EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015010557 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 10344 bases
Position: chr1:22640642-22650985
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015009761	PPR	PF01535.20	5.1e-19	1	2
ENSORLP00015009761	PPR	PF01535.20	5.1e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015016157	-	4621	-	ENSORLP00015009761	673 (aa)	-	-

Gene Model

Click here to download ENSORLG00015010557's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015010557's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015010557	ptcd1	85	47.430	ENSG00000248919	ATP5MF-PTCD1	79	47.360	Homo_sapiens
ENSORLG00015010557	ptcd1	85	47.430	ENSG00000106246	PTCD1	85	47.360	Homo_sapiens
ENSORLG00015010557	ptcd1	91	63.898	ENSAPOG00000010679	ptcd1	96	63.898	Acanthochromis_polyacanthus
ENSORLG00015010557	ptcd1	85	48.179	ENSAMEG00000006224	-	79	48.179	Ailuropoda_melanoleuca
ENSORLG00015010557	ptcd1	95	69.242	ENSACIG00000017861	ptcd1	97	69.242	Amphilophus_citrinellus
ENSORLG00015010557	ptcd1	99	63.411	ENSAOCG00000020741	-	97	63.411	Amphiprion_ocellaris
ENSORLG00015010557	ptcd1	91	64.013	ENSAOCG00000022617	ptcd1	94	64.013	Amphiprion_ocellaris
ENSORLG00015010557	ptcd1	99	63.703	ENSAPEG00000022632	ptcd1	97	63.703	Amphiprion_percula
ENSORLG00015010557	ptcd1	99	64.338	ENSATEG00000007016	ptcd1	96	64.680	Anabas_testudineus
ENSORLG00015010557	ptcd1	82	49.570	ENSAPLG00000006862	-	90	49.570	Anas_platyrhynchos
ENSORLG00015010557	ptcd1	84	48.644	ENSACAG00000012871	-	78	48.644	Anolis_carolinensis
ENSORLG00015010557	ptcd1	85	46.656	ENSANAG00000035790	-	88	46.591	Aotus_nancymaae
ENSORLG00015010557	ptcd1	99	68.175	ENSACLG00000002824	ptcd1	96	68.175	Astatotilapia_calliptera
ENSORLG00015010557	ptcd1	89	49.235	ENSAMXG00000037292	ptcd1	91	49.235	Astyanax_mexicanus
ENSORLG00015010557	ptcd1	88	46.614	ENSBTAG00000020440	-	77	47.087	Bos_taurus
ENSORLG00015010557	ptcd1	85	47.533	ENSCJAG00000015815	-	85	47.463	Callithrix_jacchus
ENSORLG00015010557	ptcd1	86	47.326	ENSCAFG00000015055	-	80	47.326	Canis_familiaris
ENSORLG00015010557	ptcd1	86	47.403	ENSCAFG00020014480	-	80	47.403	Canis_lupus_dingo
ENSORLG00015010557	ptcd1	88	47.030	ENSCHIG00000027000	-	88	47.191	Capra_hircus
ENSORLG00015010557	ptcd1	85	46.040	ENSTSYG00000029495	-	85	46.305	Carlito_syrichta
ENSORLG00015010557	ptcd1	84	47.138	ENSCAPG00000014660	-	92	46.493	Cavia_aperea
ENSORLG00015010557	ptcd1	84	47.980	ENSCPOG00000001780	-	86	47.308	Cavia_porcellus
ENSORLG00015010557	ptcd1	85	47.862	ENSCCAG00000034025	-	85	47.791	Cebus_capucinus
ENSORLG00015010557	ptcd1	85	48.495	ENSCATG00000040859	-	85	48.419	Cercocebus_atys
ENSORLG00015010557	ptcd1	86	48.136	ENSCLAG00000006354	-	86	48.136	Chinchilla_lanigera
ENSORLG00015010557	ptcd1	79	47.928	ENSCSAG00000017794	-	82	48.479	Chlorocebus_sabaeus
ENSORLG00015010557	ptcd1	86	46.929	ENSCPBG00000020866	-	86	46.929	Chrysemys_picta_bellii
ENSORLG00015010557	ptcd1	86	48.173	ENSCANG00000023441	-	86	48.339	Colobus_angolensis_palliatus
