EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015007739 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 28212 bases
Position: chr1:9998433-10026644
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015006817	ResIII	PF04851.15	1.5e-08	1	1
ENSORLP00015026206	ResIII	PF04851.15	1.9e-08	1	1
ENSORLP00015026206	BRK	PF07533.16	6.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015003615	-	1940	-	ENSORLP00015026148	504 (aa)	-	-
ENSORLT00015003496	-	7248	-	ENSORLP00015026206	1657 (aa)	-	-
ENSORLT00015003566	-	4173	-	ENSORLP00015006817	1390 (aa)	-	-

Gene Model

Click here to download ENSORLG00015007739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015007739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015007739	-	97	72.404	ENSORLG00015006289	SMARCA2	94	73.191
ENSORLG00015007739	-	50	47.500	ENSORLG00015010960	hells	60	47.500
ENSORLG00015007739	-	95	82.817	ENSORLG00015016560	smarca4a	99	83.657

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015007739	-	99	82.427	ENSG00000127616	SMARCA4	99	95.652	Homo_sapiens
ENSORLG00015007739	-	74	87.721	ENSAPOG00000003509	smarca4a	98	86.911	Acanthochromis_polyacanthus
ENSORLG00015007739	-	97	91.492	ENSAPOG00000004542	SMARCA4	100	92.286	Acanthochromis_polyacanthus
ENSORLG00015007739	-	99	79.378	ENSAMEG00000010868	SMARCA4	99	79.371	Ailuropoda_melanoleuca
ENSORLG00015007739	-	98	88.591	ENSACIG00000003035	-	96	88.187	Amphilophus_citrinellus
ENSORLG00015007739	-	95	85.162	ENSACIG00000021550	smarca4a	98	85.043	Amphilophus_citrinellus
ENSORLG00015007739	-	93	84.226	ENSAOCG00000019167	smarca4a	99	83.274	Amphiprion_ocellaris
ENSORLG00015007739	-	98	85.080	ENSAOCG00000009450	-	87	96.431	Amphiprion_ocellaris
ENSORLG00015007739	-	93	84.301	ENSAPEG00000015559	smarca4a	99	83.345	Amphiprion_percula
ENSORLG00015007739	-	100	93.112	ENSAPEG00000023108	-	100	92.993	Amphiprion_percula
ENSORLG00015007739	-	95	84.577	ENSATEG00000011524	smarca4a	99	84.195	Anabas_testudineus
ENSORLG00015007739	-	99	93.167	ENSATEG00000001094	-	98	92.923	Anabas_testudineus
ENSORLG00015007739	-	99	82.346	ENSANAG00000036991	SMARCA4	99	80.132	Aotus_nancymaae
ENSORLG00015007739	-	95	93.962	ENSACLG00000008638	-	98	93.648	Astatotilapia_calliptera
ENSORLG00015007739	-	95	83.344	ENSACLG00000000163	smarca4a	96	84.912	Astatotilapia_calliptera
ENSORLG00015007739	-	97	87.268	ENSAMXG00000011238	-	100	86.757	Astyanax_mexicanus
ENSORLG00015007739	-	98	81.619	ENSAMXG00000021023	smarca4a	99	79.397	Astyanax_mexicanus
ENSORLG00015007739	-	99	82.663	ENSBTAG00000019220	SMARCA4	99	83.242	Bos_taurus
ENSORLG00015007739	-	97	86.372	ENSCJAG00000005936	SMARCA4	99	79.569	Callithrix_jacchus
