EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015008552 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 63369 bases
Position: chr15:22552885-22616253
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015007742	zf-met	PF12874.7	2.2e-27	1	4
ENSORLP00015007742	zf-met	PF12874.7	2.2e-27	2	4
ENSORLP00015007742	zf-met	PF12874.7	2.2e-27	3	4
ENSORLP00015007742	zf-met	PF12874.7	2.2e-27	4	4
ENSORLP00015007735	zf-met	PF12874.7	8.7e-15	1	2
ENSORLP00015007735	zf-met	PF12874.7	8.7e-15	2	2
ENSORLP00015007742	zf-C2H2_jaz	PF12171.8	1e-20	1	2
ENSORLP00015007742	zf-C2H2_jaz	PF12171.8	1e-20	2	2
ENSORLP00015007735	zf-C2H2_jaz	PF12171.8	2.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015002021	-	4870	-	ENSORLP00015007735	142 (aa)	-	-
ENSORLT00015002001	-	684	-	ENSORLP00015007742	227 (aa)	-	-

Gene Model

Click here to download ENSORLG00015008552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015008552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015008552	zgc:171482	99	63.877	ENSORLG00015009006	zmat4a	96	63.877
ENSORLG00015008552	zgc:171482	96	40.000	ENSORLG00015018451	znf346	55	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015008552	zgc:171482	100	88.106	ENSAPOG00000019970	zgc:171482	100	88.106	Acanthochromis_polyacanthus
ENSORLG00015008552	zgc:171482	82	99.145	ENSACIG00000021512	zgc:171482	87	99.145	Amphilophus_citrinellus
ENSORLG00015008552	zgc:171482	87	95.968	ENSAOCG00000000751	zgc:171482	85	99.130	Amphiprion_ocellaris
ENSORLG00015008552	zgc:171482	96	91.912	ENSAPEG00000014154	zgc:171482	98	91.912	Amphiprion_percula
ENSORLG00015008552	zgc:171482	100	86.784	ENSATEG00000001371	zgc:171482	100	86.784	Anabas_testudineus
ENSORLG00015008552	zgc:171482	95	92.593	ENSACLG00000010511	zgc:171482	94	92.593	Astatotilapia_calliptera
ENSORLG00015008552	zgc:171482	100	84.141	ENSAMXG00000002299	zgc:171482	100	84.141	Astyanax_mexicanus
ENSORLG00015008552	zgc:171482	97	84.058	ENSCSEG00000006509	zgc:171482	90	84.058	Cynoglossus_semilaevis
ENSORLG00015008552	zgc:171482	100	89.427	ENSCVAG00000013606	zgc:171482	100	89.427	Cyprinodon_variegatus
ENSORLG00015008552	zgc:171482	99	82.456	ENSDARG00000074415	zgc:171482	99	93.333	Danio_rerio
ENSORLG00015008552	zgc:171482	95	87.407	ENSELUG00000021817	zgc:171482	97	87.407	Esox_lucius
ENSORLG00015008552	zgc:171482	80	73.684	ENSELUG00000017517	-	60	85.393	Esox_lucius
ENSORLG00015008552	zgc:171482	92	95.385	ENSFHEG00000002233	zgc:171482	95	98.291	Fundulus_heteroclitus
ENSORLG00015008552	zgc:171482	100	85.903	ENSGMOG00000010508	zgc:171482	100	85.903	Gadus_morhua
ENSORLG00015008552	zgc:171482	100	99.145	ENSGAFG00000009398	zgc:171482	75	100.000	Gambusia_affinis
ENSORLG00015008552	zgc:171482	100	89.224	ENSGACG00000007680	zgc:171482	100	89.224	Gasterosteus_aculeatus
ENSORLG00015008552	zgc:171482	93	95.455	ENSHBUG00000023289	zgc:171482	99	95.455	Haplochromis_burtoni
ENSORLG00015008552	zgc:171482	87	89.683	ENSHCOG00000018086	zgc:171482	86	93.913	Hippocampus_comes
ENSORLG00015008552	zgc:171482	92	84.733	ENSIPUG00000000361	zgc:171482	85	94.017	Ictalurus_punctatus
