EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015008051 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 146213 bases
Position: chr21:15768494-15914706
Accession: 101158397
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015007240	KH_1	PF00013.29	1.1e-54	1	3
ENSORLP00015007240	KH_1	PF00013.29	1.1e-54	2	3
ENSORLP00015007240	KH_1	PF00013.29	1.1e-54	3	3
ENSORLP00015007240	KH_2	PF07650.17	2.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015002895	-	3913	-	ENSORLP00015007240	327 (aa)	XP_011487856	UPI0005CC52F6

Gene Model

Click here to download ENSORLG00015008051's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015008051's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015008051	-	72	36.842	ENSORLG00015008779	fubp1	57	39.394
ENSORLG00015008051	-	93	31.544	ENSORLG00015003412	-	63	31.544
ENSORLG00015008051	-	95	97.097	ENSORLG00015000429	pcbp3	97	97.097
ENSORLG00015008051	-	78	52.857	ENSORLG00015008262	hnrnpk	58	52.857
ENSORLG00015008051	-	77	52.055	ENSORLG00015015118	hnrpkl	58	46.914
ENSORLG00015008051	-	92	32.394	ENSORLG00015011181	igf2bp1	57	32.394
ENSORLG00015008051	-	89	39.062	ENSORLG00015007684	fubp3	61	39.062
ENSORLG00015008051	-	95	77.885	ENSORLG00015010679	pcbp2	97	77.885
ENSORLG00015008051	-	73	39.706	ENSORLG00015000650	nova1	54	39.706
ENSORLG00015008051	-	90	38.235	ENSORLG00015007890	-	60	38.235
ENSORLG00015008051	-	88	40.323	ENSORLG00015003791	khsrp	57	39.683
ENSORLG00015008051	-	97	58.187	ENSORLG00015019262	pcbp4	70	56.818
ENSORLG00015008051	-	94	35.955	ENSORLG00015001778	igf2bp2b	65	35.955
ENSORLG00015008051	-	92	62.883	ENSORLG00015017819	-	71	62.883
ENSORLG00015008051	-	94	34.507	ENSORLG00015015563	igf2bp3	64	34.507
ENSORLG00015008051	-	93	80.198	ENSORLG00015013439	PCBP2	95	80.198

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015008051	-	95	94.516	ENSAPOG00000020003	pcbp3	86	94.516	Acanthochromis_polyacanthus
ENSORLG00015008051	-	99	98.773	ENSAPOG00000016582	-	99	98.773	Acanthochromis_polyacanthus
ENSORLG00015008051	-	95	90.303	ENSAMEG00000001697	-	98	86.087	Ailuropoda_melanoleuca
ENSORLG00015008051	-	98	92.661	ENSACIG00000002739	-	99	92.661	Amphilophus_citrinellus
ENSORLG00015008051	-	99	87.966	ENSACIG00000010933	pcbp3	99	87.966	Amphilophus_citrinellus
ENSORLG00015008051	-	95	97.097	ENSAOCG00000008592	-	98	97.097	Amphiprion_ocellaris
ENSORLG00015008051	-	93	93.151	ENSAOCG00000007806	-	99	93.151	Amphiprion_ocellaris
ENSORLG00015008051	-	99	89.744	ENSAPEG00000008011	pcbp3	99	89.744	Amphiprion_percula
ENSORLG00015008051	-	98	95.625	ENSAPEG00000005209	-	99	95.625	Amphiprion_percula
ENSORLG00015008051	-	95	87.988	ENSATEG00000015787	-	100	87.988	Anabas_testudineus
ENSORLG00015008051	-	98	95.000	ENSATEG00000009833	-	99	95.000	Anabas_testudineus
ENSORLG00015008051	-	95	91.692	ENSAPLG00000002975	-	98	91.692	Anas_platyrhynchos
ENSORLG00015008051	-	98	75.543	ENSAPLG00000008951	-	82	75.543	Anas_platyrhynchos
ENSORLG00015008051	-	97	82.059	ENSACAG00000009819	-	98	82.059	Anolis_carolinensis
ENSORLG00015008051	-	95	84.463	ENSACAG00000004607	-	98	84.463	Anolis_carolinensis
ENSORLG00015008051	-	92	94.894	ENSANAG00000030702	-	99	94.894	Aotus_nancymaae
