EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015009022 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 11719 bases
Position: chr11:9258438-9270156
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015008209	zf-C2H2	PF00096.26	3.5e-16	1	3
ENSORLP00015008209	zf-C2H2	PF00096.26	3.5e-16	2	3
ENSORLP00015008209	zf-C2H2	PF00096.26	3.5e-16	3	3
ENSORLP00015008209	zf-met	PF12874.7	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015001236	-	1854	-	ENSORLP00015008209	617 (aa)	-	-

Gene Model

Click here to download ENSORLG00015009022's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009022's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015009022	prdm1b	53	45.528	ENSORLG00015014823	-	97	45.528

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009022	prdm1b	67	71.564	ENSAPOG00000022084	prdm1b	92	72.512	Acanthochromis_polyacanthus
ENSORLG00015009022	prdm1b	92	69.898	ENSACIG00000014426	prdm1b	92	70.000	Amphilophus_citrinellus
ENSORLG00015009022	prdm1b	92	69.284	ENSAOCG00000002230	prdm1b	95	69.164	Amphiprion_ocellaris
ENSORLG00015009022	prdm1b	92	68.935	ENSAPEG00000019826	prdm1b	92	68.641	Amphiprion_percula
ENSORLG00015009022	prdm1b	65	59.420	ENSATEG00000021017	prdm1a	57	59.420	Anabas_testudineus
ENSORLG00015009022	prdm1b	92	69.192	ENSATEG00000006924	prdm1b	91	69.625	Anabas_testudineus
ENSORLG00015009022	prdm1b	92	71.695	ENSACLG00000005487	prdm1b	87	71.864	Astatotilapia_calliptera
ENSORLG00015009022	prdm1b	65	61.194	ENSCSEG00000009707	prdm1a	56	61.194	Cynoglossus_semilaevis
ENSORLG00015009022	prdm1b	92	67.126	ENSCVAG00000016746	prdm1b	90	67.470	Cyprinodon_variegatus
ENSORLG00015009022	prdm1b	52	59.420	ENSCVAG00000019081	prdm1a	56	59.420	Cyprinodon_variegatus
ENSORLG00015009022	prdm1b	92	70.052	ENSFHEG00000019848	prdm1b	91	70.396	Fundulus_heteroclitus
ENSORLG00015009022	prdm1b	92	69.283	ENSGAFG00000016191	prdm1b	91	69.270	Gambusia_affinis
ENSORLG00015009022	prdm1b	92	64.415	ENSGACG00000002716	prdm1b	85	64.368	Gasterosteus_aculeatus
ENSORLG00015009022	prdm1b	92	71.525	ENSHBUG00000001475	prdm1b	93	71.695	Haplochromis_burtoni
ENSORLG00015009022	prdm1b	92	67.007	ENSHCOG00000003617	prdm1b	91	66.837	Hippocampus_comes
ENSORLG00015009022	prdm1b	90	50.087	ENSIPUG00000013740	prdm1b	91	50.260	Ictalurus_punctatus
ENSORLG00015009022	prdm1b	89	38.193	ENSKMAG00000016247	-	74	38.035	Kryptolebias_marmoratus
ENSORLG00015009022	prdm1b	69	59.420	ENSKMAG00000017597	prdm1a	63	59.420	Kryptolebias_marmoratus
ENSORLG00015009022	prdm1b	92	68.403	ENSKMAG00000011218	prdm1b	90	67.586	Kryptolebias_marmoratus
ENSORLG00015009022	prdm1b	92	70.826	ENSLBEG00000020955	prdm1b	90	70.826	Labrus_bergylta
ENSORLG00015009022	prdm1b	95	51.468	ENSLOCG00000004978	prdm1b	65	69.863	Lepisosteus_oculatus
ENSORLG00015009022	prdm1b	92	70.169	ENSMZEG00005026361	prdm1b	86	70.339	Maylandia_zebra
ENSORLG00015009022	prdm1b	92	70.169	ENSMMOG00000013458	prdm1b	93	69.831	Mola_mola
ENSORLG00015009022	prdm1b	93	66.054	ENSMALG00000011410	prdm1b	93	66.610	Monopterus_albus
ENSORLG00015009022	prdm1b	91	64.490	ENSONIG00000013583	prdm1b	86	64.490	Oreochromis_niloticus
ENSORLG00015009022	prdm1b	92	97.711	ENSORLG00000010025	prdm1b	93	97.711	Oryzias_latipes
ENSORLG00015009022	prdm1b	70	73.529	ENSPKIG00000022335	prdm1b	65	73.529	Paramormyrops_kingsleyae
ENSORLG00015009022	prdm1b	87	63.781	ENSPFOG00000003103	prdm1b	84	63.556	Poecilia_formosa
ENSORLG00015009022	prdm1b	93	68.624	ENSPLAG00000018491	prdm1b	90	69.388	Poecilia_latipinna
ENSORLG00015009022	prdm1b	93	69.128	ENSPMEG00000007869	prdm1b	90	70.103	Poecilia_mexicana
ENSORLG00015009022	prdm1b	93	68.896	ENSPREG00000011327	prdm1b	90	70.238	Poecilia_reticulata
ENSORLG00015009022	prdm1b	91	38.450	ENSPVAG00000011732	PRDM1	80	39.110	Pteropus_vampyrus
ENSORLG00015009022	prdm1b	69	61.194	ENSPNAG00000028442	prdm1a	58	61.194	Pygocentrus_nattereri
ENSORLG00015009022	prdm1b	91	57.858	ENSSFOG00015021896	prdm1b	77	57.513	Scleropages_formosus
ENSORLG00015009022	prdm1b	92	68.697	ENSSMAG00000020467	prdm1b	91	69.110	Scophthalmus_maximus
ENSORLG00015009022	prdm1b	92	71.404	ENSSDUG00000020610	prdm1b	90	71.453	Seriola_dumerili
ENSORLG00015009022	prdm1b	92	71.235	ENSSLDG00000021973	prdm1b	92	70.869	Seriola_lalandi_dorsalis
ENSORLG00015009022	prdm1b	92	71.404	ENSSPAG00000000803	prdm1b	95	72.242	Stegastes_partitus
ENSORLG00015009022	prdm1b	92	70.326	ENSXCOG00000018920	prdm1b	80	69.610	Xiphophorus_couchianus
ENSORLG00015009022	prdm1b	94	67.828	ENSXMAG00000016765	prdm1b	94	67.828	Xiphophorus_maculatus