ENSORLG00015010557	ptcd1	87	48.033	ENSCGRG00001023686	Ptcd1	86	48.276	Cricetulus_griseus_chok1gshd
ENSORLG00015010557	ptcd1	87	48.033	ENSCGRG00000015031	Ptcd1	86	48.276	Cricetulus_griseus_crigri
ENSORLG00015010557	ptcd1	97	59.880	ENSCSEG00000002378	ptcd1	93	60.030	Cynoglossus_semilaevis
ENSORLG00015010557	ptcd1	95	69.267	ENSCVAG00000003621	ptcd1	98	68.944	Cyprinodon_variegatus
ENSORLG00015010557	ptcd1	97	69.419	ENSCVAG00000015826	ptcd1	93	69.419	Cyprinodon_variegatus
ENSORLG00015010557	ptcd1	90	50.472	ENSDARG00000076176	ptcd1	90	50.472	Danio_rerio
ENSORLG00015010557	ptcd1	87	46.732	ENSDNOG00000009957	-	88	46.463	Dasypus_novemcinctus
ENSORLG00015010557	ptcd1	91	45.427	ENSDORG00000000740	Ptcd1	94	45.427	Dipodomys_ordii
ENSORLG00015010557	ptcd1	84	38.318	ENSEBUG00000014515	ptcd1	93	37.702	Eptatretus_burgeri
ENSORLG00015010557	ptcd1	87	46.880	ENSEASG00005002480	-	87	47.343	Equus_asinus_asinus
ENSORLG00015010557	ptcd1	87	47.368	ENSECAG00000016617	-	87	47.833	Equus_caballus
ENSORLG00015010557	ptcd1	84	57.331	ENSELUG00000016517	ptcd1	82	57.331	Esox_lucius
ENSORLG00015010557	ptcd1	89	47.152	ENSFCAG00000015069	-	89	47.152	Felis_catus
ENSORLG00015010557	ptcd1	94	45.833	ENSFALG00000013803	-	93	46.006	Ficedula_albicollis
ENSORLG00015010557	ptcd1	83	48.223	ENSFDAG00000006393	-	83	48.067	Fukomys_damarensis
ENSORLG00015010557	ptcd1	79	72.948	ENSFHEG00000012491	ptcd1	93	72.948	Fundulus_heteroclitus
ENSORLG00015010557	ptcd1	86	62.925	ENSGMOG00000007639	ptcd1	94	62.925	Gadus_morhua
ENSORLG00015010557	ptcd1	82	48.311	ENSGALG00000004711	-	83	48.735	Gallus_gallus
ENSORLG00015010557	ptcd1	95	67.692	ENSGAFG00000013175	ptcd1	96	66.127	Gambusia_affinis
ENSORLG00015010557	ptcd1	87	68.781	ENSGACG00000016607	ptcd1	93	68.781	Gasterosteus_aculeatus
ENSORLG00015010557	ptcd1	90	44.006	ENSGAGG00000021832	-	99	44.109	Gopherus_agassizii
ENSORLG00015010557	ptcd1	85	46.809	ENSGGOG00000015123	-	86	46.743	Gorilla_gorilla
ENSORLG00015010557	ptcd1	99	68.175	ENSHBUG00000018275	ptcd1	96	68.175	Haplochromis_burtoni
ENSORLG00015010557	ptcd1	87	48.226	ENSHGLG00000017621	-	87	48.226	Heterocephalus_glaber_female
ENSORLG00015010557	ptcd1	87	48.226	ENSHGLG00100007218	-	87	48.226	Heterocephalus_glaber_male
ENSORLG00015010557	ptcd1	96	55.825	ENSHCOG00000010784	ptcd1	94	56.430	Hippocampus_comes
ENSORLG00015010557	ptcd1	90	47.134	ENSSTOG00000001682	-	89	47.293	Ictidomys_tridecemlineatus
ENSORLG00015010557	ptcd1	86	47.869	ENSJJAG00000000319	Ptcd1	88	47.876	Jaculus_jaculus
ENSORLG00015010557	ptcd1	98	64.464	ENSKMAG00000008708	ptcd1	95	64.593	Kryptolebias_marmoratus
ENSORLG00015010557	ptcd1	99	61.735	ENSLBEG00000008061	ptcd1	97	61.735	Labrus_bergylta
ENSORLG00015010557	ptcd1	86	48.500	ENSLACG00000011172	ptcd1	84	48.500	Latimeria_chalumnae
ENSORLG00015010557	ptcd1	89	50.153	ENSLOCG00000004833	ptcd1	96	50.000	Lepisosteus_oculatus
ENSORLG00015010557	ptcd1	86	47.222	ENSLAFG00000002588	-	86	47.222	Loxodonta_africana
