EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015009001 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: -
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 15877 bases
Position: chr16:21215916-21231792
Accession: 101158795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015027081	Val_tRNA-synt_C	PF10458.9	1.2e-05	1	1
ENSORLP00015027081	tRNA-synt_1g	PF09334.11	5.2e-12	1	1
ENSORLP00015027081	Anticodon_1	PF08264.13	1.7e-34	1	1
ENSORLP00015027081	tRNA-synt_1	PF00133.22	4e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015001238	-	3935	XM_004078001	ENSORLP00015027081	1277 (aa)	XP_004078049	-

Gene Model

Click here to download ENSORLG00015009001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009001's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015009001	vars	79	50.146	ENSORLG00015010408	vars2	92	50.396

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009001	vars	100	64.815	ENSG00000204394	VARS	99	73.313	Homo_sapiens
ENSORLG00015009001	vars	94	89.710	ENSAPOG00000020691	vars	96	89.461	Acanthochromis_polyacanthus
ENSORLG00015009001	vars	94	89.710	ENSAPOG00000020921	vars	96	89.461	Acanthochromis_polyacanthus
ENSORLG00015009001	vars	100	65.275	ENSAMEG00000006417	VARS	100	65.275	Ailuropoda_melanoleuca
ENSORLG00015009001	vars	100	88.906	ENSACIG00000013752	vars	100	88.672	Amphilophus_citrinellus
ENSORLG00015009001	vars	100	89.898	ENSAOCG00000002447	vars	99	89.820	Amphiprion_ocellaris
ENSORLG00015009001	vars	100	89.742	ENSAPEG00000010638	vars	99	89.663	Amphiprion_percula
ENSORLG00015009001	vars	100	85.000	ENSATEG00000020219	vars	100	84.297	Anabas_testudineus
ENSORLG00015009001	vars	90	71.639	ENSACAG00000029133	-	99	71.441	Anolis_carolinensis
ENSORLG00015009001	vars	100	64.738	ENSANAG00000015453	VARS	100	64.815	Aotus_nancymaae
ENSORLG00015009001	vars	100	90.297	ENSACLG00000025699	vars	97	90.297	Astatotilapia_calliptera
ENSORLG00015009001	vars	96	79.625	ENSAMXG00000017716	vars	96	79.690	Astyanax_mexicanus
ENSORLG00015009001	vars	100	65.400	ENSBTAG00000005631	VARS	100	65.400	Bos_taurus
ENSORLG00015009001	vars	100	64.660	ENSCJAG00000002604	VARS	100	64.660	Callithrix_jacchus
ENSORLG00015009001	vars	100	65.093	ENSCAFG00000000636	VARS	100	65.150	Canis_familiaris
ENSORLG00015009001	vars	94	66.172	ENSCAFG00020020790	VARS	96	66.172	Canis_lupus_dingo
ENSORLG00015009001	vars	100	65.244	ENSCHIG00000011008	VARS	100	65.244	Capra_hircus
ENSORLG00015009001	vars	100	64.715	ENSTSYG00000001567	VARS	100	64.660	Carlito_syrichta
ENSORLG00015009001	vars	91	68.847	ENSCAPG00000013736	VARS	98	68.621	Cavia_aperea
ENSORLG00015009001	vars	100	64.838	ENSCPOG00000000870	VARS	100	64.628	Cavia_porcellus
ENSORLG00015009001	vars	100	64.892	ENSCCAG00000035656	VARS	100	64.738	Cebus_capucinus
ENSORLG00015009001	vars	100	65.100	ENSCATG00000022394	VARS	100	65.123	Cercocebus_atys
ENSORLG00015009001	vars	93	64.788	ENSCLAG00000009470	VARS	97	64.566	Chinchilla_lanigera
ENSORLG00015009001	vars	100	64.869	ENSCSAG00000008784	VARS	100	64.892	Chlorocebus_sabaeus
ENSORLG00015009001	vars	77	74.873	ENSCPBG00000007943	VARS	96	74.873	Chrysemys_picta_bellii
