96	79.121	ENSSTOG00000005986	PRDM12	86	81.105	Ictidomys_tridecemlineatus
ENSORLG00015007621	prdm12b	92	80.747	ENSJJAG00000005424	Prdm12	100	80.403	Jaculus_jaculus
ENSORLG00015007621	prdm12b	99	81.572	ENSKMAG00000016921	prdm12b	100	81.281	Kryptolebias_marmoratus
ENSORLG00015007621	prdm12b	94	78.212	ENSKMAG00000021205	-	94	77.686	Kryptolebias_marmoratus
ENSORLG00015007621	prdm12b	99	78.756	ENSLBEG00000007776	-	100	78.756	Labrus_bergylta
ENSORLG00015007621	prdm12b	99	86.269	ENSLBEG00000017769	prdm12b	100	85.195	Labrus_bergylta
ENSORLG00015007621	prdm12b	99	77.513	ENSLACG00000017560	PRDM12	99	76.190	Latimeria_chalumnae
ENSORLG00015007621	prdm12b	99	81.152	ENSLOCG00000005429	prdm12b	100	81.152	Lepisosteus_oculatus
ENSORLG00015007621	prdm12b	92	80.403	ENSLAFG00000006979	PRDM12	89	79.943	Loxodonta_africana
ENSORLG00015007621	prdm12b	92	80.403	ENSMFAG00000040322	PRDM12	90	79.827	Macaca_fascicularis
ENSORLG00015007621	prdm12b	92	80.692	ENSMNEG00000037234	PRDM12	99	75.266	Macaca_nemestrina
ENSORLG00015007621	prdm12b	99	73.515	ENSMAMG00000018988	-	100	72.772	Mastacembelus_armatus
ENSORLG00015007621	prdm12b	99	88.684	ENSMAMG00000013212	prdm12b	100	87.071	Mastacembelus_armatus
ENSORLG00015007621	prdm12b	99	74.938	ENSMZEG00005000415	PRDM12	100	75.682	Maylandia_zebra
ENSORLG00015007621	prdm12b	96	78.788	ENSMGAG00000005438	PRDM12	92	82.164	Meleagris_gallopavo
ENSORLG00015007621	prdm12b	94	79.609	ENSMAUG00000013040	Prdm12	90	80.692	Mesocricetus_auratus
ENSORLG00015007621	prdm12b	93	79.545	ENSMICG00000015480	PRDM12	100	75.462	Microcebus_murinus
ENSORLG00015007621	prdm12b	99	77.660	ENSMOCG00000021026	Prdm12	90	80.980	Microtus_ochrogaster
ENSORLG00015007621	prdm12b	100	76.517	ENSMODG00000012108	PRDM12	100	76.517	Monodelphis_domestica
ENSORLG00015007621	prdm12b	85	84.663	ENSMALG00000021901	prdm12b	98	83.436	Monopterus_albus
ENSORLG00015007621	prdm12b	92	81.322	MGP_CAROLIEiJ_G0023414	Prdm12	100	75.654	Mus_caroli
ENSORLG00015007621	prdm12b	92	81.322	ENSMUSG00000079466	Prdm12	100	75.654	Mus_musculus
ENSORLG00015007621	prdm12b	92	81.322	MGP_PahariEiJ_G0024871	Prdm12	100	75.654	Mus_pahari
ENSORLG00015007621	prdm12b	92	81.322	MGP_SPRETEiJ_G0024331	Prdm12	100	75.654	Mus_spretus
ENSORLG00015007621	prdm12b	91	81.739	ENSNGAG00000018480	Prdm12	99	77.236	Nannospalax_galili
ENSORLG00015007621	prdm12b	99	88.918	ENSNBRG00000006727	prdm12b	100	88.654	Neolamprologus_brichardi
ENSORLG00015007621	prdm12b	99	70.984	ENSNBRG00000024312	-	100	71.503	Neolamprologus_brichardi
ENSORLG00015007621	prdm12b	100	68.865	ENSMEUG00000003828	PRDM12	100	68.865	Notamacropus_eugenii
ENSORLG00015007621	prdm12b	92	80.747	ENSOPRG00000008680	PRDM12	100	80.403	Ochotona_princeps