ENSORLG00015008051	-	99	98.160	ENSACLG00000003801	-	99	98.160	Astatotilapia_calliptera
ENSORLG00015008051	-	99	89.459	ENSACLG00000011835	pcbp3	99	89.459	Astatotilapia_calliptera
ENSORLG00015008051	-	99	91.404	ENSAMXG00000003440	pcbp3	99	91.404	Astyanax_mexicanus
ENSORLG00015008051	-	93	67.674	ENSAMXG00000001760	zgc:110045	73	67.674	Astyanax_mexicanus
ENSORLG00015008051	-	95	92.258	ENSAMXG00000013588	-	100	92.258	Astyanax_mexicanus
ENSORLG00015008051	-	88	97.380	ENSCAFG00020019472	-	81	97.380	Canis_lupus_dingo
ENSORLG00015008051	-	95	95.527	ENSCSAG00000007440	-	89	95.527	Chlorocebus_sabaeus
ENSORLG00015008051	-	99	80.516	ENSCPBG00000000733	-	77	80.516	Chrysemys_picta_bellii
ENSORLG00015008051	-	97	94.025	ENSCPBG00000012151	-	95	94.025	Chrysemys_picta_bellii
ENSORLG00015008051	-	95	93.548	ENSCSEG00000000822	pcbp3	99	93.548	Cynoglossus_semilaevis
ENSORLG00015008051	-	97	77.326	ENSCSEG00000016984	-	99	77.326	Cynoglossus_semilaevis
ENSORLG00015008051	-	99	98.160	ENSCVAG00000005262	-	99	98.160	Cyprinodon_variegatus
ENSORLG00015008051	-	99	89.459	ENSCVAG00000014482	pcbp3	99	89.459	Cyprinodon_variegatus
ENSORLG00015008051	-	99	91.691	ENSDARG00000054378	pcbp3	99	91.691	Danio_rerio
ENSORLG00015008051	-	95	81.994	ENSETEG00000015988	-	97	81.994	Echinops_telfairi
ENSORLG00015008051	-	93	81.759	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSORLG00015008051	-	91	69.721	ENSEBUG00000005495	pcbp3	75	69.721	Eptatretus_burgeri
ENSORLG00015008051	-	93	71.685	ENSEBUG00000016192	pcbp3	99	73.606	Eptatretus_burgeri
ENSORLG00015008051	-	99	89.773	ENSELUG00000003521	pcbp3	99	89.773	Esox_lucius
ENSORLG00015008051	-	99	97.546	ENSELUG00000001560	-	90	97.546	Esox_lucius
ENSORLG00015008051	-	95	95.498	ENSFALG00000003949	-	97	95.498	Ficedula_albicollis
ENSORLG00015008051	-	98	75.815	ENSFALG00000004411	-	77	75.815	Ficedula_albicollis
ENSORLG00015008051	-	97	92.429	ENSFHEG00000016615	pcbp3	97	92.429	Fundulus_heteroclitus
ENSORLG00015008051	-	98	94.688	ENSFHEG00000006539	-	99	94.688	Fundulus_heteroclitus
ENSORLG00015008051	-	94	81.381	ENSGMOG00000011992	pcbp3	96	81.381	Gadus_morhua
ENSORLG00015008051	-	94	70.821	ENSGMOG00000008611	-	99	70.821	Gadus_morhua
ENSORLG00015008051	-	92	84.308	ENSGALG00000013155	-	98	81.346	Gallus_gallus
ENSORLG00015008051	-	95	81.921	ENSGALG00000004394	-	98	89.674	Gallus_gallus
ENSORLG00015008051	-	99	98.466	ENSGAFG00000010274	-	99	98.466	Gambusia_affinis
ENSORLG00015008051	-	95	86.186	ENSGAFG00000011430	pcbp3	96	86.186	Gambusia_affinis
ENSORLG00015008051	-	98	90.323	ENSGACG00000002266	-	99	90.323	Gasterosteus_aculeatus
ENSORLG00015008051	-	95	81.303	ENSGACG00000014955	-	97	81.303	Gasterosteus_aculeatus
ENSORLG00015008051	-	89	89.513	ENSGAGG00000000271	-	100	89.513	Gopherus_agassizii
ENSORLG00015008051	-	76	87.368	ENSGAGG00000006956	-	76	87.368	Gopherus_agassizii
ENSORLG00015008051	-	95	93.871	ENSHBUG00000010697	pcbp3	98	93.871	Haplochromis_burtoni
ENSORLG00015008051	-	99	98.160	ENSHBUG00000021782	-	99	98.160	Haplochromis_burtoni
ENSORLG00015008051	-	99	89.714	ENSHCOG00000017868	pcbp3	99	89.714	Hippocampus_comes
ENSORLG00015008051	-	98	92.188	ENSHCOG00000006067	-	99	92.188	Hippocampus_comes
ENSORLG00015008051	-	98	94.062	ENSIPUG00000006238	pcbp3	99	94.062	Ictalurus_punctatus
