EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015009679 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 9610 bases
Position: chr6:25460058-25469667
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015027543	HVSL	PF09749.9	2.5e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015000075	-	5700	-	ENSORLP00015027543	270 (aa)	-	-

Gene Model

Click here to download ENSORLG00015009679's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009679's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009679	usb1	84	50.877	ENSG00000103005	USB1	100	52.336	Homo_sapiens
ENSORLG00015009679	usb1	100	72.143	ENSAPOG00000011942	usb1	88	77.236	Acanthochromis_polyacanthus
ENSORLG00015009679	usb1	83	50.446	ENSAMEG00000017205	USB1	83	50.446	Ailuropoda_melanoleuca
ENSORLG00015009679	usb1	88	74.074	ENSACIG00000012234	usb1	90	74.074	Amphilophus_citrinellus
ENSORLG00015009679	usb1	99	71.174	ENSAOCG00000014831	usb1	87	77.551	Amphiprion_ocellaris
ENSORLG00015009679	usb1	99	71.530	ENSAPEG00000000296	usb1	87	77.551	Amphiprion_percula
ENSORLG00015009679	usb1	99	69.643	ENSATEG00000009348	usb1	93	72.692	Anabas_testudineus
ENSORLG00015009679	usb1	82	54.222	ENSAPLG00000002756	USB1	99	54.222	Anas_platyrhynchos
ENSORLG00015009679	usb1	82	49.778	ENSACAG00000015481	USB1	98	49.778	Anolis_carolinensis
ENSORLG00015009679	usb1	84	49.561	ENSANAG00000035640	USB1	86	49.561	Aotus_nancymaae
ENSORLG00015009679	usb1	96	71.429	ENSACLG00000020586	usb1	91	71.984	Astatotilapia_calliptera
ENSORLG00015009679	usb1	83	63.393	ENSAMXG00000040146	usb1	74	63.393	Astyanax_mexicanus
ENSORLG00015009679	usb1	99	46.296	ENSBTAG00000015758	USB1	93	45.136	Bos_taurus
ENSORLG00015009679	usb1	84	50.877	ENSCJAG00000011733	USB1	86	50.877	Callithrix_jacchus
ENSORLG00015009679	usb1	86	47.639	ENSCAFG00000008556	USB1	62	47.639	Canis_familiaris
ENSORLG00015009679	usb1	99	46.296	ENSCAFG00020009263	USB1	84	49.776	Canis_lupus_dingo
ENSORLG00015009679	usb1	99	45.926	ENSCHIG00000024290	USB1	93	44.747	Capra_hircus
ENSORLG00015009679	usb1	84	49.123	ENSTSYG00000006997	USB1	86	49.123	Carlito_syrichta
ENSORLG00015009679	usb1	85	40.693	ENSCAPG00000009057	USB1	99	40.693	Cavia_aperea
ENSORLG00015009679	usb1	99	46.863	ENSCPOG00000014325	USB1	89	48.750	Cavia_porcellus
ENSORLG00015009679	usb1	84	50.439	ENSCCAG00000022132	USB1	86	50.439	Cebus_capucinus
ENSORLG00015009679	usb1	84	50.877	ENSCATG00000032174	USB1	86	50.877	Cercocebus_atys
ENSORLG00015009679	usb1	64	50.867	ENSCLAG00000007363	USB1	87	52.941	Chinchilla_lanigera
ENSORLG00015009679	usb1	84	50.439	ENSCSAG00000004783	USB1	86	50.439	Chlorocebus_sabaeus
ENSORLG00015009679	usb1	87	52.542	ENSCPBG00000026943	USB1	85	52.542	Chrysemys_picta_bellii
ENSORLG00015009679	usb1	83	31.330	ENSCING00000011490	-	87	31.034	Ciona_intestinalis
ENSORLG00015009679	usb1	82	31.140	ENSCSAVG00000000894	-	83	31.140	Ciona_savignyi
ENSORLG00015009679	usb1	84	51.316	ENSCANG00000037135	USB1	86	51.770	Colobus_angolensis_palliatus
ENSORLG00015009679	usb1	99	46.667	ENSCGRG00001011243	USB1	84	51.339	Cricetulus_griseus_chok1gshd
