EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015010989 (Gene tree)
Gene ID: -
Gene Symbol: sf3b4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 4212 bases
Position: chr11:22834548-22838759
Accession: 101159759
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015028376	RRM_1	PF00076.22	3.1e-39	1	2
ENSORLP00015028376	RRM_1	PF00076.22	3.1e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015016658	-	1467	XM_023959648	ENSORLP00015028376	399 (aa)	XP_023815416	-

Gene Model

Click here to download ENSORLG00015010989's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015010989's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015010989	sf3b4	62	38.372	ENSORLG00015020886	-	88	34.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015010989	sf3b4	57	97.807	ENSG00000143368	SF3B4	99	96.296	Homo_sapiens
ENSORLG00015010989	sf3b4	58	98.696	ENSAPOG00000017647	sf3b4	75	91.030	Acanthochromis_polyacanthus
ENSORLG00015010989	sf3b4	61	82.624	ENSACIG00000018455	sf3b4	68	97.845	Amphilophus_citrinellus
ENSORLG00015010989	sf3b4	57	99.558	ENSAOCG00000019801	sf3b4	75	91.030	Amphiprion_ocellaris
ENSORLG00015010989	sf3b4	57	99.558	ENSAPEG00000010365	sf3b4	75	91.030	Amphiprion_percula
ENSORLG00015010989	sf3b4	58	98.261	ENSATEG00000012844	sf3b4	74	85.762	Anabas_testudineus
ENSORLG00015010989	sf3b4	54	100.000	ENSACAG00000010019	SF3B4	56	98.276	Anolis_carolinensis
ENSORLG00015010989	sf3b4	59	98.312	ENSACLG00000014260	sf3b4	74	91.030	Astatotilapia_calliptera
ENSORLG00015010989	sf3b4	58	98.696	ENSAMXG00000008282	sf3b4	58	97.845	Astyanax_mexicanus
ENSORLG00015010989	sf3b4	51	96.040	ENSBTAG00000012793	-	51	95.146	Bos_taurus
ENSORLG00015010989	sf3b4	77	59.804	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSORLG00015010989	sf3b4	75	71.273	ENSCAPG00000006451	SF3B4	50	96.045	Cavia_aperea
ENSORLG00015010989	sf3b4	57	96.930	ENSCCAG00000021751	-	52	96.121	Cebus_capucinus
ENSORLG00015010989	sf3b4	75	70.219	ENSCCAG00000019823	-	50	87.560	Cebus_capucinus
ENSORLG00015010989	sf3b4	54	100.000	ENSCPBG00000008041	SF3B4	56	97.845	Chrysemys_picta_bellii
ENSORLG00015010989	sf3b4	56	88.393	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSORLG00015010989	sf3b4	52	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSORLG00015010989	sf3b4	75	94.314	ENSCSEG00000015258	sf3b4	66	94.654	Cynoglossus_semilaevis
ENSORLG00015010989	sf3b4	67	88.519	ENSCVAG00000005536	sf3b4	76	87.375	Cyprinodon_variegatus
ENSORLG00015010989	sf3b4	58	98.696	ENSDARG00000018574	sf3b4	58	98.276	Danio_rerio
ENSORLG00015010989	sf3b4	97	60.145	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSORLG00015010989	sf3b4	58	99.130	ENSELUG00000012876	sf3b4	74	91.060	Esox_lucius
ENSORLG00015010989	sf3b4	58	97.826	ENSGMOG00000002519	sf3b4	68	97.414	Gadus_morhua
ENSORLG00015010989	sf3b4	54	100.000	ENSGALG00000013352	SF3B4	56	97.845	Gallus_gallus
ENSORLG00015010989	sf3b4	67	93.309	ENSGAFG00000010181	sf3b4	76	89.369	Gambusia_affinis
ENSORLG00015010989	sf3b4	57	99.558	ENSGACG00000003819	sf3b4	74	83.388	Gasterosteus_aculeatus
ENSORLG00015010989	sf3b4	77	72.026	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSORLG00015010989	sf3b4	59	98.312	ENSHBUG00000002028	sf3b4	74	91.030	Haplochromis_burtoni
ENSORLG00015010989	sf3b4	57	97.807	ENSHGLG00100008533	SF3B4	55	96.983	Heterocephalus_glaber_male
ENSORLG00015010989	sf3b4	57	97.357	ENSHCOG00000003014	sf3b4	58	96.567	Hippocampus_comes
ENSORLG00015010989	sf3b4	58	98.696	ENSIPUG00000012242	Sf3b4	75	89.109	Ictalurus_punctatus
ENSORLG00015010989	sf3b4	56	70.588	ENSJJAG00000022500	Sf3b4	56	70.504	Jaculus_jaculus
ENSORLG00015010989	sf3b4	59	98.312	ENSKMAG00000008154	sf3b4	76	88.704	Kryptolebias_marmoratus
ENSORLG00015010989	sf3b4	58	98.707	ENSLBEG00000026818	sf3b4	74	89.000	Labrus_bergylta
ENSORLG00015010989	sf3b4	57	97.368	ENSLACG00000004436	SF3B4	64	96.121	Latimeria_chalumnae
