EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015010165 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 12511 bases
Position: chr4:14952899-14965409
Accession: 101168695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015027813	UPF1_Zn_bind	PF09416.10	1.5e-74	1	1
ENSORLP00015027858	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSORLP00015009336	UPF1_Zn_bind	PF09416.10	1.8e-74	1	1
ENSORLP00015027813	ResIII	PF04851.15	2.7e-05	1	1
ENSORLP00015027858	ResIII	PF04851.15	3.2e-05	1	1
ENSORLP00015009336	ResIII	PF04851.15	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015031342	-	2988	-	ENSORLP00015027813	995 (aa)	-	-
ENSORLT00015015654	-	3546	-	ENSORLP00015027858	1102 (aa)	XP_023810022	UPI000CE24B0C
ENSORLT00015015684	-	3573	-	ENSORLP00015009336	1112 (aa)	-	-

Gene Model

Click here to download ENSORLG00015010165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015010165's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015010165	upf1	100	92.246	ENSG00000005007	UPF1	100	92.246	Homo_sapiens
ENSORLG00015010165	upf1	100	97.822	ENSAPOG00000010916	-	100	97.822	Acanthochromis_polyacanthus
ENSORLG00015010165	upf1	100	92.322	ENSAPOG00000023773	upf1	100	92.748	Acanthochromis_polyacanthus
ENSORLG00015010165	upf1	100	91.925	ENSAMEG00000011474	UPF1	100	91.925	Ailuropoda_melanoleuca
ENSORLG00015010165	upf1	100	92.663	ENSACIG00000019949	upf1	100	92.857	Amphilophus_citrinellus
ENSORLG00015010165	upf1	100	92.795	ENSACIG00000010985	-	100	97.176	Amphilophus_citrinellus
ENSORLG00015010165	upf1	100	91.833	ENSAOCG00000018519	upf1	100	92.748	Amphiprion_ocellaris
ENSORLG00015010165	upf1	100	97.822	ENSAOCG00000006352	-	100	97.822	Amphiprion_ocellaris
ENSORLG00015010165	upf1	100	97.731	ENSAPEG00000006292	-	100	97.731	Amphiprion_percula
ENSORLG00015010165	upf1	100	91.833	ENSAPEG00000016344	upf1	100	92.748	Amphiprion_percula
ENSORLG00015010165	upf1	100	97.731	ENSATEG00000016606	-	100	97.731	Anabas_testudineus
ENSORLG00015010165	upf1	100	90.756	ENSATEG00000017867	upf1	100	92.150	Anabas_testudineus
ENSORLG00015010165	upf1	100	89.788	ENSAPLG00000009175	UPF1	100	93.655	Anas_platyrhynchos
ENSORLG00015010165	upf1	100	90.723	ENSANAG00000024107	UPF1	95	92.213	Aotus_nancymaae
ENSORLG00015010165	upf1	100	92.482	ENSACLG00000007181	upf1	100	92.676	Astatotilapia_calliptera
ENSORLG00015010165	upf1	100	97.280	ENSACLG00000022630	-	100	97.280	Astatotilapia_calliptera
ENSORLG00015010165	upf1	100	94.475	ENSAMXG00000042187	upf1	100	94.656	Astyanax_mexicanus
ENSORLG00015010165	upf1	100	91.858	ENSBTAG00000020922	UPF1	100	91.858	Bos_taurus
ENSORLG00015010165	upf1	83	53.526	WBGene00004880	smg-2	99	49.863	Caenorhabditis_elegans
ENSORLG00015010165	upf1	100	91.350	ENSCJAG00000019627	UPF1	100	91.350	Callithrix_jacchus
ENSORLG00015010165	upf1	100	91.615	ENSCAFG00000014578	UPF1	100	91.615	Canis_familiaris
ENSORLG00015010165	upf1	100	92.513	ENSCAFG00020012347	UPF1	100	92.513	Canis_lupus_dingo
ENSORLG00015010165	upf1	100	92.761	ENSCHIG00000011018	UPF1	100	92.761	Capra_hircus
ENSORLG00015010165	upf1	100	89.499	ENSTSYG00000008877	UPF1	98	93.352	Carlito_syrichta
