EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015009979 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 14555 bases
Position: chr11:24409782-24424336
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015009175	CPSF_A	PF03178.15	3.7e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015015399	-	8259	-	ENSORLP00015009175	1463 (aa)	-	-
ENSORLT00015015311	-	1185	-	ENSORLP00015027694	394 (aa)	-	-

Gene Model

Click here to download ENSORLG00015009979's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015009979's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015009979	cpsf1	100	77.362	ENSG00000071894	CPSF1	100	77.778	Homo_sapiens
ENSORLG00015009979	cpsf1	100	90.693	ENSAPOG00000019621	cpsf1	100	90.829	Acanthochromis_polyacanthus
ENSORLG00015009979	cpsf1	97	76.261	ENSAMEG00000005557	CPSF1	99	76.787	Ailuropoda_melanoleuca
ENSORLG00015009979	cpsf1	100	88.079	ENSACIG00000006112	cpsf1	100	88.215	Amphilophus_citrinellus
ENSORLG00015009979	cpsf1	100	88.527	ENSAOCG00000007120	cpsf1	100	88.595	Amphiprion_ocellaris
ENSORLG00015009979	cpsf1	100	89.341	ENSAPEG00000005755	cpsf1	100	89.545	Amphiprion_percula
ENSORLG00015009979	cpsf1	100	89.824	ENSATEG00000011097	cpsf1	100	90.163	Anabas_testudineus
ENSORLG00015009979	cpsf1	93	74.726	ENSACAG00000009655	CPSF1	100	75.018	Anolis_carolinensis
ENSORLG00015009979	cpsf1	100	77.566	ENSANAG00000036514	CPSF1	100	77.566	Aotus_nancymaae
ENSORLG00015009979	cpsf1	99	89.842	ENSACLG00000012231	cpsf1	99	89.880	Astatotilapia_calliptera
ENSORLG00015009979	cpsf1	100	77.695	ENSAMXG00000008485	cpsf1	100	77.356	Astyanax_mexicanus
ENSORLG00015009979	cpsf1	100	76.235	ENSBTAG00000008355	CPSF1	100	76.923	Bos_taurus
ENSORLG00015009979	cpsf1	100	32.185	WBGene00022301	cpsf-1	99	40.678	Caenorhabditis_elegans
ENSORLG00015009979	cpsf1	100	77.498	ENSCJAG00000021421	CPSF1	100	77.430	Callithrix_jacchus
ENSORLG00015009979	cpsf1	96	78.129	ENSCAFG00000001600	CPSF1	99	78.541	Canis_familiaris
ENSORLG00015009979	cpsf1	100	77.612	ENSCAFG00020020821	CPSF1	100	77.680	Canis_lupus_dingo
ENSORLG00015009979	cpsf1	100	73.963	ENSCHIG00000015833	CPSF1	100	73.623	Capra_hircus
ENSORLG00015009979	cpsf1	100	77.853	ENSTSYG00000028560	CPSF1	100	78.241	Carlito_syrichta
ENSORLG00015009979	cpsf1	97	76.826	ENSCAPG00000014921	CPSF1	98	77.337	Cavia_aperea
ENSORLG00015009979	cpsf1	100	76.275	ENSCPOG00000011448	CPSF1	100	76.207	Cavia_porcellus
ENSORLG00015009979	cpsf1	100	77.566	ENSCCAG00000037658	CPSF1	100	77.982	Cebus_capucinus
ENSORLG00015009979	cpsf1	100	77.566	ENSCATG00000037234	CPSF1	99	79.104	Cercocebus_atys
ENSORLG00015009979	cpsf1	100	77.551	ENSCLAG00000012166	CPSF1	100	77.483	Chinchilla_lanigera
ENSORLG00015009979	cpsf1	100	77.362	ENSCSAG00000008502	CPSF1	100	77.362	Chlorocebus_sabaeus
ENSORLG00015009979	cpsf1	99	79.945	ENSCPBG00000018910	CPSF1	96	79.945	Chrysemys_picta_bellii
ENSORLG00015009979	cpsf1	96	48.127	ENSCING00000000514	-	100	47.986	Ciona_intestinalis
