EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015009342 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 10761 bases
Position: chr8:11523778-11534538
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015008544	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSORLP00015008536	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015000629	-	2052	-	ENSORLP00015008544	498 (aa)	-	-
ENSORLT00015000651	-	2016	-	ENSORLP00015008536	486 (aa)	-	-

Gene Model

Click here to download ENSORLG00015009342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015009342	srl	85	31.981	ENSORLG00015020872	ehd4	74	31.981
ENSORLG00015009342	srl	89	30.892	ENSORLG00015021510	-	75	30.892
ENSORLG00015009342	srl	81	30.597	ENSORLG00015017672	ehd1a	70	31.538
ENSORLG00015009342	srl	77	33.780	ENSORLG00015020550	ehd3	73	33.086
ENSORLG00015009342	srl	91	75.169	ENSORLG00015019063	SRL	97	75.169
ENSORLG00015009342	srl	85	33.254	ENSORLG00015005729	ehd2	74	33.254

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009342	srl	93	80.488	ENSG00000185739	SRL	99	82.326	Homo_sapiens
ENSORLG00015009342	srl	91	77.652	ENSAPOG00000012432	SRL	99	77.652	Acanthochromis_polyacanthus
ENSORLG00015009342	srl	97	96.178	ENSAPOG00000018093	srl	100	96.178	Acanthochromis_polyacanthus
ENSORLG00015009342	srl	94	79.694	ENSAMEG00000010862	SRL	50	81.674	Ailuropoda_melanoleuca
ENSORLG00015009342	srl	93	97.333	ENSACIG00000015799	srl	99	97.333	Amphilophus_citrinellus
ENSORLG00015009342	srl	92	75.730	ENSACIG00000015419	SRL	99	75.446	Amphilophus_citrinellus
ENSORLG00015009342	srl	89	97.235	ENSAOCG00000007574	srl	100	97.235	Amphiprion_ocellaris
ENSORLG00015009342	srl	94	75.870	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSORLG00015009342	srl	97	96.480	ENSAPEG00000006911	srl	100	96.480	Amphiprion_percula
ENSORLG00015009342	srl	94	72.113	ENSAPEG00000006533	SRL	96	75.225	Amphiprion_percula
ENSORLG00015009342	srl	92	75.705	ENSATEG00000009643	SRL	52	76.535	Anabas_testudineus
ENSORLG00015009342	srl	97	95.652	ENSATEG00000024315	srl	100	95.652	Anabas_testudineus
ENSORLG00015009342	srl	98	79.108	ENSACAG00000016380	SRL	90	79.878	Anolis_carolinensis
ENSORLG00015009342	srl	97	96.687	ENSACLG00000027685	srl	100	95.643	Astatotilapia_calliptera
ENSORLG00015009342	srl	91	75.000	ENSACLG00000024674	SRL	57	75.000	Astatotilapia_calliptera
ENSORLG00015009342	srl	100	89.095	ENSAMXG00000018789	srl	95	89.537	Astyanax_mexicanus
ENSORLG00015009342	srl	86	78.333	ENSAMXG00000038693	SRL	100	74.393	Astyanax_mexicanus
ENSORLG00015009342	srl	93	81.236	ENSBTAG00000001078	SRL	57	81.236	Bos_taurus
ENSORLG00015009342	srl	91	81.900	ENSCJAG00000019750	SRL	100	78.858	Callithrix_jacchus
ENSORLG00015009342	srl	94	79.521	ENSCAFG00000019233	SRL	85	80.044	Canis_familiaris
ENSORLG00015009342	srl	93	80.574	ENSCAFG00020025024	SRL	56	80.574	Canis_lupus_dingo
ENSORLG00015009342	srl	94	81.004	ENSCHIG00000017927	SRL	57	81.236	Capra_hircus
ENSORLG00015009342	srl	97	79.070	ENSTSYG00000007919	SRL	99	83.023	Carlito_syrichta
ENSORLG00015009342	srl	93	80.617	ENSCPOG00000012643	SRL	100	79.237	Cavia_porcellus