ENSORLG00015010165	upf1	100	89.210	ENSCAPG00000005758	UPF1	95	93.162	Cavia_aperea
ENSORLG00015010165	upf1	100	92.460	ENSCPOG00000025463	UPF1	100	92.460	Cavia_porcellus
ENSORLG00015010165	upf1	100	92.246	ENSCCAG00000032175	UPF1	100	92.246	Cebus_capucinus
ENSORLG00015010165	upf1	100	89.692	ENSCATG00000040306	UPF1	97	93.798	Cercocebus_atys
ENSORLG00015010165	upf1	100	89.692	ENSCLAG00000004037	UPF1	99	93.542	Chinchilla_lanigera
ENSORLG00015010165	upf1	100	92.246	ENSCSAG00000005276	UPF1	100	92.246	Chlorocebus_sabaeus
ENSORLG00015010165	upf1	100	92.466	ENSCPBG00000012513	UPF1	100	92.735	Chrysemys_picta_bellii
ENSORLG00015010165	upf1	77	79.064	ENSCING00000021399	-	99	79.040	Ciona_intestinalis
ENSORLG00015010165	upf1	99	72.312	ENSCSAVG00000006533	-	99	72.491	Ciona_savignyi
ENSORLG00015010165	upf1	100	89.692	ENSCANG00000029819	UPF1	97	93.542	Colobus_angolensis_palliatus
ENSORLG00015010165	upf1	100	92.211	ENSCGRG00001021067	Upf1	100	92.211	Cricetulus_griseus_chok1gshd
ENSORLG00015010165	upf1	100	89.210	ENSCGRG00000013480	Upf1	98	93.067	Cricetulus_griseus_crigri
ENSORLG00015010165	upf1	100	87.228	ENSCSEG00000017239	upf1	100	87.500	Cynoglossus_semilaevis
ENSORLG00015010165	upf1	100	96.915	ENSCSEG00000016159	-	100	96.915	Cynoglossus_semilaevis
ENSORLG00015010165	upf1	100	97.278	ENSCVAG00000010561	upf1	100	97.278	Cyprinodon_variegatus
ENSORLG00015010165	upf1	100	94.022	ENSDARG00000016302	upf1	100	94.293	Danio_rerio
ENSORLG00015010165	upf1	100	86.994	ENSDORG00000009984	Upf1	95	90.883	Dipodomys_ordii
ENSORLG00015010165	upf1	86	71.218	FBgn0030354	Upf1	81	70.777	Drosophila_melanogaster
ENSORLG00015010165	upf1	54	86.184	ENSEBUG00000010069	upf1	96	86.799	Eptatretus_burgeri
ENSORLG00015010165	upf1	100	92.672	ENSEASG00005006549	UPF1	100	92.672	Equus_asinus_asinus
ENSORLG00015010165	upf1	100	92.672	ENSECAG00000010639	UPF1	100	92.672	Equus_caballus
ENSORLG00015010165	upf1	100	91.614	ENSELUG00000020917	upf1	100	92.245	Esox_lucius
ENSORLG00015010165	upf1	100	94.414	ENSELUG00000012916	-	100	94.414	Esox_lucius
ENSORLG00015010165	upf1	100	91.527	ENSFCAG00000009757	UPF1	100	91.527	Felis_catus
ENSORLG00015010165	upf1	100	90.398	ENSFALG00000009312	UPF1	96	94.185	Ficedula_albicollis
ENSORLG00015010165	upf1	100	89.595	ENSFDAG00000014816	UPF1	99	93.447	Fukomys_damarensis
ENSORLG00015010165	upf1	100	89.346	ENSFHEG00000006428	upf1	100	89.346	Fundulus_heteroclitus
ENSORLG00015010165	upf1	100	87.638	ENSFHEG00000016276	-	96	97.822	Fundulus_heteroclitus
ENSORLG00015010165	upf1	100	93.716	ENSGMOG00000007541	upf1	100	93.986	Gadus_morhua
ENSORLG00015010165	upf1	100	92.493	ENSGALG00000003220	UPF1	100	92.672	Gallus_gallus
ENSORLG00015010165	upf1	100	97.278	ENSGAFG00000004831	upf1	100	97.278	Gambusia_affinis
ENSORLG00015010165	upf1	64	92.697	ENSGAFG00000015443	-	88	92.190	Gambusia_affinis
ENSORLG00015010165	upf1	100	92.973	ENSGAGG00000022217	UPF1	100	93.153	Gopherus_agassizii
ENSORLG00015010165	upf1	100	90.652	ENSGGOG00000002608	UPF1	99	94.530	Gorilla_gorilla