ENSORLG00015010557	ptcd1	85	48.495	ENSMFAG00000041324	-	85	48.419	Macaca_fascicularis
ENSORLG00015010557	ptcd1	85	48.328	ENSMMUG00000030408	-	85	48.253	Macaca_mulatta
ENSORLG00015010557	ptcd1	85	48.495	ENSMNEG00000043786	-	85	48.419	Macaca_nemestrina
ENSORLG00015010557	ptcd1	85	35.993	ENSMLEG00000031179	-	83	37.331	Mandrillus_leucophaeus
ENSORLG00015010557	ptcd1	99	64.181	ENSMAMG00000007623	ptcd1	95	64.181	Mastacembelus_armatus
ENSORLG00015010557	ptcd1	99	68.175	ENSMZEG00005012722	ptcd1	96	68.175	Maylandia_zebra
ENSORLG00015010557	ptcd1	86	47.343	ENSMGAG00000004211	-	81	47.343	Meleagris_gallopavo
ENSORLG00015010557	ptcd1	85	45.183	ENSMICG00000017428	-	85	45.050	Microcebus_murinus
ENSORLG00015010557	ptcd1	97	64.714	ENSMMOG00000020243	ptcd1	94	68.586	Mola_mola
ENSORLG00015010557	ptcd1	89	44.811	ENSMODG00000001350	-	85	44.811	Monodelphis_domestica
ENSORLG00015010557	ptcd1	91	67.409	ENSMALG00000018442	ptcd1	87	67.409	Monopterus_albus
ENSORLG00015010557	ptcd1	87	47.334	MGP_CAROLIEiJ_G0028011	Ptcd1	88	47.334	Mus_caroli
ENSORLG00015010557	ptcd1	87	46.895	ENSMUSG00000029624	Ptcd1	88	46.850	Mus_musculus
ENSORLG00015010557	ptcd1	88	47.368	MGP_PahariEiJ_G0024580	Ptcd1	89	47.604	Mus_pahari
ENSORLG00015010557	ptcd1	87	47.145	MGP_SPRETEiJ_G0029012	Ptcd1	88	47.097	Mus_spretus
ENSORLG00015010557	ptcd1	85	47.876	ENSMPUG00000016518	-	88	47.847	Mustela_putorius_furo
ENSORLG00015010557	ptcd1	88	48.071	ENSMLUG00000010994	-	82	48.480	Myotis_lucifugus
ENSORLG00015010557	ptcd1	99	65.015	ENSNBRG00000010079	ptcd1	96	67.825	Neolamprologus_brichardi
ENSORLG00015010557	ptcd1	74	47.932	ENSNLEG00000011060	-	88	47.932	Nomascus_leucogenys
ENSORLG00015010557	ptcd1	87	45.645	ENSMEUG00000006930	-	87	45.645	Notamacropus_eugenii
ENSORLG00015010557	ptcd1	76	52.174	ENSOPRG00000013647	-	76	57.522	Ochotona_princeps
ENSORLG00015010557	ptcd1	87	67.780	ENSONIG00000003168	ptcd1	99	67.780	Oreochromis_niloticus
ENSORLG00015010557	ptcd1	81	45.719	ENSOANG00000007728	-	75	45.719	Ornithorhynchus_anatinus
ENSORLG00015010557	ptcd1	83	48.722	ENSOCUG00000010584	-	82	48.562	Oryctolagus_cuniculus
ENSORLG00015010557	ptcd1	100	97.774	ENSORLG00000009275	ptcd1	100	97.774	Oryzias_latipes
ENSORLG00015010557	ptcd1	100	97.920	ENSORLG00020000988	ptcd1	100	97.920	Oryzias_latipes_hni
ENSORLG00015010557	ptcd1	99	84.708	ENSOMEG00000020627	ptcd1	99	84.708	Oryzias_melastigma
ENSORLG00015010557	ptcd1	85	46.305	ENSOGAG00000010877	-	86	46.721	Otolemur_garnettii
ENSORLG00015010557	ptcd1	88	43.910	ENSOARG00000018676	-	89	44.071	Ovis_aries
ENSORLG00015010557	ptcd1	85	47.264	ENSPPAG00000036024	-	85	47.351	Pan_paniscus
ENSORLG00015010557	ptcd1	89	47.161	ENSPPRG00000003478	-	90	47.161	Panthera_pardus
ENSORLG00015010557	ptcd1	85	47.430	ENSPTRG00000019452	-	85	47.517	Pan_troglodytes
ENSORLG00015010557	ptcd1	85	48.662	ENSPANG00000016730	-	85	48.586	Papio_anubis
ENSORLG00015010557	ptcd1	83	52.340	ENSPKIG00000014215	ptcd1	84	52.768	Paramormyrops_kingsleyae