ENSORLG00015007739	-	99	82.546	ENSCAFG00000017584	SMARCA4	99	83.253	Canis_familiaris
ENSORLG00015007739	-	92	89.326	ENSCAFG00020024620	SMARCA4	98	83.243	Canis_lupus_dingo
ENSORLG00015007739	-	98	79.755	ENSCHIG00000015318	SMARCA4	99	79.636	Capra_hircus
ENSORLG00015007739	-	99	82.198	ENSTSYG00000012966	SMARCA4	99	83.252	Carlito_syrichta
ENSORLG00015007739	-	98	77.831	ENSCAPG00000015932	SMARCA4	89	90.104	Cavia_aperea
ENSORLG00015007739	-	99	82.809	ENSCPOG00000015549	SMARCA4	99	83.303	Cavia_porcellus
ENSORLG00015007739	-	99	79.251	ENSCCAG00000031660	SMARCA4	98	80.253	Cebus_capucinus
ENSORLG00015007739	-	99	82.427	ENSCATG00000029530	SMARCA4	99	83.132	Cercocebus_atys
ENSORLG00015007739	-	99	82.974	ENSCLAG00000011946	SMARCA4	99	83.556	Chinchilla_lanigera
ENSORLG00015007739	-	99	82.181	ENSCPBG00000009994	SMARCA4	99	83.293	Chrysemys_picta_bellii
ENSORLG00015007739	-	99	82.427	ENSCANG00000036013	SMARCA4	99	83.182	Colobus_angolensis_palliatus
ENSORLG00015007739	-	99	83.144	ENSCGRG00001016732	Smarca4	99	83.182	Cricetulus_griseus_chok1gshd
ENSORLG00015007739	-	96	87.792	ENSCGRG00000017242	Smarca4	99	83.182	Cricetulus_griseus_crigri
ENSORLG00015007739	-	95	83.661	ENSCSEG00000014771	smarca4a	99	83.861	Cynoglossus_semilaevis
ENSORLG00015007739	-	95	83.291	ENSCVAG00000006979	smarca4a	99	83.647	Cyprinodon_variegatus
ENSORLG00015007739	-	99	87.584	ENSCVAG00000003018	-	89	92.931	Cyprinodon_variegatus
ENSORLG00015007739	-	97	84.498	ENSDARG00000077226	smarca4a	99	84.887	Danio_rerio
ENSORLG00015007739	-	93	83.108	ENSDARG00000104339	SMARCA4	94	84.540	Danio_rerio
ENSORLG00015007739	-	99	75.959	ENSDNOG00000048847	SMARCA4	90	89.924	Dasypus_novemcinctus
ENSORLG00015007739	-	91	83.196	ENSDORG00000002544	Smarca4	91	78.430	Dipodomys_ordii
ENSORLG00015007739	-	94	72.108	ENSETEG00000013361	SMARCA4	94	72.080	Echinops_telfairi
ENSORLG00015007739	-	96	87.387	ENSEASG00005006167	SMARCA4	99	81.402	Equus_asinus_asinus
ENSORLG00015007739	-	99	82.905	ENSECAG00000008334	SMARCA4	99	83.122	Equus_caballus
ENSORLG00015007739	-	93	81.945	ENSELUG00000023232	-	98	85.694	Esox_lucius
ENSORLG00015007739	-	99	82.761	ENSELUG00000010247	smarca4a	99	82.459	Esox_lucius
ENSORLG00015007739	-	99	82.518	ENSFCAG00000004894	SMARCA4	99	83.152	Felis_catus
ENSORLG00015007739	-	92	81.270	ENSFALG00000004208	SMARCA4	95	81.112	Ficedula_albicollis
ENSORLG00015007739	-	96	87.468	ENSFDAG00000012237	SMARCA4	97	83.680	Fukomys_damarensis
ENSORLG00015007739	-	95	83.125	ENSFHEG00000010182	smarca4a	99	83.032	Fundulus_heteroclitus
ENSORLG00015007739	-	100	93.126	ENSFHEG00000007902	-	100	92.887	Fundulus_heteroclitus