ENSORLG00015009342	srl	91	76.923	ENSCCAG00000032646	SRL	100	83.905	Cebus_capucinus
ENSORLG00015009342	srl	93	80.488	ENSCATG00000032227	-	100	78.858	Cercocebus_atys
ENSORLG00015009342	srl	93	80.837	ENSCLAG00000016242	SRL	100	79.449	Chinchilla_lanigera
ENSORLG00015009342	srl	79	85.455	ENSCHOG00000001618	SRL	52	85.455	Choloepus_hoffmanni
ENSORLG00015009342	srl	91	84.974	ENSCPBG00000026371	SRL	99	79.089	Chrysemys_picta_bellii
ENSORLG00015009342	srl	88	59.579	ENSCING00000005231	-	95	59.579	Ciona_intestinalis
ENSORLG00015009342	srl	93	80.488	ENSCANG00000035872	SRL	99	82.326	Colobus_angolensis_palliatus
ENSORLG00015009342	srl	94	80.568	ENSCGRG00001016630	Srl	100	80.085	Cricetulus_griseus_chok1gshd
ENSORLG00015009342	srl	94	80.568	ENSCGRG00000005458	Srl	100	80.085	Cricetulus_griseus_crigri
ENSORLG00015009342	srl	97	94.894	ENSCSEG00000016151	srl	100	94.894	Cynoglossus_semilaevis
ENSORLG00015009342	srl	95	72.805	ENSCSEG00000011866	SRL	94	71.849	Cynoglossus_semilaevis
ENSORLG00015009342	srl	97	94.398	ENSCVAG00000003513	srl	100	94.398	Cyprinodon_variegatus
ENSORLG00015009342	srl	94	75.000	ENSCVAG00000022465	SRL	61	75.922	Cyprinodon_variegatus
ENSORLG00015009342	srl	97	89.419	ENSDARG00000104587	srl	100	89.419	Danio_rerio
ENSORLG00015009342	srl	78	78.385	ENSDARG00000112959	CABZ01072309.1	100	78.385	Danio_rerio
ENSORLG00015009342	srl	93	80.931	ENSDNOG00000011643	SRL	54	80.617	Dasypus_novemcinctus
ENSORLG00015009342	srl	93	81.498	ENSDORG00000014807	Srl	100	79.873	Dipodomys_ordii
ENSORLG00015009342	srl	76	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSORLG00015009342	srl	93	81.111	ENSEASG00005000942	SRL	55	80.795	Equus_asinus_asinus
ENSORLG00015009342	srl	97	79.237	ENSECAG00000024219	SRL	99	79.237	Equus_caballus
ENSORLG00015009342	srl	97	86.242	ENSELUG00000015616	srl	100	86.242	Esox_lucius
ENSORLG00015009342	srl	97	78.224	ENSFCAG00000022075	SRL	100	78.224	Felis_catus
ENSORLG00015009342	srl	91	82.500	ENSFALG00000004328	SRL	63	82.500	Ficedula_albicollis
ENSORLG00015009342	srl	94	81.319	ENSFDAG00000006199	SRL	100	80.297	Fukomys_damarensis
ENSORLG00015009342	srl	97	73.760	ENSFHEG00000011854	SRL	99	77.252	Fundulus_heteroclitus
ENSORLG00015009342	srl	97	95.021	ENSFHEG00000011239	srl	100	95.021	Fundulus_heteroclitus
ENSORLG00015009342	srl	91	91.410	ENSGMOG00000014954	srl	100	91.410	Gadus_morhua
ENSORLG00015009342	srl	97	79.830	ENSGALG00000038884	SRL	99	79.830	Gallus_gallus
ENSORLG00015009342	srl	91	78.378	ENSGAFG00000016984	SRL	99	78.378	Gambusia_affinis
ENSORLG00015009342	srl	97	95.436	ENSGAFG00000000010	srl	100	95.436	Gambusia_affinis
ENSORLG00015009342	srl	91	95.385	ENSGACG00000011332	srl	100	95.385	Gasterosteus_aculeatus
ENSORLG00015009342	srl	93	80.488	ENSGGOG00000011312	-	100	78.647	Gorilla_gorilla
ENSORLG00015009342	srl	97	96.687	ENSHBUG00000007581	srl	100	95.643	Haplochromis_burtoni
ENSORLG00015009342	srl	93	74.359	ENSHBUG00000015710	SRL	58	74.359	Haplochromis_burtoni
ENSORLG00015009342	srl	93	81.278	ENSHGLG00000015271	SRL	100	79.873	Heterocephalus_glaber_female