ENSORLG00015010165	upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSORLG00015010165	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSORLG00015010165	upf1	100	91.086	ENSHGLG00000010900	UPF1	100	91.086	Heterocephalus_glaber_female
ENSORLG00015010165	upf1	100	87.861	ENSHGLG00100005904	UPF1	96	91.738	Heterocephalus_glaber_male
ENSORLG00015010165	upf1	100	96.827	ENSHCOG00000008918	upf1	100	96.827	Hippocampus_comes
ENSORLG00015010165	upf1	100	94.565	ENSIPUG00000005108	UPF1	100	94.746	Ictalurus_punctatus
ENSORLG00015010165	upf1	98	96.960	ENSSTOG00000009196	UPF1	100	92.246	Ictidomys_tridecemlineatus
ENSORLG00015010165	upf1	100	91.030	ENSJJAG00000023151	Upf1	100	91.119	Jaculus_jaculus
ENSORLG00015010165	upf1	100	97.731	ENSKMAG00000004962	upf1	100	97.731	Kryptolebias_marmoratus
ENSORLG00015010165	upf1	100	97.552	ENSLBEG00000027848	-	100	97.552	Labrus_bergylta
ENSORLG00015010165	upf1	100	90.779	ENSLBEG00000014862	upf1	100	91.943	Labrus_bergylta
ENSORLG00015010165	upf1	65	94.737	ENSLACG00000008482	UPF1	100	94.986	Latimeria_chalumnae
ENSORLG00015010165	upf1	100	95.463	ENSLOCG00000002072	upf1	100	95.463	Lepisosteus_oculatus
ENSORLG00015010165	upf1	100	91.158	ENSLAFG00000014963	UPF1	100	91.158	Loxodonta_africana
ENSORLG00015010165	upf1	100	92.000	ENSMFAG00000037748	UPF1	100	92.000	Macaca_fascicularis
ENSORLG00015010165	upf1	100	91.755	ENSMMUG00000023286	UPF1	100	91.755	Macaca_mulatta
ENSORLG00015010165	upf1	100	92.000	ENSMNEG00000000046	UPF1	100	92.000	Macaca_nemestrina
ENSORLG00015010165	upf1	100	89.692	ENSMLEG00000028404	UPF1	99	93.542	Mandrillus_leucophaeus
ENSORLG00015010165	upf1	100	97.643	ENSMAMG00000006231	-	100	97.643	Mastacembelus_armatus
ENSORLG00015010165	upf1	100	91.421	ENSMAMG00000006229	upf1	100	92.493	Mastacembelus_armatus
ENSORLG00015010165	upf1	100	97.280	ENSMZEG00005016386	-	100	97.280	Maylandia_zebra
ENSORLG00015010165	upf1	100	91.652	ENSMZEG00005003489	upf1	100	92.460	Maylandia_zebra
ENSORLG00015010165	upf1	100	89.317	ENSMGAG00000004745	UPF1	100	93.169	Meleagris_gallopavo
ENSORLG00015010165	upf1	100	89.210	ENSMAUG00000011398	Upf1	95	93.067	Mesocricetus_auratus
ENSORLG00015010165	upf1	100	92.157	ENSMICG00000001659	UPF1	100	92.157	Microcebus_murinus
ENSORLG00015010165	upf1	100	91.312	ENSMOCG00000005699	Upf1	100	91.401	Microtus_ochrogaster
ENSORLG00015010165	upf1	100	91.387	ENSMMOG00000007881	upf1	100	91.938	Mola_mola
ENSORLG00015010165	upf1	100	90.847	ENSMMOG00000007537	-	99	95.502	Mola_mola
ENSORLG00015010165	upf1	100	91.109	ENSMODG00000003689	UPF1	100	91.197	Monodelphis_domestica
ENSORLG00015010165	upf1	100	91.470	ENSMALG00000000144	upf1	100	91.924	Monopterus_albus
ENSORLG00015010165	upf1	100	96.112	ENSMALG00000018100	-	100	96.112	Monopterus_albus
ENSORLG00015010165	upf1	100	92.122	MGP_CAROLIEiJ_G0031142	Upf1	100	92.122	Mus_caroli
ENSORLG00015010165	upf1	100	92.122	ENSMUSG00000058301	Upf1	100	92.122	Mus_musculus
ENSORLG00015010165	upf1	100	92.122	MGP_PahariEiJ_G0021607	Upf1	100	92.122	Mus_pahari
ENSORLG00015010165	upf1	100	92.122	MGP_SPRETEiJ_G0032260	Upf1	100	92.122	Mus_spretus
ENSORLG00015010165	upf1	100	92.513	ENSMPUG00000015516	UPF1	100	92.513	Mustela_putorius_furo