ENSORLG00015008051	-	99	97.546	ENSKMAG00000018530	-	99	97.546	Kryptolebias_marmoratus
ENSORLG00015008051	-	99	89.744	ENSKMAG00000003046	pcbp3	99	89.744	Kryptolebias_marmoratus
ENSORLG00015008051	-	96	93.291	ENSLBEG00000006201	pcbp3	96	93.291	Labrus_bergylta
ENSORLG00015008051	-	99	82.175	ENSLBEG00000006542	-	99	82.175	Labrus_bergylta
ENSORLG00015008051	-	99	75.202	ENSLACG00000010804	zgc:110045	78	75.202	Latimeria_chalumnae
ENSORLG00015008051	-	99	81.351	ENSLACG00000010386	pcbp3	78	81.351	Latimeria_chalumnae
ENSORLG00015008051	-	93	83.486	ENSLOCG00000005058	zgc:110045	80	83.486	Lepisosteus_oculatus
ENSORLG00015008051	-	95	90.390	ENSLOCG00000009369	pcbp3	98	90.390	Lepisosteus_oculatus
ENSORLG00015008051	-	98	93.750	ENSMAMG00000011620	-	99	93.750	Mastacembelus_armatus
ENSORLG00015008051	-	95	94.194	ENSMAMG00000022336	pcbp3	93	94.194	Mastacembelus_armatus
ENSORLG00015008051	-	99	88.427	ENSMZEG00005014882	-	99	89.021	Maylandia_zebra
ENSORLG00015008051	-	99	87.679	ENSMZEG00005008993	pcbp3	99	87.679	Maylandia_zebra
ENSORLG00015008051	-	98	75.815	ENSMGAG00000006794	-	77	75.815	Meleagris_gallopavo
ENSORLG00015008051	-	93	80.980	ENSMGAG00000001883	-	96	81.268	Meleagris_gallopavo
ENSORLG00015008051	-	98	94.375	ENSMMOG00000005216	-	99	94.375	Mola_mola
ENSORLG00015008051	-	95	93.269	ENSMMOG00000000730	pcbp3	88	93.269	Mola_mola
ENSORLG00015008051	-	69	77.570	ENSMODG00000027884	-	93	77.570	Monodelphis_domestica
ENSORLG00015008051	-	99	87.429	ENSMALG00000000691	pcbp3	99	87.429	Monopterus_albus
ENSORLG00015008051	-	97	83.136	ENSMPUG00000001779	-	91	83.136	Mustela_putorius_furo
ENSORLG00015008051	-	99	89.021	ENSNBRG00000016714	-	99	89.021	Neolamprologus_brichardi
ENSORLG00015008051	-	99	87.679	ENSNBRG00000016409	-	99	87.679	Neolamprologus_brichardi
ENSORLG00015008051	-	94	82.235	ENSOPRG00000003431	-	99	82.235	Ochotona_princeps
ENSORLG00015008051	-	95	84.703	ENSONIG00000012122	-	98	84.703	Oreochromis_niloticus
ENSORLG00015008051	-	98	96.875	ENSONIG00000004611	-	99	96.875	Oreochromis_niloticus
ENSORLG00015008051	-	95	95.177	ENSOCUG00000002696	-	89	95.177	Oryctolagus_cuniculus
ENSORLG00015008051	-	95	97.097	ENSORLG00000000059	pcbp3	100	97.097	Oryzias_latipes
ENSORLG00015008051	-	100	100.000	ENSORLG00000022739	-	100	100.000	Oryzias_latipes
ENSORLG00015008051	-	100	99.694	ENSORLG00020006124	-	100	99.694	Oryzias_latipes_hni
ENSORLG00015008051	-	95	97.097	ENSORLG00020012671	pcbp3	97	97.097	Oryzias_latipes_hni
ENSORLG00015008051	-	90	96.085	ENSOMEG00000020811	pcbp3	97	96.085	Oryzias_melastigma
ENSORLG00015008051	-	98	97.500	ENSOMEG00000020162	-	99	97.500	Oryzias_melastigma
ENSORLG00015008051	-	95	82.633	ENSOGAG00000008044	-	98	82.633	Otolemur_garnettii
ENSORLG00015008051	-	99	96.933	ENSPKIG00000019329	pcbp3	99	96.933	Paramormyrops_kingsleyae
ENSORLG00015008051	-	76	84.211	ENSPKIG00000020913	-	82	84.211	Paramormyrops_kingsleyae
ENSORLG00015008051	-	95	82.317	ENSPSIG00000014970	-	98	82.927	Pelodiscus_sinensis
ENSORLG00015008051	-	94	77.863	ENSPSIG00000008350	-	72	77.863	Pelodiscus_sinensis
ENSORLG00015008051	-	99	89.685	ENSPMGG00000022383	pcbp3	99	89.685	Periophthalmus_magnuspinnatus