ENSORLG00015007739	-	87	79.817	ENSGMOG00000002649	smarca4a	85	80.655	Gadus_morhua
ENSORLG00015007739	-	90	83.962	ENSGMOG00000005756	-	93	83.004	Gadus_morhua
ENSORLG00015007739	-	77	87.332	ENSGALG00000047145	SMARCA4	100	81.068	Gallus_gallus
ENSORLG00015007739	-	98	86.749	ENSGAFG00000008827	-	99	85.429	Gambusia_affinis
ENSORLG00015007739	-	87	86.983	ENSGAFG00000014900	smarca4a	96	87.491	Gambusia_affinis
ENSORLG00015007739	-	99	85.146	ENSGACG00000016033	-	100	84.444	Gasterosteus_aculeatus
ENSORLG00015007739	-	95	83.733	ENSGACG00000006691	smarca4a	99	82.706	Gasterosteus_aculeatus
ENSORLG00015007739	-	99	82.209	ENSGAGG00000016757	SMARCA4	99	83.323	Gopherus_agassizii
ENSORLG00015007739	-	99	82.427	ENSGGOG00000009882	SMARCA4	99	83.132	Gorilla_gorilla
ENSORLG00015007739	-	95	84.154	ENSHBUG00000021172	smarca4a	99	84.498	Haplochromis_burtoni
ENSORLG00015007739	-	100	94.404	ENSHBUG00000005447	-	100	94.224	Haplochromis_burtoni
ENSORLG00015007739	-	99	82.153	ENSHGLG00000010519	SMARCA4	99	82.902	Heterocephalus_glaber_female
ENSORLG00015007739	-	99	82.269	ENSHGLG00100013774	SMARCA4	99	82.779	Heterocephalus_glaber_male
ENSORLG00015007739	-	91	84.155	ENSHCOG00000009510	smarca4a	96	84.270	Hippocampus_comes
ENSORLG00015007739	-	99	84.775	ENSIPUG00000006107	smarca4a	99	85.009	Ictalurus_punctatus
ENSORLG00015007739	-	97	85.381	ENSIPUG00000016346	-	89	90.111	Ictalurus_punctatus
ENSORLG00015007739	-	99	83.144	ENSSTOG00000007939	SMARCA4	99	83.182	Ictidomys_tridecemlineatus
ENSORLG00015007739	-	99	81.243	ENSJJAG00000012877	Smarca4	99	81.091	Jaculus_jaculus
ENSORLG00015007739	-	97	93.395	ENSKMAG00000019518	-	100	92.712	Kryptolebias_marmoratus
ENSORLG00015007739	-	96	82.804	ENSKMAG00000011931	smarca4a	99	83.840	Kryptolebias_marmoratus
ENSORLG00015007739	-	95	87.558	ENSLBEG00000020655	-	99	85.952	Labrus_bergylta
ENSORLG00015007739	-	94	78.845	ENSLBEG00000017383	smarca4a	97	80.554	Labrus_bergylta
ENSORLG00015007739	-	53	75.901	ENSLACG00000015309	SMARCA4	100	75.679	Latimeria_chalumnae
ENSORLG00015007739	-	99	80.473	ENSLOCG00000007820	smarca4a	99	78.744	Lepisosteus_oculatus
ENSORLG00015007739	-	99	82.458	ENSLAFG00000001433	SMARCA4	99	83.092	Loxodonta_africana
ENSORLG00015007739	-	99	82.427	ENSMFAG00000032146	SMARCA4	98	83.122	Macaca_fascicularis
ENSORLG00015007739	-	99	82.567	ENSMMUG00000012042	SMARCA4	97	90.094	Macaca_mulatta
ENSORLG00015007739	-	99	82.406	ENSMNEG00000028512	SMARCA4	99	83.111	Macaca_nemestrina
ENSORLG00015007739	-	99	82.198	ENSMLEG00000034976	SMARCA4	99	82.911	Mandrillus_leucophaeus
ENSORLG00015007739	-	95	85.063	ENSMAMG00000009256	smarca4a	98	89.492	Mastacembelus_armatus