ENSORLG00015010165	upf1	99	92.308	ENSMLUG00000012122	UPF1	99	92.308	Myotis_lucifugus
ENSORLG00015010165	upf1	100	90.805	ENSNGAG00000024107	Upf1	100	90.805	Nannospalax_galili
ENSORLG00015010165	upf1	100	90.851	ENSNBRG00000000670	upf1	100	91.049	Neolamprologus_brichardi
ENSORLG00015010165	upf1	100	93.706	ENSNBRG00000022069	-	100	96.505	Neolamprologus_brichardi
ENSORLG00015010165	upf1	100	83.815	ENSNLEG00000006062	UPF1	99	87.749	Nomascus_leucogenys
ENSORLG00015010165	upf1	84	88.867	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSORLG00015010165	upf1	100	83.155	ENSOPRG00000014018	UPF1	99	87.236	Ochotona_princeps
ENSORLG00015010165	upf1	100	92.453	ENSODEG00000012426	UPF1	100	92.633	Octodon_degus
ENSORLG00015010165	upf1	100	97.189	ENSONIG00000012729	-	100	97.189	Oreochromis_niloticus
ENSORLG00015010165	upf1	100	91.831	ENSONIG00000010452	upf1	100	92.639	Oreochromis_niloticus
ENSORLG00015010165	upf1	100	91.689	ENSOANG00000004568	UPF1	100	91.689	Ornithorhynchus_anatinus
ENSORLG00015010165	upf1	100	99.909	ENSORLG00000008453	upf1	100	99.909	Oryzias_latipes
ENSORLG00015010165	upf1	100	100.000	ENSORLG00020014758	upf1	100	100.000	Oryzias_latipes_hni
ENSORLG00015010165	upf1	100	99.274	ENSOMEG00000003665	upf1	100	99.274	Oryzias_melastigma
ENSORLG00015010165	upf1	100	92.335	ENSOGAG00000012866	UPF1	100	92.335	Otolemur_garnettii
ENSORLG00015010165	upf1	96	90.809	ENSOARG00000010739	UPF1	100	90.809	Ovis_aries
ENSORLG00015010165	upf1	100	89.692	ENSPPAG00000043884	UPF1	96	93.542	Pan_paniscus
ENSORLG00015010165	upf1	100	91.527	ENSPPRG00000023470	UPF1	100	91.527	Panthera_pardus
ENSORLG00015010165	upf1	100	88.802	ENSPTIG00000010159	UPF1	99	92.529	Panthera_tigris_altaica
ENSORLG00015010165	upf1	100	92.000	ENSPTRG00000010721	UPF1	100	92.000	Pan_troglodytes
ENSORLG00015010165	upf1	100	92.000	ENSPANG00000008847	UPF1	100	92.000	Papio_anubis
ENSORLG00015010165	upf1	93	93.665	ENSPKIG00000006069	upf1	98	93.665	Paramormyrops_kingsleyae
ENSORLG00015010165	upf1	70	93.611	ENSPSIG00000009491	UPF1	100	93.611	Pelodiscus_sinensis
ENSORLG00015010165	upf1	100	90.687	ENSPMGG00000017327	upf1	100	90.893	Periophthalmus_magnuspinnatus
ENSORLG00015010165	upf1	100	91.312	ENSPEMG00000001085	Upf1	100	91.312	Peromyscus_maniculatus_bairdii
ENSORLG00015010165	upf1	100	87.117	ENSPMAG00000001206	upf1	100	87.117	Petromyzon_marinus
ENSORLG00015010165	upf1	100	92.507	ENSPCIG00000006156	UPF1	100	92.507	Phascolarctos_cinereus
ENSORLG00015010165	upf1	100	97.368	ENSPLAG00000016232	-	100	97.368	Poecilia_latipinna
ENSORLG00015010165	upf1	100	90.575	ENSPLAG00000018155	-	100	90.575	Poecilia_latipinna
ENSORLG00015010165	upf1	100	97.280	ENSPMEG00000016319	-	100	97.280	Poecilia_mexicana
ENSORLG00015010165	upf1	100	91.139	ENSPMEG00000011443	-	100	91.139	Poecilia_mexicana
ENSORLG00015010165	upf1	100	97.278	ENSPREG00000011247	-	100	97.278	Poecilia_reticulata
ENSORLG00015010165	upf1	100	90.852	ENSPREG00000009940	upf1	100	90.852	Poecilia_reticulata
ENSORLG00015010165	upf1	100	86.584	ENSPPYG00000009752	UPF1	97	91.351	Pongo_abelii