ENSORLG00015008051	-	93	75.081	ENSPMAG00000004551	pcbp3	88	75.081	Petromyzon_marinus
ENSORLG00015008051	-	90	88.830	ENSPMAG00000004637	-	97	88.830	Petromyzon_marinus
ENSORLG00015008051	-	95	89.222	ENSPCIG00000028092	-	96	91.705	Phascolarctos_cinereus
ENSORLG00015008051	-	99	75.439	ENSPLAG00000011449	pcbp3	99	75.439	Poecilia_latipinna
ENSORLG00015008051	-	96	91.131	ENSPLAG00000004074	-	91	91.131	Poecilia_latipinna
ENSORLG00015008051	-	99	89.086	ENSPMEG00000006653	-	99	89.086	Poecilia_mexicana
ENSORLG00015008051	-	99	88.952	ENSPMEG00000021239	pcbp3	99	88.952	Poecilia_mexicana
ENSORLG00015008051	-	98	94.375	ENSPREG00000020585	-	99	94.375	Poecilia_reticulata
ENSORLG00015008051	-	95	92.308	ENSPREG00000015736	pcbp3	99	92.308	Poecilia_reticulata
ENSORLG00015008051	-	98	94.375	ENSPNYG00000013205	-	99	94.375	Pundamilia_nyererei
ENSORLG00015008051	-	95	94.194	ENSPNYG00000012326	pcbp3	95	94.194	Pundamilia_nyererei
ENSORLG00015008051	-	99	88.286	ENSPNAG00000008541	-	98	92.857	Pygocentrus_nattereri
ENSORLG00015008051	-	98	96.562	ENSPNAG00000015104	pcbp3	99	96.562	Pygocentrus_nattereri
ENSORLG00015008051	-	95	95.820	ENSRNOG00000001245	Pcbp3	97	95.820	Rattus_norvegicus
ENSORLG00015008051	-	95	84.000	ENSRBIG00000028177	-	90	84.000	Rhinopithecus_bieti
ENSORLG00015008051	-	95	89.728	ENSSHAG00000007890	-	98	89.728	Sarcophilus_harrisii
ENSORLG00015008051	-	99	97.546	ENSSFOG00015010205	pcbp3	99	97.546	Scleropages_formosus
ENSORLG00015008051	-	99	89.112	ENSSFOG00015014706	pcbp3	99	89.112	Scleropages_formosus
ENSORLG00015008051	-	92	85.430	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSORLG00015008051	-	95	94.516	ENSSMAG00000011929	pcbp3	97	94.516	Scophthalmus_maximus
ENSORLG00015008051	-	99	97.853	ENSSMAG00000003135	-	99	97.853	Scophthalmus_maximus
ENSORLG00015008051	-	95	87.164	ENSSDUG00000011608	pcbp3	99	87.164	Seriola_dumerili
ENSORLG00015008051	-	99	92.401	ENSSDUG00000008502	-	99	92.401	Seriola_dumerili
ENSORLG00015008051	-	95	87.164	ENSSLDG00000008518	pcbp3	99	87.164	Seriola_lalandi_dorsalis
ENSORLG00015008051	-	99	98.773	ENSSLDG00000020161	-	99	98.773	Seriola_lalandi_dorsalis
ENSORLG00015008051	-	98	74.451	ENSSPUG00000013214	-	90	84.080	Sphenodon_punctatus
ENSORLG00015008051	-	99	77.364	ENSSPAG00000023341	-	99	77.364	Stegastes_partitus
ENSORLG00015008051	-	93	93.151	ENSSPAG00000004190	-	99	93.151	Stegastes_partitus
ENSORLG00015008051	-	95	89.068	ENSTGUG00000008158	-	98	89.068	Taeniopygia_guttata
ENSORLG00015008051	-	95	86.707	ENSTGUG00000003316	-	98	86.707	Taeniopygia_guttata
ENSORLG00015008051	-	99	91.150	ENSTRUG00000013604	pcbp3	99	91.150	Takifugu_rubripes
ENSORLG00015008051	-	93	97.213	ENSTRUG00000006280	-	91	97.213	Takifugu_rubripes
ENSORLG00015008051	-	95	83.051	ENSTTRG00000015075	-	98	83.051	Tursiops_truncatus
ENSORLG00015008051	-	95	88.218	ENSXETG00000011483	pcbp1	98	88.218	Xenopus_tropicalis
ENSORLG00015008051	-	94	74.576	ENSXETG00000010491	pcbp2	78	74.576	Xenopus_tropicalis
ENSORLG00015008051	-	99	88.952	ENSXCOG00000020481	pcbp3	99	88.952	Xiphophorus_couchianus
ENSORLG00015008051	-	99	89.744	ENSXMAG00000008175	pcbp3	99	89.744	Xiphophorus_maculatus
ENSORLG00015008051	-	99	98.773	ENSXMAG00000028711	-	99	98.773	Xiphophorus_maculatus