ENSORLG00015009342	srl	93	81.278	ENSHGLG00100019378	SRL	100	79.873	Heterocephalus_glaber_male
ENSORLG00015009342	srl	98	94.549	ENSHCOG00000008687	srl	99	96.205	Hippocampus_comes
ENSORLG00015009342	srl	91	74.725	ENSHCOG00000001012	SRL	50	74.725	Hippocampus_comes
ENSORLG00015009342	srl	97	90.062	ENSIPUG00000012513	srl	100	90.062	Ictalurus_punctatus
ENSORLG00015009342	srl	90	69.725	ENSIPUG00000011609	SRL	95	69.725	Ictalurus_punctatus
ENSORLG00015009342	srl	94	80.131	ENSSTOG00000021151	-	100	79.449	Ictidomys_tridecemlineatus
ENSORLG00015009342	srl	97	80.508	ENSJJAG00000016400	Srl	100	80.508	Jaculus_jaculus
ENSORLG00015009342	srl	95	94.492	ENSKMAG00000014115	srl	95	94.492	Kryptolebias_marmoratus
ENSORLG00015009342	srl	91	76.644	ENSKMAG00000019537	SRL	100	76.644	Kryptolebias_marmoratus
ENSORLG00015009342	srl	97	95.329	ENSLBEG00000026643	srl	100	95.329	Labrus_bergylta
ENSORLG00015009342	srl	94	74.292	ENSLBEG00000013811	SRL	95	76.244	Labrus_bergylta
ENSORLG00015009342	srl	97	81.159	ENSLACG00000002825	SRL	98	83.710	Latimeria_chalumnae
ENSORLG00015009342	srl	96	86.510	ENSLOCG00000002644	srl	94	89.165	Lepisosteus_oculatus
ENSORLG00015009342	srl	94	79.650	ENSLAFG00000006329	SRL	50	81.674	Loxodonta_africana
ENSORLG00015009342	srl	88	82.326	ENSMFAG00000037383	SRL	99	82.326	Macaca_fascicularis
ENSORLG00015009342	srl	97	78.013	ENSMNEG00000019236	-	95	80.488	Macaca_nemestrina
ENSORLG00015009342	srl	93	74.058	ENSMLEG00000032156	SRL	100	72.727	Mandrillus_leucophaeus
ENSORLG00015009342	srl	91	75.771	ENSMAMG00000013756	SRL	53	75.771	Mastacembelus_armatus
ENSORLG00015009342	srl	91	96.171	ENSMAMG00000023322	srl	96	95.575	Mastacembelus_armatus
ENSORLG00015009342	srl	93	74.145	ENSMZEG00005004010	SRL	59	74.145	Maylandia_zebra
ENSORLG00015009342	srl	97	96.687	ENSMZEG00005004548	srl	100	95.643	Maylandia_zebra
ENSORLG00015009342	srl	93	81.057	ENSMGAG00000009342	SRL	96	82.850	Meleagris_gallopavo
ENSORLG00015009342	srl	93	81.099	ENSMICG00000032307	SRL	100	79.281	Microcebus_murinus
ENSORLG00015009342	srl	97	79.237	ENSMOCG00000008208	Srl	100	79.237	Microtus_ochrogaster
ENSORLG00015009342	srl	93	94.889	ENSMMOG00000013970	srl	100	94.889	Mola_mola
ENSORLG00015009342	srl	91	74.505	ENSMMOG00000021572	SRL	99	74.505	Mola_mola
ENSORLG00015009342	srl	91	83.220	ENSMODG00000016380	-	50	83.220	Monodelphis_domestica
ENSORLG00015009342	srl	97	94.255	ENSMALG00000005039	srl	100	94.255	Monopterus_albus
ENSORLG00015009342	srl	86	77.566	ENSMALG00000000670	SRL	98	77.566	Monopterus_albus
ENSORLG00015009342	srl	93	82.444	MGP_CAROLIEiJ_G0020400	Srl	100	80.932	Mus_caroli
ENSORLG00015009342	srl	93	82.444	ENSMUSG00000022519	Srl	100	80.932	Mus_musculus
ENSORLG00015009342	srl	93	82.444	MGP_SPRETEiJ_G0021294	Srl	100	80.932	Mus_spretus
ENSORLG00015009342	srl	93	80.488	ENSMPUG00000015025	SRL	55	80.488	Mustela_putorius_furo
ENSORLG00015009342	srl	93	81.375	ENSMLUG00000030733	SRL	57	81.375	Myotis_lucifugus
ENSORLG00015009342	srl	93	81.938	ENSNGAG00000019741	Srl	100	80.508	Nannospalax_galili