ENSORLG00015009001	vars	100	65.023	ENSCANG00000033570	VARS	100	65.046	Colobus_angolensis_palliatus
ENSORLG00015009001	vars	100	65.322	ENSCGRG00001005686	Vars	100	65.400	Cricetulus_griseus_chok1gshd
ENSORLG00015009001	vars	93	63.495	ENSCGRG00000013352	Vars	78	63.577	Cricetulus_griseus_crigri
ENSORLG00015009001	vars	100	81.939	ENSCSEG00000019652	vars	100	81.392	Cynoglossus_semilaevis
ENSORLG00015009001	vars	100	90.063	ENSCVAG00000022398	vars	100	90.063	Cyprinodon_variegatus
ENSORLG00015009001	vars	100	83.555	ENSDARG00000044575	vars	100	83.554	Danio_rerio
ENSORLG00015009001	vars	82	71.866	ENSDORG00000016433	Vars	93	71.962	Dipodomys_ordii
ENSORLG00015009001	vars	68	75.226	ENSETEG00000003824	VARS	76	75.226	Echinops_telfairi
ENSORLG00015009001	vars	52	73.356	ENSEBUG00000007086	vars	83	73.356	Eptatretus_burgeri
ENSORLG00015009001	vars	57	65.937	ENSEBUG00000004637	vars	100	65.937	Eptatretus_burgeri
ENSORLG00015009001	vars	100	65.402	ENSEASG00005015673	VARS	100	65.402	Equus_asinus_asinus
ENSORLG00015009001	vars	100	65.352	ENSECAG00000014620	VARS	100	65.584	Equus_caballus
ENSORLG00015009001	vars	72	71.679	ENSEEUG00000004116	VARS	73	71.679	Erinaceus_europaeus
ENSORLG00015009001	vars	100	83.645	ENSELUG00000006550	vars	97	83.580	Esox_lucius
ENSORLG00015009001	vars	100	65.402	ENSFCAG00000004510	VARS	100	65.557	Felis_catus
ENSORLG00015009001	vars	88	71.100	ENSFDAG00000011401	VARS	100	71.013	Fukomys_damarensis
ENSORLG00015009001	vars	100	88.811	ENSFHEG00000010672	vars	100	88.811	Fundulus_heteroclitus
ENSORLG00015009001	vars	100	81.138	ENSGMOG00000014908	vars	100	81.528	Gadus_morhua
ENSORLG00015009001	vars	100	89.671	ENSGAFG00000021630	vars	100	89.671	Gambusia_affinis
ENSORLG00015009001	vars	93	87.909	ENSGACG00000009601	vars	100	84.260	Gasterosteus_aculeatus
ENSORLG00015009001	vars	50	61.051	ENSGAGG00000006508	-	91	60.742	Gopherus_agassizii
ENSORLG00015009001	vars	100	65.046	ENSGGOG00000011364	VARS	100	64.969	Gorilla_gorilla
ENSORLG00015009001	vars	100	90.297	ENSHBUG00000017151	vars	97	90.297	Haplochromis_burtoni
ENSORLG00015009001	vars	100	64.988	ENSHGLG00000011646	VARS	100	64.833	Heterocephalus_glaber_female
ENSORLG00015009001	vars	94	61.619	ENSHGLG00100018062	VARS	99	61.345	Heterocephalus_glaber_male
ENSORLG00015009001	vars	99	84.038	ENSHCOG00000012198	vars	99	83.777	Hippocampus_comes
ENSORLG00015009001	vars	100	83.034	ENSIPUG00000005218	vars	100	83.112	Ictalurus_punctatus
ENSORLG00015009001	vars	100	65.325	ENSSTOG00000013112	VARS	100	65.248	Ictidomys_tridecemlineatus
ENSORLG00015009001	vars	100	53.432	ENSJJAG00000015343	-	100	53.167	Jaculus_jaculus
ENSORLG00015009001	vars	100	65.097	ENSJJAG00000019749	-	100	64.802	Jaculus_jaculus
ENSORLG00015009001	vars	100	85.826	ENSKMAG00000009455	vars	100	85.826	Kryptolebias_marmoratus
ENSORLG00015009001	vars	100	85.660	ENSLBEG00000010341	vars	99	85.660	Labrus_bergylta
ENSORLG00015009001	vars	94	66.994	ENSLACG00000015232	VARS	99	66.694	Latimeria_chalumnae
ENSORLG00015009001	vars	100	75.430	ENSLOCG00000004240	vars	100	74.961	Lepisosteus_oculatus
ENSORLG00015009001	vars	100	64.833	ENSLAFG00000023090	VARS	100	64.756	Loxodonta_africana