ENSORLG00015007621	prdm12b	94	78.431	ENSODEG00000016282	PRDM12	61	80.814	Octodon_degus
ENSORLG00015007621	prdm12b	63	74.583	ENSOANG00000001043	PRDM12	100	72.500	Ornithorhynchus_anatinus
ENSORLG00015007621	prdm12b	83	80.380	ENSOCUG00000008241	PRDM12	100	78.116	Oryctolagus_cuniculus
ENSORLG00015007621	prdm12b	99	76.590	ENSORLG00000017558	-	100	76.590	Oryzias_latipes
ENSORLG00015007621	prdm12b	100	98.947	ENSORLG00000007114	prdm12b	100	98.947	Oryzias_latipes
ENSORLG00015007621	prdm12b	99	76.845	ENSORLG00020013167	-	100	76.845	Oryzias_latipes_hni
ENSORLG00015007621	prdm12b	100	98.953	ENSORLG00020019565	prdm12b	100	98.953	Oryzias_latipes_hni
ENSORLG00015007621	prdm12b	99	78.497	ENSOMEG00000007762	-	100	77.179	Oryzias_melastigma
ENSORLG00015007621	prdm12b	100	96.354	ENSOMEG00000004134	prdm12b	100	96.354	Oryzias_melastigma
ENSORLG00015007621	prdm12b	92	80.403	ENSOGAG00000007557	PRDM12	99	80.403	Otolemur_garnettii
ENSORLG00015007621	prdm12b	80	79.672	ENSPPAG00000031506	-	99	77.742	Pan_paniscus
ENSORLG00015007621	prdm12b	100	70.000	ENSPPRG00000023024	PRDM12	85	74.425	Panthera_pardus
ENSORLG00015007621	prdm12b	92	80.692	ENSPTRG00000043324	-	89	80.523	Pan_troglodytes
ENSORLG00015007621	prdm12b	92	80.692	ENSPTRG00000021475	PRDM12	89	80.523	Pan_troglodytes
ENSORLG00015007621	prdm12b	92	80.692	ENSPANG00000025967	PRDM12	99	75.266	Papio_anubis
ENSORLG00015007621	prdm12b	99	82.275	ENSPKIG00000007228	prdm12b	100	81.746	Paramormyrops_kingsleyae
ENSORLG00015007621	prdm12b	90	79.009	ENSPKIG00000004305	PRDM12	94	78.363	Paramormyrops_kingsleyae
ENSORLG00015007621	prdm12b	100	77.573	ENSPSIG00000006739	PRDM12	100	76.517	Pelodiscus_sinensis
ENSORLG00015007621	prdm12b	100	85.789	ENSPMGG00000008867	prdm12b	100	85.789	Periophthalmus_magnuspinnatus
ENSORLG00015007621	prdm12b	91	79.885	ENSPMGG00000002356	-	87	80.229	Periophthalmus_magnuspinnatus
ENSORLG00015007621	prdm12b	95	78.788	ENSPEMG00000009969	Prdm12	92	80.342	Peromyscus_maniculatus_bairdii
ENSORLG00015007621	prdm12b	100	76.517	ENSPCIG00000024119	PRDM12	100	76.517	Phascolarctos_cinereus
ENSORLG00015007621	prdm12b	99	87.368	ENSPFOG00000019841	prdm12b	100	85.789	Poecilia_formosa
ENSORLG00015007621	prdm12b	100	84.278	ENSPLAG00000016626	prdm12b	100	84.021	Poecilia_latipinna
ENSORLG00015007621	prdm12b	96	85.294	ENSPMEG00000016698	prdm12b	99	84.718	Poecilia_mexicana
ENSORLG00015007621	prdm12b	100	84.062	ENSPREG00000015073	prdm12b	100	83.805	Poecilia_reticulata
ENSORLG00015007621	prdm12b	95	73.370	ENSPREG00000003211	-	94	72.283	Poecilia_reticulata
ENSORLG00015007621	prdm12b	94	79.666	ENSPPYG00000019694	PRDM12	93	80.814	Pongo_abelii