ENSORLG00015008552	zgc:171482	100	85.022	ENSKMAG00000005077	zgc:171482	86	85.022	Kryptolebias_marmoratus
ENSORLG00015008552	zgc:171482	86	99.130	ENSLBEG00000023823	zgc:171482	90	99.130	Labrus_bergylta
ENSORLG00015008552	zgc:171482	100	81.498	ENSLOCG00000008863	zgc:171482	97	81.498	Lepisosteus_oculatus
ENSORLG00015008552	zgc:171482	99	87.943	ENSMAMG00000001031	zgc:171482	94	97.436	Mastacembelus_armatus
ENSORLG00015008552	zgc:171482	100	87.391	ENSMZEG00005027721	zgc:171482	100	87.391	Maylandia_zebra
ENSORLG00015008552	zgc:171482	89	96.063	ENSMMOG00000010523	zgc:171482	97	98.291	Mola_mola
ENSORLG00015008552	zgc:171482	100	89.520	ENSMALG00000017883	zgc:171482	100	89.520	Monopterus_albus
ENSORLG00015008552	zgc:171482	80	100.000	ENSNBRG00000021035	zgc:171482	96	90.625	Neolamprologus_brichardi
ENSORLG00015008552	zgc:171482	99	90.265	ENSONIG00000018365	zgc:171482	98	90.265	Oreochromis_niloticus
ENSORLG00015008552	zgc:171482	100	100.000	ENSORLG00000007607	zgc:171482	100	100.000	Oryzias_latipes
ENSORLG00015008552	zgc:171482	100	98.592	ENSORLG00020003563	zgc:171482	100	98.592	Oryzias_latipes_hni
ENSORLG00015008552	zgc:171482	99	95.035	ENSOMEG00000003526	zgc:171482	99	95.035	Oryzias_melastigma
ENSORLG00015008552	zgc:171482	86	95.652	ENSPKIG00000015911	-	84	95.652	Paramormyrops_kingsleyae
ENSORLG00015008552	zgc:171482	80	90.909	ENSPKIG00000016244	zgc:171482	83	87.931	Paramormyrops_kingsleyae
ENSORLG00015008552	zgc:171482	99	84.519	ENSPMGG00000020230	zgc:171482	100	84.519	Periophthalmus_magnuspinnatus
ENSORLG00015008552	zgc:171482	99	86.192	ENSPFOG00000001974	zgc:171482	96	86.192	Poecilia_formosa
ENSORLG00015008552	zgc:171482	100	90.749	ENSPLAG00000003327	zgc:171482	100	90.749	Poecilia_latipinna
ENSORLG00015008552	zgc:171482	99	100.000	ENSPMEG00000004988	zgc:171482	100	85.526	Poecilia_mexicana
ENSORLG00015008552	zgc:171482	86	100.000	ENSPREG00000019241	zgc:171482	91	100.000	Poecilia_reticulata
ENSORLG00015008552	zgc:171482	95	92.593	ENSPNYG00000007773	zgc:171482	94	92.593	Pundamilia_nyererei
ENSORLG00015008552	zgc:171482	99	84.348	ENSPNAG00000007619	zgc:171482	97	84.348	Pygocentrus_nattereri
ENSORLG00015008552	zgc:171482	89	84.127	ENSSFOG00015016149	zgc:171482	97	86.777	Scleropages_formosus
ENSORLG00015008552	zgc:171482	88	90.435	ENSSFOG00015021238	zgc:171482	78	90.435	Scleropages_formosus
ENSORLG00015008552	zgc:171482	91	96.899	ENSSMAG00000002715	zgc:171482	83	96.899	Scophthalmus_maximus
ENSORLG00015008552	zgc:171482	95	91.111	ENSSDUG00000008773	zgc:171482	91	91.473	Seriola_dumerili
ENSORLG00015008552	zgc:171482	97	89.130	ENSSLDG00000019510	zgc:171482	91	91.473	Seriola_lalandi_dorsalis
ENSORLG00015008552	zgc:171482	87	97.581	ENSSPAG00000013724	zgc:171482	98	97.581	Stegastes_partitus
ENSORLG00015008552	zgc:171482	85	96.552	ENSTRUG00000005705	zgc:171482	71	96.552	Takifugu_rubripes
ENSORLG00015008552	zgc:171482	100	78.414	ENSTNIG00000008679	zgc:171482	100	78.414	Tetraodon_nigroviridis
ENSORLG00015008552	zgc:171482	75	83.333	ENSXETG00000013525	zmat4	76	91.111	Xenopus_tropicalis
ENSORLG00015008552	zgc:171482	100	88.136	ENSXMAG00000002641	zgc:171482	100	64.740	Xiphophorus_maculatus