EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015009232 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 44042 bases
Position: chr1:9160001-9204042
Accession: 101157348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015008401	Ago_hook	PF10427.9	6.4e-07	1	1
ENSORLP00015027250	Ago_hook	PF10427.9	6.4e-07	1	1
ENSORLP00015008422	Ago_hook	PF10427.9	9.2e-07	1	1
ENSORLP00015008422	RRM_1	PF00076.22	0.00018	1	1
ENSORLP00015008401	RRM_1	PF00076.22	0.00019	1	1
ENSORLP00015027250	RRM_1	PF00076.22	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015000858	-	6555	XM_011473888	ENSORLP00015008422	1865 (aa)	XP_011472190	-
ENSORLT00015000900	-	5977	XM_020700409	ENSORLP00015008401	1904 (aa)	XP_020556068	-
ENSORLT00015000818	-	6672	-	ENSORLP00015027250	1904 (aa)	-	-

Gene Model

Click here to download ENSORLG00015009232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015009232	tnrc6c2	72	47.240	ENSORLG00015000171	tnrc6c1	52	58.743

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009232	tnrc6c2	99	81.944	ENSAOCG00000017648	tnrc6c2	100	81.919	Amphiprion_ocellaris
ENSORLG00015009232	tnrc6c2	83	81.568	ENSATEG00000003656	tnrc6c2	57	85.856	Anabas_testudineus
ENSORLG00015009232	tnrc6c2	98	81.103	ENSACLG00000006469	tnrc6c2	99	81.424	Astatotilapia_calliptera
ENSORLG00015009232	tnrc6c2	87	57.331	ENSAMXG00000009579	tnrc6c2	100	56.739	Astyanax_mexicanus
ENSORLG00015009232	tnrc6c2	91	56.567	ENSDARG00000103851	tnrc6c2	100	56.669	Danio_rerio
ENSORLG00015009232	tnrc6c2	87	60.815	ENSELUG00000007206	tnrc6c2	100	59.507	Esox_lucius
ENSORLG00015009232	tnrc6c2	83	54.146	ENSELUG00000008149	-	100	51.337	Esox_lucius
ENSORLG00015009232	tnrc6c2	92	80.485	ENSFHEG00000003901	tnrc6c2	100	82.303	Fundulus_heteroclitus
ENSORLG00015009232	tnrc6c2	98	70.339	ENSGACG00000019401	tnrc6c2	99	70.206	Gasterosteus_aculeatus
ENSORLG00015009232	tnrc6c2	98	81.327	ENSHBUG00000018310	tnrc6c2	99	81.594	Haplochromis_burtoni
ENSORLG00015009232	tnrc6c2	99	74.045	ENSHCOG00000017802	tnrc6c2	100	73.474	Hippocampus_comes
ENSORLG00015009232	tnrc6c2	87	53.502	ENSIPUG00000022767	tnrc6c2	100	52.372	Ictalurus_punctatus
ENSORLG00015009232	tnrc6c2	87	82.078	ENSMAMG00000001718	tnrc6c2	100	82.442	Mastacembelus_armatus
ENSORLG00015009232	tnrc6c2	98	81.156	ENSMZEG00005023905	tnrc6c2	99	81.478	Maylandia_zebra
ENSORLG00015009232	tnrc6c2	87	81.050	ENSMALG00000020932	tnrc6c2	100	81.110	Monopterus_albus
ENSORLG00015009232	tnrc6c2	83	86.142	ENSNBRG00000000452	tnrc6c2	57	86.475	Neolamprologus_brichardi
ENSORLG00015009232	tnrc6c2	85	79.109	ENSONIG00000018123	tnrc6c2	100	80.238	Oreochromis_niloticus
ENSORLG00015009232	tnrc6c2	100	98.900	ENSORLG00000003327	tnrc6c2	100	98.900	Oryzias_latipes
ENSORLG00015009232	tnrc6c2	100	98.900	ENSORLG00020010730	tnrc6c2	100	98.900	Oryzias_latipes_hni
ENSORLG00015009232	tnrc6c2	100	95.900	ENSOMEG00000017952	tnrc6c2	100	95.900	Oryzias_melastigma
ENSORLG00015009232	tnrc6c2	91	76.050	ENSPFOG00000011590	tnrc6c2	99	78.046	Poecilia_formosa
ENSORLG00015009232	tnrc6c2	87	76.716	ENSPLAG00000006992	tnrc6c2	100	78.209	Poecilia_latipinna
ENSORLG00015009232	tnrc6c2	99	80.642	ENSPMEG00000012946	tnrc6c2	100	80.647	Poecilia_mexicana
ENSORLG00015009232	tnrc6c2	87	77.603	ENSPREG00000015823	tnrc6c2	100	76.709	Poecilia_reticulata
ENSORLG00015009232	tnrc6c2	87	82.382	ENSPNYG00000002582	tnrc6c2	100	82.807	Pundamilia_nyererei
ENSORLG00015009232	tnrc6c2	87	56.852	ENSPNAG00000026838	tnrc6c2	100	57.711	Pygocentrus_nattereri
ENSORLG00015009232	tnrc6c2	87	80.012	ENSSMAG00000015145	tnrc6c2	100	80.436	Scophthalmus_maximus
ENSORLG00015009232	tnrc6c2	87	83.618	ENSSDUG00000020741	tnrc6c2	100	83.983	Seriola_dumerili
ENSORLG00015009232	tnrc6c2	87	83.618	ENSSLDG00000002077	tnrc6c2	100	83.983	Seriola_lalandi_dorsalis
ENSORLG00015009232	tnrc6c2	99	82.749	ENSSPAG00000013052	tnrc6c2	100	83.096	Stegastes_partitus
ENSORLG00015009232	tnrc6c2	84	81.051	ENSTNIG00000004178	tnrc6c2	94	82.256	Tetraodon_nigroviridis
ENSORLG00015009232	tnrc6c2	87	77.804	ENSXCOG00000013252	tnrc6c2	100	78.222	Xiphophorus_couchianus
ENSORLG00015009232	tnrc6c2	87	82.396	ENSXMAG00000006739	tnrc6c2	100	82.702	Xiphophorus_maculatus