ENSORLG00015007739	-	100	93.019	ENSMAMG00000002841	-	100	92.840	Mastacembelus_armatus
ENSORLG00015007739	-	95	94.617	ENSMZEG00005023861	-	98	94.427	Maylandia_zebra
ENSORLG00015007739	-	95	84.154	ENSMZEG00005003889	smarca4a	99	84.498	Maylandia_zebra
ENSORLG00015007739	-	99	82.886	ENSMAUG00000020731	Smarca4	99	83.152	Mesocricetus_auratus
ENSORLG00015007739	-	99	82.458	ENSMICG00000009806	SMARCA4	99	83.092	Microcebus_murinus
ENSORLG00015007739	-	99	82.995	ENSMOCG00000022209	Smarca4	99	83.031	Microtus_ochrogaster
ENSORLG00015007739	-	91	81.974	ENSMMOG00000007571	smarca4a	98	83.238	Mola_mola
ENSORLG00015007739	-	98	89.580	ENSMMOG00000008466	-	93	89.341	Mola_mola
ENSORLG00015007739	-	99	81.749	ENSMODG00000006287	SMARCA4	99	81.354	Monodelphis_domestica
ENSORLG00015007739	-	95	83.438	ENSMALG00000003388	smarca4a	99	84.195	Monopterus_albus
ENSORLG00015007739	-	97	90.353	ENSMALG00000021534	-	100	90.497	Monopterus_albus
ENSORLG00015007739	-	99	83.144	MGP_CAROLIEiJ_G0031879	Smarca4	100	85.917	Mus_caroli
ENSORLG00015007739	-	99	83.144	ENSMUSG00000032187	Smarca4	99	85.917	Mus_musculus
ENSORLG00015007739	-	99	83.263	MGP_PahariEiJ_G0014745	Smarca4	100	86.087	Mus_pahari
ENSORLG00015007739	-	99	83.144	MGP_SPRETEiJ_G0033003	Smarca4	100	85.917	Mus_spretus
ENSORLG00015007739	-	99	82.546	ENSMPUG00000005711	SMARCA4	99	83.182	Mustela_putorius_furo
ENSORLG00015007739	-	99	83.383	ENSMLUG00000004491	-	99	83.364	Myotis_lucifugus
ENSORLG00015007739	-	99	82.874	ENSNGAG00000021852	Smarca4	99	83.152	Nannospalax_galili
ENSORLG00015007739	-	97	91.822	ENSNBRG00000018865	-	100	91.320	Neolamprologus_brichardi
ENSORLG00015007739	-	94	81.413	ENSNBRG00000011457	smarca4a	96	82.521	Neolamprologus_brichardi
ENSORLG00015007739	-	98	85.198	ENSNLEG00000012389	SMARCA4	94	80.214	Nomascus_leucogenys
ENSORLG00015007739	-	86	93.103	ENSOPRG00000000885	-	76	93.103	Ochotona_princeps
ENSORLG00015007739	-	99	81.142	ENSODEG00000017127	SMARCA4	99	81.084	Octodon_degus
ENSORLG00015007739	-	99	94.642	ENSONIG00000018040	-	100	94.461	Oreochromis_niloticus
ENSORLG00015007739	-	95	84.649	ENSONIG00000008196	smarca4a	99	84.498	Oreochromis_niloticus
ENSORLG00015007739	-	98	77.608	ENSOCUG00000001787	SMARCA4	98	77.696	Oryctolagus_cuniculus
ENSORLG00015007739	-	95	82.565	ENSORLG00000015452	smarca4a	99	83.536	Oryzias_latipes
ENSORLG00015007739	-	100	99.277	ENSORLG00000003955	-	100	99.277	Oryzias_latipes
ENSORLG00015007739	-	95	82.754	ENSORLG00020004611	smarca4a	99	83.718	Oryzias_latipes_hni
ENSORLG00015007739	-	100	99.398	ENSORLG00020009728	-	100	99.398	Oryzias_latipes_hni
ENSORLG00015007739	-	100	98.255	ENSOMEG00000016626	-	100	98.255	Oryzias_melastigma