ENSORLG00015009001	vars	100	64.946	ENSMFAG00000001032	VARS	100	64.969	Macaca_fascicularis
ENSORLG00015009001	vars	100	64.946	ENSMMUG00000006828	VARS	100	64.969	Macaca_mulatta
ENSORLG00015009001	vars	100	64.946	ENSMNEG00000042072	VARS	100	64.969	Macaca_nemestrina
ENSORLG00015009001	vars	100	65.023	ENSMLEG00000039307	VARS	100	65.046	Mandrillus_leucophaeus
ENSORLG00015009001	vars	100	88.097	ENSMAMG00000003949	vars	100	88.254	Mastacembelus_armatus
ENSORLG00015009001	vars	100	90.376	ENSMZEG00005018327	vars	97	90.376	Maylandia_zebra
ENSORLG00015009001	vars	100	65.244	ENSMAUG00000006715	Vars	100	65.322	Mesocricetus_auratus
ENSORLG00015009001	vars	100	64.665	ENSMICG00000003548	VARS	100	64.738	Microcebus_murinus
ENSORLG00015009001	vars	100	64.519	ENSMOCG00000015404	Vars	100	64.574	Microtus_ochrogaster
ENSORLG00015009001	vars	100	85.513	ENSMMOG00000015801	vars	100	85.356	Mola_mola
ENSORLG00015009001	vars	100	65.402	ENSMODG00000015204	-	100	65.248	Monodelphis_domestica
ENSORLG00015009001	vars	99	88.009	ENSMALG00000022532	vars	99	88.009	Monopterus_albus
ENSORLG00015009001	vars	100	65.994	MGP_CAROLIEiJ_G0021491	Vars	100	65.994	Mus_caroli
ENSORLG00015009001	vars	100	65.839	ENSMUSG00000007029	Vars	100	65.839	Mus_musculus
ENSORLG00015009001	vars	100	65.761	MGP_PahariEiJ_G0020486	Vars	100	65.761	Mus_pahari
ENSORLG00015009001	vars	100	65.916	MGP_SPRETEiJ_G0022396	Vars	100	65.916	Mus_spretus
ENSORLG00015009001	vars	100	65.244	ENSMPUG00000010821	VARS	100	65.244	Mustela_putorius_furo
ENSORLG00015009001	vars	78	68.024	ENSMLUG00000013126	VARS	100	68.024	Myotis_lucifugus
ENSORLG00015009001	vars	100	65.194	ENSNGAG00000012151	Vars	100	65.194	Nannospalax_galili
ENSORLG00015009001	vars	100	89.906	ENSNBRG00000020520	vars	100	89.906	Neolamprologus_brichardi
ENSORLG00015009001	vars	100	64.738	ENSNLEG00000006351	VARS	100	64.738	Nomascus_leucogenys
ENSORLG00015009001	vars	94	73.146	ENSMEUG00000011378	VARS	100	63.749	Notamacropus_eugenii
ENSORLG00015009001	vars	100	65.070	ENSOPRG00000003607	VARS	100	65.170	Ochotona_princeps
ENSORLG00015009001	vars	100	64.601	ENSODEG00000017681	VARS	100	64.601	Octodon_degus
ENSORLG00015009001	vars	100	89.408	ENSONIG00000013064	vars	100	91.739	Oreochromis_niloticus
ENSORLG00015009001	vars	77	68.075	ENSOANG00000005400	VARS	98	67.840	Ornithorhynchus_anatinus
ENSORLG00015009001	vars	100	64.059	ENSOCUG00000022463	VARS	100	63.867	Oryctolagus_cuniculus
ENSORLG00015009001	vars	100	98.910	ENSORLG00000013063	vars	100	98.910	Oryzias_latipes
ENSORLG00015009001	vars	100	99.452	ENSORLG00020003504	vars	100	99.452	Oryzias_latipes_hni
ENSORLG00015009001	vars	100	97.024	ENSOMEG00000015016	vars	100	97.024	Oryzias_melastigma
ENSORLG00015009001	vars	100	64.815	ENSOGAG00000007515	VARS	100	64.815	Otolemur_garnettii
ENSORLG00015009001	vars	100	64.815	ENSPPAG00000034012	VARS	100	64.815	Pan_paniscus
ENSORLG00015009001	vars	100	65.402	ENSPPRG00000014855	VARS	100	65.557	Panthera_pardus
ENSORLG00015009001	vars	85	69.526	ENSPTIG00000010462	VARS	94	69.252	Panthera_tigris_altaica
ENSORLG00015009001	vars	100	64.892	ENSPTRG00000017985	VARS	100	64.892	Pan_troglodytes