ENSORLG00015009679	usb1	99	46.667	ENSCGRG00000013252	USB1	84	51.339	Cricetulus_griseus_crigri
ENSORLG00015009679	usb1	99	65.328	ENSCSEG00000013881	usb1	86	69.748	Cynoglossus_semilaevis
ENSORLG00015009679	usb1	83	74.890	ENSCVAG00000009252	usb1	97	74.890	Cyprinodon_variegatus
ENSORLG00015009679	usb1	83	61.161	ENSDARG00000003841	usb1	81	61.161	Danio_rerio
ENSORLG00015009679	usb1	83	50.000	ENSDORG00000001888	Usb1	85	50.000	Dipodomys_ordii
ENSORLG00015009679	usb1	76	41.262	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSORLG00015009679	usb1	99	38.662	ENSETEG00000019682	USB1	84	42.411	Echinops_telfairi
ENSORLG00015009679	usb1	99	40.351	ENSEBUG00000005889	usb1	81	44.828	Eptatretus_burgeri
ENSORLG00015009679	usb1	99	46.667	ENSEASG00005005484	USB1	89	47.755	Equus_asinus_asinus
ENSORLG00015009679	usb1	99	46.296	ENSECAG00000019493	USB1	81	47.541	Equus_caballus
ENSORLG00015009679	usb1	64	46.821	ENSEEUG00000000154	USB1	58	47.712	Erinaceus_europaeus
ENSORLG00015009679	usb1	87	64.407	ENSELUG00000010974	usb1	86	64.407	Esox_lucius
ENSORLG00015009679	usb1	99	46.097	ENSFCAG00000002693	USB1	84	49.554	Felis_catus
ENSORLG00015009679	usb1	85	53.913	ENSFALG00000006876	USB1	92	51.429	Ficedula_albicollis
ENSORLG00015009679	usb1	99	47.970	ENSFDAG00000010052	USB1	87	49.785	Fukomys_damarensis
ENSORLG00015009679	usb1	88	66.803	ENSFHEG00000012334	usb1	83	73.558	Fundulus_heteroclitus
ENSORLG00015009679	usb1	83	69.955	ENSGMOG00000004228	usb1	100	69.955	Gadus_morhua
ENSORLG00015009679	usb1	82	54.260	ENSGALG00000035604	USB1	88	54.464	Gallus_gallus
ENSORLG00015009679	usb1	100	71.377	ENSGAFG00000021890	usb1	94	71.815	Gambusia_affinis
ENSORLG00015009679	usb1	88	74.370	ENSGACG00000003257	usb1	86	74.370	Gasterosteus_aculeatus
ENSORLG00015009679	usb1	99	51.852	ENSGAGG00000022572	USB1	82	56.054	Gopherus_agassizii
ENSORLG00015009679	usb1	84	51.316	ENSGGOG00000017147	USB1	86	51.316	Gorilla_gorilla
ENSORLG00015009679	usb1	96	71.429	ENSHBUG00000009823	usb1	91	71.984	Haplochromis_burtoni
ENSORLG00015009679	usb1	99	47.426	ENSHGLG00000016078	USB1	82	50.224	Heterocephalus_glaber_female
ENSORLG00015009679	usb1	99	47.426	ENSHGLG00100005562	USB1	82	50.224	Heterocephalus_glaber_male
ENSORLG00015009679	usb1	81	73.394	ENSHCOG00000015633	usb1	87	73.661	Hippocampus_comes
ENSORLG00015009679	usb1	99	52.778	ENSIPUG00000008601	usb1	79	61.233	Ictalurus_punctatus
ENSORLG00015009679	usb1	83	51.339	ENSSTOG00000007548	USB1	82	51.339	Ictidomys_tridecemlineatus
ENSORLG00015009679	usb1	99	46.691	ENSJJAG00000021859	Usb1	84	51.339	Jaculus_jaculus
ENSORLG00015009679	usb1	94	75.686	ENSKMAG00000007200	usb1	89	75.686	Kryptolebias_marmoratus
ENSORLG00015009679	usb1	97	66.790	ENSLBEG00000008452	usb1	76	69.008	Labrus_bergylta
ENSORLG00015009679	usb1	80	49.776	ENSLACG00000000105	USB1	76	50.673	Latimeria_chalumnae
ENSORLG00015009679	usb1	83	57.589	ENSLOCG00000000465	usb1	79	57.589	Lepisosteus_oculatus
ENSORLG00015009679	usb1	99	39.855	ENSLAFG00000002267	USB1	84	41.702	Loxodonta_africana