ENSORLG00015007739	-	95	81.784	ENSOMEG00000007486	smarca4a	99	84.114	Oryzias_melastigma
ENSORLG00015007739	-	96	85.640	ENSOGAG00000016148	SMARCA4	100	81.595	Otolemur_garnettii
ENSORLG00015007739	-	97	84.121	ENSOARG00000017454	SMARCA4	98	83.446	Ovis_aries
ENSORLG00015007739	-	99	82.427	ENSPPAG00000043191	SMARCA4	99	83.132	Pan_paniscus
ENSORLG00015007739	-	99	82.518	ENSPPRG00000000064	SMARCA4	99	83.152	Panthera_pardus
ENSORLG00015007739	-	93	85.102	ENSPTIG00000017447	SMARCA4	99	77.864	Panthera_tigris_altaica
ENSORLG00015007739	-	99	82.427	ENSPTRG00000010488	SMARCA4	99	83.132	Pan_troglodytes
ENSORLG00015007739	-	99	82.525	ENSPANG00000011042	SMARCA4	98	83.222	Papio_anubis
ENSORLG00015007739	-	95	86.418	ENSPKIG00000007770	SMARCA4	99	85.879	Paramormyrops_kingsleyae
ENSORLG00015007739	-	95	86.122	ENSPKIG00000010087	-	99	84.765	Paramormyrops_kingsleyae
ENSORLG00015007739	-	98	75.573	ENSPSIG00000005547	SMARCA4	99	77.284	Pelodiscus_sinensis
ENSORLG00015007739	-	99	83.055	ENSPEMG00000020389	Smarca4	99	83.092	Peromyscus_maniculatus_bairdii
ENSORLG00015007739	-	99	83.194	ENSPCIG00000017138	SMARCA4	99	83.354	Phascolarctos_cinereus
ENSORLG00015007739	-	100	92.413	ENSPFOG00000012930	-	100	92.234	Poecilia_formosa
ENSORLG00015007739	-	96	82.026	ENSPFOG00000007892	smarca4a	99	82.399	Poecilia_formosa
ENSORLG00015007739	-	98	85.040	ENSPLAG00000018616	-	98	89.010	Poecilia_latipinna
ENSORLG00015007739	-	96	82.273	ENSPLAG00000014294	smarca4a	99	82.520	Poecilia_latipinna
ENSORLG00015007739	-	92	83.225	ENSPMEG00000003725	smarca4a	96	83.031	Poecilia_mexicana
ENSORLG00015007739	-	95	93.114	ENSPMEG00000008929	-	96	92.672	Poecilia_mexicana
ENSORLG00015007739	-	95	79.722	ENSPREG00000014608	smarca4a	99	82.431	Poecilia_reticulata
ENSORLG00015007739	-	95	92.956	ENSPREG00000014823	-	96	92.642	Poecilia_reticulata
ENSORLG00015007739	-	99	80.832	ENSPPYG00000009568	SMARCA4	99	80.794	Pongo_abelii
ENSORLG00015007739	-	79	80.795	ENSPCAG00000014054	SMARCA4	77	80.795	Procavia_capensis
ENSORLG00015007739	-	99	82.339	ENSPCOG00000023011	SMARCA4	99	82.971	Propithecus_coquereli
ENSORLG00015007739	-	95	73.518	ENSPVAG00000007787	SMARCA4	94	73.268	Pteropus_vampyrus
ENSORLG00015007739	-	98	88.195	ENSPNYG00000023995	-	98	86.755	Pundamilia_nyererei
ENSORLG00015007739	-	95	81.697	ENSPNYG00000000717	smarca4a	96	84.848	Pundamilia_nyererei
ENSORLG00015007739	-	93	89.843	ENSPNAG00000024136	smarca4a	98	80.781	Pygocentrus_nattereri
ENSORLG00015007739	-	97	87.257	ENSPNAG00000006636	-	97	86.822	Pygocentrus_nattereri
ENSORLG00015007739	-	99	83.144	ENSRNOG00000009271	Smarca4	99	83.243	Rattus_norvegicus