ENSORLG00015009001	vars	100	63.671	ENSPANG00000014565	VARS	100	63.692	Papio_anubis
ENSORLG00015009001	vars	100	81.464	ENSPKIG00000016304	vars	100	81.308	Paramormyrops_kingsleyae
ENSORLG00015009001	vars	100	83.164	ENSPMGG00000023909	vars	100	83.099	Periophthalmus_magnuspinnatus
ENSORLG00015009001	vars	100	65.167	ENSPEMG00000006639	Vars	100	65.322	Peromyscus_maniculatus_bairdii
ENSORLG00015009001	vars	100	65.322	ENSPCIG00000018553	VARS	100	65.167	Phascolarctos_cinereus
ENSORLG00015009001	vars	100	89.906	ENSPFOG00000015690	vars	100	89.906	Poecilia_formosa
ENSORLG00015009001	vars	100	89.828	ENSPLAG00000009590	vars	100	89.828	Poecilia_latipinna
ENSORLG00015009001	vars	100	89.828	ENSPMEG00000004708	vars	100	89.828	Poecilia_mexicana
ENSORLG00015009001	vars	100	84.194	ENSPREG00000013264	vars	99	92.505	Poecilia_reticulata
ENSORLG00015009001	vars	100	63.223	ENSPPYG00000016460	VARS	100	63.580	Pongo_abelii
ENSORLG00015009001	vars	86	66.963	ENSPCAG00000013565	VARS	86	66.963	Procavia_capensis
ENSORLG00015009001	vars	100	64.611	ENSPCOG00000010942	VARS	100	64.842	Propithecus_coquereli
ENSORLG00015009001	vars	100	62.674	ENSPVAG00000012403	VARS	100	62.926	Pteropus_vampyrus
ENSORLG00015009001	vars	100	90.376	ENSPNYG00000022511	vars	100	90.376	Pundamilia_nyererei
ENSORLG00015009001	vars	100	83.372	ENSPNAG00000020962	vars	100	83.607	Pygocentrus_nattereri
ENSORLG00015009001	vars	100	65.710	ENSRNOG00000000867	Vars	100	65.555	Rattus_norvegicus
ENSORLG00015009001	vars	100	64.946	ENSRBIG00000041669	VARS	100	64.969	Rhinopithecus_bieti
ENSORLG00015009001	vars	100	64.946	ENSRROG00000045490	VARS	100	64.969	Rhinopithecus_roxellana
ENSORLG00015009001	vars	100	64.198	ENSSBOG00000035402	VARS	100	64.198	Saimiri_boliviensis_boliviensis
ENSORLG00015009001	vars	100	64.563	ENSSHAG00000006937	VARS	100	64.769	Sarcophilus_harrisii
ENSORLG00015009001	vars	100	80.482	ENSSFOG00015014272	vars	98	85.569	Scleropages_formosus
ENSORLG00015009001	vars	100	87.549	ENSSMAG00000009596	vars	99	87.549	Scophthalmus_maximus
ENSORLG00015009001	vars	100	90.603	ENSSDUG00000014177	vars	100	90.603	Seriola_dumerili
ENSORLG00015009001	vars	100	90.211	ENSSLDG00000025316	vars	100	90.211	Seriola_lalandi_dorsalis
ENSORLG00015009001	vars	100	89.898	ENSSPAG00000017068	vars	100	89.898	Stegastes_partitus
ENSORLG00015009001	vars	100	64.733	ENSSSCG00000038950	VARS	100	64.811	Sus_scrofa
ENSORLG00015009001	vars	81	81.757	ENSTRUG00000012307	vars	97	81.731	Takifugu_rubripes
ENSORLG00015009001	vars	100	85.848	ENSTNIG00000008011	vars	100	85.770	Tetraodon_nigroviridis
ENSORLG00015009001	vars	100	59.644	ENSTTRG00000014128	VARS	100	59.644	Tursiops_truncatus
ENSORLG00015009001	vars	100	63.904	ENSUAMG00000010424	VARS	100	63.981	Ursus_americanus
ENSORLG00015009001	vars	100	60.202	ENSUMAG00000013486	VARS	98	64.195	Ursus_maritimus
ENSORLG00015009001	vars	100	65.456	ENSVVUG00000021323	VARS	100	65.197	Vulpes_vulpes
ENSORLG00015009001	vars	100	64.479	ENSXETG00000024076	vars	100	63.895	Xenopus_tropicalis
ENSORLG00015009001	vars	100	86.933	ENSXCOG00000019172	vars	100	87.011	Xiphophorus_couchianus
ENSORLG00015009001	vars	100	89.515	ENSXMAG00000010927	vars	100	89.515	Xiphophorus_maculatus