ENSORLG00015009679	usb1	84	50.877	ENSMFAG00000003926	USB1	86	50.877	Macaca_fascicularis
ENSORLG00015009679	usb1	84	50.877	ENSMMUG00000022669	USB1	86	50.877	Macaca_mulatta
ENSORLG00015009679	usb1	84	50.439	ENSMNEG00000042487	USB1	86	50.439	Macaca_nemestrina
ENSORLG00015009679	usb1	84	50.877	ENSMLEG00000028756	USB1	86	50.877	Mandrillus_leucophaeus
ENSORLG00015009679	usb1	99	70.758	ENSMAMG00000015092	usb1	94	71.538	Mastacembelus_armatus
ENSORLG00015009679	usb1	96	71.429	ENSMZEG00005010008	usb1	91	71.984	Maylandia_zebra
ENSORLG00015009679	usb1	99	47.426	ENSMAUG00000007832	Usb1	84	51.339	Mesocricetus_auratus
ENSORLG00015009679	usb1	83	51.339	ENSMICG00000004900	USB1	93	46.693	Microcebus_murinus
ENSORLG00015009679	usb1	99	47.794	ENSMOCG00000022647	Usb1	84	51.786	Microtus_ochrogaster
ENSORLG00015009679	usb1	99	66.914	ENSMMOG00000000490	usb1	87	73.661	Mola_mola
ENSORLG00015009679	usb1	79	52.093	ENSMODG00000014067	USB1	84	51.786	Monodelphis_domestica
ENSORLG00015009679	usb1	94	72.481	ENSMALG00000005930	usb1	93	72.414	Monopterus_albus
ENSORLG00015009679	usb1	99	47.794	MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	Mus_caroli
ENSORLG00015009679	usb1	99	47.426	ENSMUSG00000031792	Usb1	99	49.107	Mus_musculus
ENSORLG00015009679	usb1	84	51.316	MGP_PahariEiJ_G0023019	Usb1	100	50.427	Mus_pahari
ENSORLG00015009679	usb1	99	47.794	MGP_SPRETEiJ_G0032540	Usb1	85	50.877	Mus_spretus
ENSORLG00015009679	usb1	83	50.000	ENSMPUG00000004684	USB1	80	50.000	Mustela_putorius_furo
ENSORLG00015009679	usb1	83	51.786	ENSMLUG00000007400	USB1	97	51.786	Myotis_lucifugus
ENSORLG00015009679	usb1	99	48.175	ENSNGAG00000009703	Usb1	91	48.828	Nannospalax_galili
ENSORLG00015009679	usb1	96	65.251	ENSNBRG00000008747	usb1	100	74.299	Neolamprologus_brichardi
ENSORLG00015009679	usb1	77	52.153	ENSNLEG00000003340	USB1	84	52.153	Nomascus_leucogenys
ENSORLG00015009679	usb1	99	48.708	ENSODEG00000016214	USB1	85	51.982	Octodon_degus
ENSORLG00015009679	usb1	99	70.144	ENSONIG00000011063	usb1	91	73.047	Oreochromis_niloticus
ENSORLG00015009679	usb1	86	49.785	ENSOANG00000012118	USB1	97	49.785	Ornithorhynchus_anatinus
ENSORLG00015009679	usb1	100	98.162	ENSORLG00000012479	usb1	100	98.162	Oryzias_latipes
ENSORLG00015009679	usb1	100	97.048	ENSORLG00020018671	usb1	100	97.048	Oryzias_latipes_hni
ENSORLG00015009679	usb1	94	91.339	ENSOMEG00000012930	usb1	93	91.406	Oryzias_melastigma
ENSORLG00015009679	usb1	83	48.214	ENSOGAG00000003273	USB1	83	48.214	Otolemur_garnettii
ENSORLG00015009679	usb1	91	46.215	ENSOARG00000001107	USB1	96	46.215	Ovis_aries
ENSORLG00015009679	usb1	84	50.877	ENSPPAG00000042137	USB1	86	50.877	Pan_paniscus
ENSORLG00015009679	usb1	99	45.725	ENSPPRG00000024797	USB1	84	49.107	Panthera_pardus
ENSORLG00015009679	usb1	99	43.123	ENSPTIG00000007506	USB1	84	48.661	Panthera_tigris_altaica
ENSORLG00015009679	usb1	93	44.664	ENSPTRG00000008172	USB1	100	52.804	Pan_troglodytes
ENSORLG00015009679	usb1	84	50.877	ENSPANG00000025138	USB1	86	50.877	Papio_anubis
ENSORLG00015009679	usb1	83	62.222	ENSPKIG00000015109	usb1	76	62.222	Paramormyrops_kingsleyae