ENSORLG00015007739	-	99	82.367	ENSRBIG00000038696	SMARCA4	98	83.122	Rhinopithecus_bieti
ENSORLG00015007739	-	99	82.427	ENSRROG00000045509	SMARCA4	99	83.192	Rhinopithecus_roxellana
ENSORLG00015007739	-	99	82.506	ENSSBOG00000026896	SMARCA4	99	83.122	Saimiri_boliviensis_boliviensis
ENSORLG00015007739	-	99	83.134	ENSSHAG00000001642	SMARCA4	99	83.232	Sarcophilus_harrisii
ENSORLG00015007739	-	99	85.957	ENSSFOG00015013823	smarca4	99	85.046	Scleropages_formosus
ENSORLG00015007739	-	95	81.121	ENSSFOG00015009921	-	94	90.923	Scleropages_formosus
ENSORLG00015007739	-	100	90.730	ENSSMAG00000014082	-	100	90.789	Scophthalmus_maximus
ENSORLG00015007739	-	95	83.417	ENSSMAG00000003200	smarca4a	99	83.122	Scophthalmus_maximus
ENSORLG00015007739	-	95	79.523	ENSSDUG00000017298	smarca4a	99	78.874	Seriola_dumerili
ENSORLG00015007739	-	99	92.875	ENSSDUG00000005388	-	98	93.538	Seriola_dumerili
ENSORLG00015007739	-	95	83.907	ENSSLDG00000024486	smarca4a	99	84.258	Seriola_lalandi_dorsalis
ENSORLG00015007739	-	95	90.633	ENSSLDG00000023663	-	97	90.443	Seriola_lalandi_dorsalis
ENSORLG00015007739	-	62	96.894	ENSSARG00000013477	SMARCA4	82	96.894	Sorex_araneus
ENSORLG00015007739	-	95	80.425	ENSSPUG00000004558	SMARCA4	98	79.912	Sphenodon_punctatus
ENSORLG00015007739	-	95	83.469	ENSSPAG00000004248	smarca4a	99	83.776	Stegastes_partitus
ENSORLG00015007739	-	100	92.883	ENSSPAG00000012533	-	100	93.060	Stegastes_partitus
ENSORLG00015007739	-	99	82.578	ENSSSCG00000013629	SMARCA4	99	83.152	Sus_scrofa
ENSORLG00015007739	-	58	79.835	ENSTGUG00000015488	-	98	84.010	Taeniopygia_guttata
ENSORLG00015007739	-	95	91.244	ENSTRUG00000001378	SMARCA4	98	91.307	Takifugu_rubripes
ENSORLG00015007739	-	94	79.350	ENSTRUG00000004885	smarca4a	99	79.789	Takifugu_rubripes
ENSORLG00015007739	-	99	88.962	ENSTNIG00000004536	SMARCA4	100	89.022	Tetraodon_nigroviridis
ENSORLG00015007739	-	75	83.265	ENSTNIG00000004859	-	96	86.445	Tetraodon_nigroviridis
ENSORLG00015007739	-	99	80.516	ENSTTRG00000009519	SMARCA4	99	79.881	Tursiops_truncatus
ENSORLG00015007739	-	99	82.606	ENSUAMG00000014661	SMARCA4	99	83.243	Ursus_americanus
ENSORLG00015007739	-	94	90.193	ENSUMAG00000022005	SMARCA4	98	90.053	Ursus_maritimus
ENSORLG00015007739	-	99	82.546	ENSVVUG00000017820	SMARCA4	96	83.243	Vulpes_vulpes
ENSORLG00015007739	-	99	78.274	ENSXETG00000009355	smarca4	99	76.059	Xenopus_tropicalis
ENSORLG00015007739	-	99	85.723	ENSXCOG00000013494	-	98	85.976	Xiphophorus_couchianus
ENSORLG00015007739	-	96	82.167	ENSXMAG00000006321	smarca4a	99	82.719	Xiphophorus_maculatus
ENSORLG00015007739	-	100	93.153	ENSXMAG00000007030	-	100	93.093	Xiphophorus_maculatus