ENSORLG00015009342	srl	93	73.932	ENSNBRG00000002422	SRL	57	75.455	Neolamprologus_brichardi
ENSORLG00015009342	srl	97	96.178	ENSNBRG00000023775	srl	100	95.106	Neolamprologus_brichardi
ENSORLG00015009342	srl	93	75.388	ENSNLEG00000029051	SRL	100	73.573	Nomascus_leucogenys
ENSORLG00015009342	srl	94	74.672	ENSOPRG00000000477	-	53	75.110	Ochotona_princeps
ENSORLG00015009342	srl	93	81.278	ENSODEG00000013256	SRL	100	79.661	Octodon_degus
ENSORLG00015009342	srl	97	96.687	ENSONIG00000005192	srl	100	95.643	Oreochromis_niloticus
ENSORLG00015009342	srl	91	74.944	ENSORLG00000015064	SRL	97	74.944	Oryzias_latipes
ENSORLG00015009342	srl	100	99.197	ENSORLG00000008291	srl	100	99.197	Oryzias_latipes
ENSORLG00015009342	srl	91	75.169	ENSORLG00020018173	SRL	97	75.169	Oryzias_latipes_hni
ENSORLG00015009342	srl	100	99.598	ENSORLG00020019784	srl	88	99.598	Oryzias_latipes_hni
ENSORLG00015009342	srl	93	72.532	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSORLG00015009342	srl	97	98.755	ENSOMEG00000010006	srl	100	98.755	Oryzias_melastigma
ENSORLG00015009342	srl	93	80.176	ENSOGAG00000029266	SRL	55	80.176	Otolemur_garnettii
ENSORLG00015009342	srl	94	81.004	ENSOARG00000003074	SRL	56	81.556	Ovis_aries
ENSORLG00015009342	srl	93	80.488	ENSPPAG00000024919	-	99	82.326	Pan_paniscus
ENSORLG00015009342	srl	97	78.224	ENSPPRG00000010274	SRL	99	82.093	Panthera_pardus
ENSORLG00015009342	srl	97	78.224	ENSPTIG00000015162	SRL	99	82.093	Panthera_tigris_altaica
ENSORLG00015009342	srl	93	80.488	ENSPTRG00000007712	SRL	99	82.326	Pan_troglodytes
ENSORLG00015009342	srl	94	79.913	ENSPANG00000013804	SRL	97	80.488	Papio_anubis
ENSORLG00015009342	srl	97	89.485	ENSPKIG00000006405	srl	100	89.485	Paramormyrops_kingsleyae
ENSORLG00015009342	srl	99	77.413	ENSPKIG00000024974	SRL	97	77.413	Paramormyrops_kingsleyae
ENSORLG00015009342	srl	92	80.931	ENSPSIG00000008586	SRL	50	80.931	Pelodiscus_sinensis
ENSORLG00015009342	srl	94	93.013	ENSPMGG00000021081	srl	97	94.027	Periophthalmus_magnuspinnatus
ENSORLG00015009342	srl	91	75.566	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSORLG00015009342	srl	93	81.057	ENSPEMG00000015842	Srl	100	79.873	Peromyscus_maniculatus_bairdii
ENSORLG00015009342	srl	87	67.735	ENSPMAG00000004786	srl	99	67.735	Petromyzon_marinus
ENSORLG00015009342	srl	92	81.778	ENSPCIG00000012128	SRL	98	81.778	Phascolarctos_cinereus
ENSORLG00015009342	srl	100	94.779	ENSPFOG00000011408	srl	99	94.779	Poecilia_formosa
ENSORLG00015009342	srl	94	94.541	ENSPLAG00000008017	srl	98	95.778	Poecilia_latipinna
ENSORLG00015009342	srl	94	74.786	ENSPLAG00000002932	SRL	99	77.252	Poecilia_latipinna
ENSORLG00015009342	srl	94	74.786	ENSPMEG00000005890	SRL	61	74.514	Poecilia_mexicana
ENSORLG00015009342	srl	100	94.650	ENSPMEG00000006745	srl	98	95.778	Poecilia_mexicana
ENSORLG00015009342	srl	94	75.641	ENSPREG00000000315	SRL	100	77.506	Poecilia_reticulata
ENSORLG00015009342	srl	100	94.779	ENSPREG00000007751	srl	100	95.787	Poecilia_reticulata
ENSORLG00015009342	srl	86	83.771	ENSPPYG00000007053	SRL	98	83.771	Pongo_abelii