ENSORLG00015010165	upf1	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSORLG00015010165	upf1	100	91.837	ENSPCOG00000023813	UPF1	100	91.925	Propithecus_coquereli
ENSORLG00015010165	upf1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSORLG00015010165	upf1	100	91.652	ENSPNYG00000003694	upf1	100	92.460	Pundamilia_nyererei
ENSORLG00015010165	upf1	100	97.280	ENSPNYG00000016731	-	100	97.280	Pundamilia_nyererei
ENSORLG00015010165	upf1	100	94.203	ENSPNAG00000025614	upf1	100	94.384	Pygocentrus_nattereri
ENSORLG00015010165	upf1	100	92.122	ENSRNOG00000020134	Upf1	100	92.122	Rattus_norvegicus
ENSORLG00015010165	upf1	100	87.283	ENSRBIG00000013894	UPF1	98	94.754	Rhinopithecus_bieti
ENSORLG00015010165	upf1	100	89.692	ENSRROG00000040935	UPF1	98	94.754	Rhinopithecus_roxellana
ENSORLG00015010165	upf1	78	54.279	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSORLG00015010165	upf1	100	89.692	ENSSBOG00000023632	UPF1	96	93.798	Saimiri_boliviensis_boliviensis
ENSORLG00015010165	upf1	100	89.423	ENSSHAG00000010499	UPF1	100	93.365	Sarcophilus_harrisii
ENSORLG00015010165	upf1	100	95.467	ENSSFOG00015021095	upf1	100	95.467	Scleropages_formosus
ENSORLG00015010165	upf1	100	97.824	ENSSMAG00000021018	-	100	97.824	Scophthalmus_maximus
ENSORLG00015010165	upf1	100	90.617	ENSSMAG00000005055	upf1	100	91.764	Scophthalmus_maximus
ENSORLG00015010165	upf1	100	91.063	ENSSDUG00000013320	upf1	100	92.404	Seriola_dumerili
ENSORLG00015010165	upf1	100	97.915	ENSSDUG00000009629	-	100	97.915	Seriola_dumerili
ENSORLG00015010165	upf1	100	91.885	ENSSLDG00000020868	upf1	100	92.619	Seriola_lalandi_dorsalis
ENSORLG00015010165	upf1	100	97.915	ENSSLDG00000006878	-	100	97.915	Seriola_lalandi_dorsalis
ENSORLG00015010165	upf1	100	92.806	ENSSPUG00000010538	UPF1	100	93.172	Sphenodon_punctatus
ENSORLG00015010165	upf1	100	97.822	ENSSPAG00000011521	-	100	97.822	Stegastes_partitus
ENSORLG00015010165	upf1	100	90.407	ENSSPAG00000000003	upf1	100	90.588	Stegastes_partitus
ENSORLG00015010165	upf1	100	92.672	ENSSSCG00000039301	UPF1	99	94.540	Sus_scrofa
ENSORLG00015010165	upf1	82	86.489	ENSTGUG00000001057	UPF1	100	91.137	Taeniopygia_guttata
ENSORLG00015010165	upf1	100	91.568	ENSTRUG00000000150	upf1	100	91.840	Takifugu_rubripes
ENSORLG00015010165	upf1	100	96.189	ENSTRUG00000005131	-	100	96.189	Takifugu_rubripes
ENSORLG00015010165	upf1	100	88.919	ENSTTRG00000011544	UPF1	100	88.919	Tursiops_truncatus
ENSORLG00015010165	upf1	100	92.424	ENSUAMG00000007093	UPF1	100	92.424	Ursus_americanus
ENSORLG00015010165	upf1	100	90.847	ENSUMAG00000006652	UPF1	100	94.365	Ursus_maritimus
ENSORLG00015010165	upf1	100	92.513	ENSVVUG00000007797	UPF1	100	92.513	Vulpes_vulpes
ENSORLG00015010165	upf1	100	79.559	ENSXETG00000013602	upf1	100	79.559	Xenopus_tropicalis
ENSORLG00015010165	upf1	100	93.281	ENSXCOG00000005764	-	100	97.578	Xiphophorus_couchianus
ENSORLG00015010165	upf1	97	90.892	ENSXCOG00000015275	-	96	90.892	Xiphophorus_couchianus
ENSORLG00015010165	upf1	100	91.107	ENSXMAG00000001703	-	100	91.107	Xiphophorus_maculatus
ENSORLG00015010165	upf1	100	97.099	ENSXMAG00000002540	-	100	97.099	Xiphophorus_maculatus