ENSORLG00015007621	prdm12b	92	80.747	ENSPCOG00000022255	PRDM12	90	80.403	Propithecus_coquereli
ENSORLG00015007621	prdm12b	92	80.403	ENSPVAG00000001511	PRDM12	90	80.403	Pteropus_vampyrus
ENSORLG00015007621	prdm12b	99	74.938	ENSPNYG00000013589	-	100	75.682	Pundamilia_nyererei
ENSORLG00015007621	prdm12b	99	88.360	ENSPNYG00000009607	prdm12b	100	88.095	Pundamilia_nyererei
ENSORLG00015007621	prdm12b	99	81.266	ENSPNAG00000024532	prdm12b	100	81.266	Pygocentrus_nattereri
ENSORLG00015007621	prdm12b	99	77.720	ENSPNAG00000013396	PRDM12	100	77.003	Pygocentrus_nattereri
ENSORLG00015007621	prdm12b	92	81.322	ENSRNOG00000009218	Prdm12	100	75.654	Rattus_norvegicus
ENSORLG00015007621	prdm12b	88	80.838	ENSRBIG00000042712	PRDM12	90	79.651	Rhinopithecus_bieti
ENSORLG00015007621	prdm12b	89	82.006	ENSRROG00000043554	PRDM12	100	81.065	Rhinopithecus_roxellana
ENSORLG00015007621	prdm12b	100	76.316	ENSSHAG00000015972	PRDM12	100	76.316	Sarcophilus_harrisii
ENSORLG00015007621	prdm12b	99	87.692	ENSSMAG00000003754	prdm12b	100	85.604	Scophthalmus_maximus
ENSORLG00015007621	prdm12b	99	80.311	ENSSDUG00000019071	-	100	80.311	Seriola_dumerili
ENSORLG00015007621	prdm12b	99	88.571	ENSSDUG00000023498	prdm12b	100	88.312	Seriola_dumerili
ENSORLG00015007621	prdm12b	99	89.791	ENSSLDG00000009557	prdm12b	100	89.529	Seriola_lalandi_dorsalis
ENSORLG00015007621	prdm12b	99	76.842	ENSSLDG00000013562	-	100	76.640	Seriola_lalandi_dorsalis
ENSORLG00015007621	prdm12b	100	77.045	ENSSPUG00000013424	PRDM12	100	75.989	Sphenodon_punctatus
ENSORLG00015007621	prdm12b	99	88.451	ENSSPAG00000018824	prdm12b	100	88.451	Stegastes_partitus
ENSORLG00015007621	prdm12b	99	70.437	ENSSPAG00000022420	-	100	71.208	Stegastes_partitus
ENSORLG00015007621	prdm12b	92	80.747	ENSSSCG00000005703	PRDM12	91	80.403	Sus_scrofa
ENSORLG00015007621	prdm12b	99	77.309	ENSTRUG00000013239	-	100	76.517	Takifugu_rubripes
ENSORLG00015007621	prdm12b	99	85.263	ENSTRUG00000018659	prdm12b	100	85.263	Takifugu_rubripes
ENSORLG00015007621	prdm12b	99	86.053	ENSTNIG00000009020	prdm12b	99	86.053	Tetraodon_nigroviridis
ENSORLG00015007621	prdm12b	99	74.016	ENSTNIG00000005859	-	99	72.966	Tetraodon_nigroviridis
ENSORLG00015007621	prdm12b	92	80.403	ENSUAMG00000009653	PRDM12	91	80.403	Ursus_americanus
ENSORLG00015007621	prdm12b	92	80.747	ENSVVUG00000027662	PRDM12	78	81.105	Vulpes_vulpes
ENSORLG00015007621	prdm12b	100	85.379	ENSXCOG00000002836	prdm12b	100	84.935	Xiphophorus_couchianus
ENSORLG00015007621	prdm12b	99	75.123	ENSXMAG00000028012	-	100	74.690	Xiphophorus_maculatus
ENSORLG00015007621	prdm12b	99	86.126	ENSXMAG00000005537	prdm12b	100	85.677	Xiphophorus_maculatus