ENSORLG00015009342	srl	91	82.766	ENSPCAG00000003378	-	50	82.766	Procavia_capensis
ENSORLG00015009342	srl	93	81.099	ENSPCOG00000023135	SRL	99	83.023	Propithecus_coquereli
ENSORLG00015009342	srl	93	81.153	ENSPVAG00000006586	SRL	55	81.153	Pteropus_vampyrus
ENSORLG00015009342	srl	97	96.480	ENSPNYG00000001200	srl	100	95.436	Pundamilia_nyererei
ENSORLG00015009342	srl	93	74.145	ENSPNYG00000003423	SRL	58	74.145	Pundamilia_nyererei
ENSORLG00015009342	srl	97	89.834	ENSPNAG00000023106	srl	100	89.834	Pygocentrus_nattereri
ENSORLG00015009342	srl	98	71.757	ENSPNAG00000007361	-	91	75.510	Pygocentrus_nattereri
ENSORLG00015009342	srl	94	80.786	ENSRNOG00000005269	Srl	50	81.498	Rattus_norvegicus
ENSORLG00015009342	srl	94	79.476	ENSRBIG00000042358	SRL	50	80.176	Rhinopithecus_bieti
ENSORLG00015009342	srl	91	81.900	ENSSBOG00000029273	SRL	100	78.858	Saimiri_boliviensis_boliviensis
ENSORLG00015009342	srl	96	79.487	ENSSHAG00000011715	-	53	79.487	Sarcophilus_harrisii
ENSORLG00015009342	srl	91	76.802	ENSSFOG00015021327	SRL	51	74.837	Scleropages_formosus
ENSORLG00015009342	srl	97	90.289	ENSSFOG00015009773	srl	100	90.289	Scleropages_formosus
ENSORLG00015009342	srl	91	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSORLG00015009342	srl	97	94.904	ENSSMAG00000016274	srl	100	94.904	Scophthalmus_maximus
ENSORLG00015009342	srl	91	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSORLG00015009342	srl	91	96.847	ENSSDUG00000010808	srl	98	96.847	Seriola_dumerili
ENSORLG00015009342	srl	97	95.851	ENSSLDG00000022024	srl	100	95.851	Seriola_lalandi_dorsalis
ENSORLG00015009342	srl	91	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSORLG00015009342	srl	92	81.069	ENSSPUG00000016859	SRL	99	81.069	Sphenodon_punctatus
ENSORLG00015009342	srl	91	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSORLG00015009342	srl	97	96.281	ENSSPAG00000019105	srl	100	96.281	Stegastes_partitus
ENSORLG00015009342	srl	93	80.574	ENSSSCG00000007949	SRL	98	82.086	Sus_scrofa
ENSORLG00015009342	srl	74	85.912	ENSTGUG00000016121	-	100	85.912	Taeniopygia_guttata
ENSORLG00015009342	srl	91	82.727	ENSTGUG00000003951	-	97	82.727	Taeniopygia_guttata
ENSORLG00015009342	srl	97	95.106	ENSTRUG00000006005	srl	100	95.106	Takifugu_rubripes
ENSORLG00015009342	srl	86	78.043	ENSTRUG00000013310	SRL	55	77.857	Takifugu_rubripes
ENSORLG00015009342	srl	97	94.468	ENSTNIG00000009739	srl	100	94.468	Tetraodon_nigroviridis
ENSORLG00015009342	srl	91	81.674	ENSUAMG00000005701	SRL	55	81.674	Ursus_americanus
ENSORLG00015009342	srl	91	81.674	ENSUMAG00000002574	SRL	55	81.674	Ursus_maritimus
ENSORLG00015009342	srl	93	79.956	ENSVVUG00000016331	-	50	79.956	Vulpes_vulpes
ENSORLG00015009342	srl	96	78.038	ENSXETG00000017313	srl	98	81.038	Xenopus_tropicalis
ENSORLG00015009342	srl	87	96.217	ENSXCOG00000010424	srl	97	96.217	Xiphophorus_couchianus
ENSORLG00015009342	srl	93	77.384	ENSXCOG00000014584	SRL	100	77.384	Xiphophorus_couchianus
ENSORLG00015009342	srl	100	94.578	ENSXMAG00000004625	srl	99	94.578	Xiphophorus_maculatus
ENSORLG00015009342	srl	94	75.000	ENSXMAG00000027598	SRL	63	75.162	Xiphophorus_maculatus