ENSORLG00015009979	cpsf1	99	48.509	ENSCSAVG00000002293	-	98	52.582	Ciona_savignyi
ENSORLG00015009979	cpsf1	98	74.896	ENSCANG00000032760	CPSF1	100	78.241	Colobus_angolensis_palliatus
ENSORLG00015009979	cpsf1	100	77.483	ENSCGRG00001016344	Cpsf1	100	77.551	Cricetulus_griseus_chok1gshd
ENSORLG00015009979	cpsf1	100	75.714	ENSCGRG00000003118	Cpsf1	100	75.782	Cricetulus_griseus_crigri
ENSORLG00015009979	cpsf1	100	85.490	ENSCSEG00000013464	cpsf1	99	87.655	Cynoglossus_semilaevis
ENSORLG00015009979	cpsf1	86	88.042	ENSCVAG00000014059	cpsf1	100	83.333	Cyprinodon_variegatus
ENSORLG00015009979	cpsf1	100	85.977	ENSDARG00000034178	cpsf1	100	85.977	Danio_rerio
ENSORLG00015009979	cpsf1	57	80.347	ENSDNOG00000043654	CPSF1	94	80.925	Dasypus_novemcinctus
ENSORLG00015009979	cpsf1	97	77.887	ENSDORG00000006278	Cpsf1	99	78.116	Dipodomys_ordii
ENSORLG00015009979	cpsf1	100	43.857	FBgn0024698	Cpsf160	100	43.490	Drosophila_melanogaster
ENSORLG00015009979	cpsf1	81	81.879	ENSETEG00000006022	CPSF1	83	81.879	Echinops_telfairi
ENSORLG00015009979	cpsf1	100	77.883	ENSEASG00005010774	CPSF1	100	78.019	Equus_asinus_asinus
ENSORLG00015009979	cpsf1	100	77.748	ENSECAG00000022209	CPSF1	100	77.883	Equus_caballus
ENSORLG00015009979	cpsf1	100	77.220	ENSEEUG00000000471	CPSF1	100	77.153	Erinaceus_europaeus
ENSORLG00015009979	cpsf1	100	84.522	ENSELUG00000012271	cpsf1	100	84.306	Esox_lucius
ENSORLG00015009979	cpsf1	100	77.619	ENSFDAG00000016060	CPSF1	100	77.551	Fukomys_damarensis
ENSORLG00015009979	cpsf1	100	88.798	ENSFHEG00000016801	cpsf1	100	88.821	Fundulus_heteroclitus
ENSORLG00015009979	cpsf1	100	85.462	ENSGMOG00000000796	cpsf1	100	85.288	Gadus_morhua
ENSORLG00015009979	cpsf1	95	89.286	ENSGAFG00000018890	cpsf1	100	89.286	Gambusia_affinis
ENSORLG00015009979	cpsf1	100	87.830	ENSGACG00000008703	cpsf1	100	87.797	Gasterosteus_aculeatus
ENSORLG00015009979	cpsf1	100	77.017	ENSGAGG00000004276	CPSF1	98	80.722	Gopherus_agassizii
ENSORLG00015009979	cpsf1	100	77.415	ENSGGOG00000016185	CPSF1	100	77.778	Gorilla_gorilla
ENSORLG00015009979	cpsf1	100	89.474	ENSHBUG00000018900	cpsf1	100	89.474	Haplochromis_burtoni
ENSORLG00015009979	cpsf1	100	77.551	ENSHGLG00000016139	CPSF1	100	77.483	Heterocephalus_glaber_female
ENSORLG00015009979	cpsf1	100	77.551	ENSHGLG00100009750	CPSF1	100	77.483	Heterocephalus_glaber_male
ENSORLG00015009979	cpsf1	100	88.003	ENSHCOG00000018509	cpsf1	100	88.071	Hippocampus_comes
ENSORLG00015009979	cpsf1	100	81.220	ENSIPUG00000011259	cpsf1	100	81.220	Ictalurus_punctatus
ENSORLG00015009979	cpsf1	97	77.117	ENSSTOG00000009957	CPSF1	98	77.841	Ictidomys_tridecemlineatus
ENSORLG00015009979	cpsf1	100	77.687	ENSJJAG00000023002	Cpsf1	100	77.619	Jaculus_jaculus
ENSORLG00015009979	cpsf1	91	94.044	ENSKMAG00000001940	cpsf1	99	94.044	Kryptolebias_marmoratus
ENSORLG00015009979	cpsf1	100	87.679	ENSLBEG00000003601	cpsf1	100	88.707	Labrus_bergylta
ENSORLG00015009979	cpsf1	87	78.589	ENSLACG00000000233	CPSF1	92	78.469	Latimeria_chalumnae