ENSORLG00015010557	ptcd1	83	46.610	ENSPSIG00000011184	-	98	47.119	Pelodiscus_sinensis
ENSORLG00015010557	ptcd1	74	41.109	ENSPMAG00000009667	ptcd1	100	41.109	Petromyzon_marinus
ENSORLG00015010557	ptcd1	89	45.369	ENSPCIG00000024778	-	85	45.369	Phascolarctos_cinereus
ENSORLG00015010557	ptcd1	98	65.198	ENSPFOG00000004458	ptcd1	96	65.932	Poecilia_formosa
ENSORLG00015010557	ptcd1	94	66.769	ENSPLAG00000011051	ptcd1	96	66.322	Poecilia_latipinna
ENSORLG00015010557	ptcd1	98	66.224	ENSPMEG00000020547	ptcd1	96	66.224	Poecilia_mexicana
ENSORLG00015010557	ptcd1	99	64.317	ENSPREG00000000059	ptcd1	97	64.317	Poecilia_reticulata
ENSORLG00015010557	ptcd1	86	46.743	ENSPPYG00000017377	-	91	46.743	Pongo_abelii
ENSORLG00015010557	ptcd1	77	51.852	ENSPCAG00000001852	-	84	51.852	Procavia_capensis
ENSORLG00015010557	ptcd1	85	46.787	ENSPCOG00000018596	-	88	46.314	Propithecus_coquereli
ENSORLG00015010557	ptcd1	99	67.737	ENSPNYG00000019993	ptcd1	96	67.737	Pundamilia_nyererei
ENSORLG00015010557	ptcd1	85	52.254	ENSPNAG00000014931	ptcd1	89	51.360	Pygocentrus_nattereri
ENSORLG00015010557	ptcd1	84	48.316	ENSRNOG00000000987	Ptcd1	85	48.490	Rattus_norvegicus
ENSORLG00015010557	ptcd1	86	48.505	ENSRBIG00000043393	-	86	48.671	Rhinopithecus_bieti
ENSORLG00015010557	ptcd1	86	48.505	ENSRROG00000036420	-	86	48.671	Rhinopithecus_roxellana
ENSORLG00015010557	ptcd1	85	48.419	ENSSBOG00000024114	-	85	48.259	Saimiri_boliviensis_boliviensis
ENSORLG00015010557	ptcd1	88	45.972	ENSSHAG00000011376	-	88	47.885	Sarcophilus_harrisii
ENSORLG00015010557	ptcd1	89	50.315	ENSSFOG00015007909	ptcd1	86	50.315	Scleropages_formosus
ENSORLG00015010557	ptcd1	87	65.333	ENSSMAG00000000218	ptcd1	95	65.333	Scophthalmus_maximus
ENSORLG00015010557	ptcd1	96	67.113	ENSSDUG00000015671	ptcd1	97	67.113	Seriola_dumerili
ENSORLG00015010557	ptcd1	96	66.168	ENSSLDG00000014261	ptcd1	96	66.168	Seriola_lalandi_dorsalis
ENSORLG00015010557	ptcd1	82	47.236	ENSSPUG00000003540	-	80	47.236	Sphenodon_punctatus
ENSORLG00015010557	ptcd1	98	65.116	ENSSPAG00000011049	ptcd1	95	65.407	Stegastes_partitus
ENSORLG00015010557	ptcd1	88	48.243	ENSSSCG00000007622	-	93	48.166	Sus_scrofa
ENSORLG00015010557	ptcd1	82	48.700	ENSTGUG00000007563	-	94	48.625	Taeniopygia_guttata
ENSORLG00015010557	ptcd1	92	65.835	ENSTRUG00000013471	ptcd1	88	65.630	Takifugu_rubripes
ENSORLG00015010557	ptcd1	87	67.114	ENSTNIG00000008271	ptcd1	87	67.114	Tetraodon_nigroviridis
ENSORLG00015010557	ptcd1	85	46.078	ENSTBEG00000011021	-	86	46.078	Tupaia_belangeri
ENSORLG00015010557	ptcd1	88	46.463	ENSTTRG00000003006	-	89	46.463	Tursiops_truncatus
ENSORLG00015010557	ptcd1	88	46.203	ENSUAMG00000008049	-	88	46.203	Ursus_americanus
ENSORLG00015010557	ptcd1	85	47.776	ENSVVUG00000008836	-	85	47.776	Vulpes_vulpes
ENSORLG00015010557	ptcd1	86	45.861	ENSXETG00000009891	ptcd1	86	45.861	Xenopus_tropicalis
ENSORLG00015010557	ptcd1	95	68.062	ENSXMAG00000015540	ptcd1	96	66.519	Xiphophorus_maculatus