ENSORLG00015009679	usb1	83	43.096	ENSPSIG00000004305	USB1	100	43.096	Pelodiscus_sinensis
ENSORLG00015009679	usb1	84	65.639	ENSPMGG00000017725	usb1	87	65.639	Periophthalmus_magnuspinnatus
ENSORLG00015009679	usb1	99	45.487	ENSPEMG00000016183	Usb1	90	46.875	Peromyscus_maniculatus_bairdii
ENSORLG00015009679	usb1	82	50.667	ENSPMAG00000000462	usb1	95	50.667	Petromyzon_marinus
ENSORLG00015009679	usb1	100	71.480	ENSPFOG00000011130	usb1	87	76.349	Poecilia_formosa
ENSORLG00015009679	usb1	100	71.119	ENSPLAG00000009820	usb1	87	75.934	Poecilia_latipinna
ENSORLG00015009679	usb1	100	71.480	ENSPMEG00000006402	usb1	94	71.923	Poecilia_mexicana
ENSORLG00015009679	usb1	88	70.492	ENSPREG00000001047	usb1	92	72.247	Poecilia_reticulata
ENSORLG00015009679	usb1	77	49.524	ENSPPYG00000007401	USB1	83	49.524	Pongo_abelii
ENSORLG00015009679	usb1	94	46.094	ENSPCOG00000022612	USB1	93	45.914	Propithecus_coquereli
ENSORLG00015009679	usb1	99	45.185	ENSPVAG00000004613	USB1	86	49.107	Pteropus_vampyrus
ENSORLG00015009679	usb1	96	71.429	ENSPNYG00000022262	usb1	91	71.984	Pundamilia_nyererei
ENSORLG00015009679	usb1	87	61.441	ENSPNAG00000011736	usb1	80	61.441	Pygocentrus_nattereri
ENSORLG00015009679	usb1	99	48.162	ENSRNOG00000013216	Usb1	92	48.047	Rattus_norvegicus
ENSORLG00015009679	usb1	84	48.246	ENSRBIG00000044466	USB1	100	52.336	Rhinopithecus_bieti
ENSORLG00015009679	usb1	84	50.877	ENSRROG00000029211	USB1	86	50.877	Rhinopithecus_roxellana
ENSORLG00015009679	usb1	94	47.638	ENSSBOG00000029362	USB1	92	47.451	Saimiri_boliviensis_boliviensis
ENSORLG00015009679	usb1	81	48.858	ENSSHAG00000006993	USB1	89	50.000	Sarcophilus_harrisii
ENSORLG00015009679	usb1	84	63.717	ENSSFOG00015023663	usb1	71	63.717	Scleropages_formosus
ENSORLG00015009679	usb1	94	69.259	ENSSMAG00000015834	usb1	92	69.259	Scophthalmus_maximus
ENSORLG00015009679	usb1	85	79.476	ENSSDUG00000002949	usb1	85	79.476	Seriola_dumerili
ENSORLG00015009679	usb1	89	78.243	ENSSLDG00000014174	usb1	85	78.243	Seriola_lalandi_dorsalis
ENSORLG00015009679	usb1	79	52.804	ENSSPUG00000006741	USB1	100	52.804	Sphenodon_punctatus
ENSORLG00015009679	usb1	99	72.183	ENSSPAG00000007484	usb1	93	74.242	Stegastes_partitus
ENSORLG00015009679	usb1	99	46.350	ENSSSCG00000002807	USB1	92	47.082	Sus_scrofa
ENSORLG00015009679	usb1	78	56.398	ENSTGUG00000004792	USB1	86	55.204	Taeniopygia_guttata
ENSORLG00015009679	usb1	99	70.260	ENSTRUG00000021069	usb1	91	72.358	Takifugu_rubripes
ENSORLG00015009679	usb1	99	59.779	ENSTNIG00000000626	usb1	83	65.022	Tetraodon_nigroviridis
ENSORLG00015009679	usb1	83	36.607	ENSTBEG00000001507	USB1	97	36.607	Tupaia_belangeri
ENSORLG00015009679	usb1	99	45.725	ENSUAMG00000016823	USB1	83	50.893	Ursus_americanus
ENSORLG00015009679	usb1	79	50.935	ENSUMAG00000021369	USB1	100	50.935	Ursus_maritimus
ENSORLG00015009679	usb1	93	45.455	ENSVVUG00000023700	USB1	98	45.455	Vulpes_vulpes
ENSORLG00015009679	usb1	79	55.140	ENSXETG00000013795	usb1	89	54.260	Xenopus_tropicalis
ENSORLG00015009679	usb1	89	75.934	ENSXMAG00000024687	usb1	71	75.934	Xiphophorus_maculatus