ENSORLG00015009979	cpsf1	100	81.140	ENSLOCG00000008484	cpsf1	100	81.750	Lepisosteus_oculatus
ENSORLG00015009979	cpsf1	97	77.489	ENSLAFG00000022601	CPSF1	99	78.030	Loxodonta_africana
ENSORLG00015009979	cpsf1	100	77.498	ENSMFAG00000037013	CPSF1	99	79.104	Macaca_fascicularis
ENSORLG00015009979	cpsf1	100	77.498	ENSMMUG00000007380	CPSF1	100	77.778	Macaca_mulatta
ENSORLG00015009979	cpsf1	97	77.864	ENSMNEG00000043564	CPSF1	100	77.778	Macaca_nemestrina
ENSORLG00015009979	cpsf1	100	77.498	ENSMLEG00000043010	CPSF1	99	79.104	Mandrillus_leucophaeus
ENSORLG00015009979	cpsf1	100	90.761	ENSMAMG00000003803	cpsf1	100	90.761	Mastacembelus_armatus
ENSORLG00015009979	cpsf1	100	85.988	ENSMZEG00005001168	cpsf1	100	85.988	Maylandia_zebra
ENSORLG00015009979	cpsf1	100	77.347	ENSMAUG00000003601	Cpsf1	100	77.415	Mesocricetus_auratus
ENSORLG00015009979	cpsf1	100	77.551	ENSMICG00000015767	CPSF1	100	77.415	Microcebus_murinus
ENSORLG00015009979	cpsf1	100	77.415	ENSMOCG00000022758	Cpsf1	100	77.347	Microtus_ochrogaster
ENSORLG00015009979	cpsf1	100	88.639	ENSMMOG00000021245	cpsf1	100	88.503	Mola_mola
ENSORLG00015009979	cpsf1	100	78.441	ENSMODG00000010755	CPSF1	100	78.373	Monodelphis_domestica
ENSORLG00015009979	cpsf1	100	90.000	ENSMALG00000020545	cpsf1	100	90.204	Monopterus_albus
ENSORLG00015009979	cpsf1	100	77.687	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.619	Mus_caroli
ENSORLG00015009979	cpsf1	100	77.687	ENSMUSG00000034022	Cpsf1	100	77.619	Mus_musculus
ENSORLG00015009979	cpsf1	100	77.687	MGP_PahariEiJ_G0019946	Cpsf1	100	77.619	Mus_pahari
ENSORLG00015009979	cpsf1	100	77.755	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.687	Mus_spretus
ENSORLG00015009979	cpsf1	94	78.173	ENSMPUG00000006419	CPSF1	93	78.245	Mustela_putorius_furo
ENSORLG00015009979	cpsf1	100	77.619	ENSNGAG00000022460	Cpsf1	100	77.687	Nannospalax_galili
ENSORLG00015009979	cpsf1	100	83.003	ENSNBRG00000000813	cpsf1	100	83.003	Neolamprologus_brichardi
ENSORLG00015009979	cpsf1	86	69.058	ENSNLEG00000010633	-	100	77.778	Nomascus_leucogenys
ENSORLG00015009979	cpsf1	82	84.302	ENSMEUG00000014922	CPSF1	84	84.302	Notamacropus_eugenii
ENSORLG00015009979	cpsf1	61	86.772	ENSOPRG00000004693	-	70	86.772	Ochotona_princeps
ENSORLG00015009979	cpsf1	100	77.619	ENSODEG00000013995	CPSF1	100	77.551	Octodon_degus
ENSORLG00015009979	cpsf1	100	88.980	ENSONIG00000007676	cpsf1	100	89.116	Oreochromis_niloticus
ENSORLG00015009979	cpsf1	59	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSORLG00015009979	cpsf1	100	99.658	ENSORLG00000013544	cpsf1	100	99.658	Oryzias_latipes
ENSORLG00015009979	cpsf1	100	99.727	ENSORLG00020021693	cpsf1	100	99.727	Oryzias_latipes_hni
ENSORLG00015009979	cpsf1	100	95.970	ENSOMEG00000011849	cpsf1	100	95.902	Oryzias_melastigma
ENSORLG00015009979	cpsf1	100	77.702	ENSOGAG00000000315	CPSF1	100	77.702	Otolemur_garnettii
ENSORLG00015009979	cpsf1	100	77.430	ENSPPAG00000019280	CPSF1	100	78.733	Pan_paniscus
ENSORLG00015009979	cpsf1	100	76.136	ENSPTRG00000051253	-	100	78.733	Pan_troglodytes
ENSORLG00015009979	cpsf1	100	77.430	ENSPTRG00000049288	-	100	78.733	Pan_troglodytes
ENSORLG00015009979	cpsf1	97	77.864	ENSPANG00000015005	CPSF1	100	77.778	Papio_anubis
ENSORLG00015009979	cpsf1	100	84.636	ENSPKIG00000002582	cpsf1	100	84.804	Paramormyrops_kingsleyae
ENSORLG00015009979	cpsf1	100	78.576	ENSPCIG00000009035	CPSF1	100	78.508	Phascolarctos_cinereus
ENSORLG00015009979	cpsf1	100	90.415	ENSPFOG00000012870	cpsf1	100	90.823	Poecilia_formosa
ENSORLG00015009979	cpsf1	100	90.489	ENSPREG00000016307	cpsf1	100	90.897	Poecilia_reticulata
ENSORLG00015009979	cpsf1	100	70.584	ENSPPYG00000018973	CPSF1	100	70.380	Pongo_abelii
ENSORLG00015009979	cpsf1	91	83.523	ENSPCAG00000011541	CPSF1	93	83.523	Procavia_capensis
ENSORLG00015009979	cpsf1	100	74.167	ENSPCOG00000020001	CPSF1	100	77.778	Propithecus_coquereli
ENSORLG00015009979	cpsf1	91	86.000	ENSPVAG00000006761	CPSF1	91	86.000	Pteropus_vampyrus
ENSORLG00015009979	cpsf1	100	90.007	ENSPNYG00000004906	cpsf1	100	90.007	Pundamilia_nyererei
ENSORLG00015009979	cpsf1	100	79.918	ENSPNAG00000024395	cpsf1	100	79.850	Pygocentrus_nattereri
ENSORLG00015009979	cpsf1	100	77.589	ENSRNOG00000030705	Cpsf1	100	77.520	Rattus_norvegicus
ENSORLG00015009979	cpsf1	100	77.362	ENSRBIG00000044907	CPSF1	100	78.241	Rhinopithecus_bieti
ENSORLG00015009979	cpsf1	100	77.430	ENSRROG00000044861	CPSF1	100	78.241	Rhinopithecus_roxellana
ENSORLG00015009979	cpsf1	97	77.833	ENSSBOG00000027177	CPSF1	99	78.061	Saimiri_boliviensis_boliviensis
ENSORLG00015009979	cpsf1	100	78.441	ENSSHAG00000006500	CPSF1	100	78.373	Sarcophilus_harrisii
ENSORLG00015009979	cpsf1	100	82.745	ENSSFOG00015004606	cpsf1	100	85.039	Scleropages_formosus
ENSORLG00015009979	cpsf1	100	89.409	ENSSMAG00000020547	cpsf1	100	89.681	Scophthalmus_maximus
ENSORLG00015009979	cpsf1	100	89.276	ENSSDUG00000001100	cpsf1	100	89.481	Seriola_dumerili
ENSORLG00015009979	cpsf1	100	89.344	ENSSLDG00000003619	cpsf1	100	89.413	Seriola_lalandi_dorsalis
ENSORLG00015009979	cpsf1	89	74.270	ENSSARG00000003643	CPSF1	92	74.270	Sorex_araneus
ENSORLG00015009979	cpsf1	96	80.835	ENSSPUG00000014396	CPSF1	100	81.330	Sphenodon_punctatus
ENSORLG00015009979	cpsf1	100	90.149	ENSSPAG00000005349	cpsf1	100	90.625	Stegastes_partitus
ENSORLG00015009979	cpsf1	100	76.918	ENSSSCG00000005906	CPSF1	100	76.850	Sus_scrofa
ENSORLG00015009979	cpsf1	96	87.887	ENSTRUG00000013134	cpsf1	99	87.941	Takifugu_rubripes
ENSORLG00015009979	cpsf1	100	87.678	ENSTNIG00000014027	cpsf1	100	87.542	Tetraodon_nigroviridis
ENSORLG00015009979	cpsf1	78	71.405	ENSTBEG00000001756	CPSF1	91	70.608	Tupaia_belangeri
ENSORLG00015009979	cpsf1	89	82.586	ENSTTRG00000001937	CPSF1	90	82.931	Tursiops_truncatus
ENSORLG00015009979	cpsf1	97	77.926	ENSUAMG00000006476	CPSF1	97	78.470	Ursus_americanus
ENSORLG00015009979	cpsf1	100	89.269	ENSXCOG00000003608	cpsf1	100	89.405	Xiphophorus_couchianus
ENSORLG00015009979	cpsf1	100	88.456	ENSXMAG00000005798	cpsf1	100	88.798	Xiphophorus_maculatus