ENSORLG00015010989	sf3b4	58	98.276	ENSLOCG00000009048	sf3b4	55	98.276	Lepisosteus_oculatus
ENSORLG00015010989	sf3b4	89	62.604	ENSMFAG00000039067	-	59	78.539	Macaca_fascicularis
ENSORLG00015010989	sf3b4	89	62.050	ENSMNEG00000031526	-	59	78.082	Macaca_nemestrina
ENSORLG00015010989	sf3b4	59	97.890	ENSMAMG00000014692	sf3b4	75	89.735	Mastacembelus_armatus
ENSORLG00015010989	sf3b4	59	98.312	ENSMZEG00005026741	sf3b4	74	91.030	Maylandia_zebra
ENSORLG00015010989	sf3b4	54	100.000	ENSMGAG00000000653	SF3B4	56	97.845	Meleagris_gallopavo
ENSORLG00015010989	sf3b4	58	98.696	ENSMMOG00000018032	sf3b4	59	98.707	Mola_mola
ENSORLG00015010989	sf3b4	57	97.807	ENSMODG00000018767	SF3B4	55	96.983	Monodelphis_domestica
ENSORLG00015010989	sf3b4	57	99.115	ENSMALG00000006174	sf3b4	74	88.411	Monopterus_albus
ENSORLG00015010989	sf3b4	59	98.734	ENSNBRG00000013865	sf3b4	74	91.362	Neolamprologus_brichardi
ENSORLG00015010989	sf3b4	99	49.425	ENSNLEG00000009693	-	99	49.425	Nomascus_leucogenys
ENSORLG00015010989	sf3b4	90	67.639	ENSNLEG00000000537	-	59	87.500	Nomascus_leucogenys
ENSORLG00015010989	sf3b4	89	58.378	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSORLG00015010989	sf3b4	57	80.786	ENSODEG00000003597	-	57	80.258	Octodon_degus
ENSORLG00015010989	sf3b4	59	97.890	ENSONIG00000002730	sf3b4	74	90.698	Oreochromis_niloticus
ENSORLG00015010989	sf3b4	66	72.491	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSORLG00015010989	sf3b4	100	99.749	ENSORLG00000003062	sf3b4	100	99.749	Oryzias_latipes
ENSORLG00015010989	sf3b4	100	99.749	ENSORLG00020000687	sf3b4	100	99.749	Oryzias_latipes_hni
ENSORLG00015010989	sf3b4	100	96.000	ENSOMEG00000013694	sf3b4	100	96.000	Oryzias_melastigma
ENSORLG00015010989	sf3b4	76	70.199	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSORLG00015010989	sf3b4	77	73.585	ENSPPAG00000030024	-	57	86.638	Pan_paniscus
ENSORLG00015010989	sf3b4	77	75.563	ENSPTRG00000049727	-	58	87.069	Pan_troglodytes
ENSORLG00015010989	sf3b4	58	98.707	ENSPKIG00000020669	sf3b4	62	98.707	Paramormyrops_kingsleyae
ENSORLG00015010989	sf3b4	90	72.208	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSORLG00015010989	sf3b4	57	97.807	ENSPCIG00000008765	SF3B4	55	96.983	Phascolarctos_cinereus
ENSORLG00015010989	sf3b4	68	89.706	ENSPFOG00000005754	sf3b4	76	89.369	Poecilia_formosa
ENSORLG00015010989	sf3b4	68	89.706	ENSPLAG00000001401	sf3b4	82	89.369	Poecilia_latipinna
ENSORLG00015010989	sf3b4	68	90.074	ENSPREG00000011076	sf3b4	66	93.309	Poecilia_reticulata
ENSORLG00015010989	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSORLG00015010989	sf3b4	59	98.312	ENSPNYG00000012700	sf3b4	74	91.030	Pundamilia_nyererei
ENSORLG00015010989	sf3b4	58	98.261	ENSPNAG00000000686	sf3b4	77	88.449	Pygocentrus_nattereri
ENSORLG00015010989	sf3b4	96	56.965	ENSRROG00000028213	-	57	73.661	Rhinopithecus_roxellana
ENSORLG00015010989	sf3b4	98	57.002	ENSSBOG00000025174	-	50	75.431	Saimiri_boliviensis_boliviensis
ENSORLG00015010989	sf3b4	57	92.982	ENSSHAG00000004043	SF3B4	54	92.241	Sarcophilus_harrisii
ENSORLG00015010989	sf3b4	59	97.468	ENSSFOG00015008864	sf3b4	74	90.759	Scleropages_formosus
ENSORLG00015010989	sf3b4	75	83.667	ENSSMAG00000006837	sf3b4	75	91.060	Scophthalmus_maximus
ENSORLG00015010989	sf3b4	58	99.130	ENSSDUG00000012064	sf3b4	74	91.060	Seriola_dumerili
ENSORLG00015010989	sf3b4	58	98.696	ENSSLDG00000014226	sf3b4	74	90.728	Seriola_lalandi_dorsalis
ENSORLG00015010989	sf3b4	58	98.696	ENSSPAG00000019219	sf3b4	79	90.994	Stegastes_partitus
ENSORLG00015010989	sf3b4	79	55.660	ENSSSCG00000039440	-	56	63.362	Sus_scrofa
ENSORLG00015010989	sf3b4	59	97.034	ENSTGUG00000004470	SF3B4	91	97.845	Taeniopygia_guttata
ENSORLG00015010989	sf3b4	80	88.365	ENSTRUG00000004516	sf3b4	74	90.203	Takifugu_rubripes
ENSORLG00015010989	sf3b4	73	89.726	ENSTNIG00000009156	sf3b4	75	90.541	Tetraodon_nigroviridis
ENSORLG00015010989	sf3b4	57	97.807	ENSUMAG00000003802	SF3B4	55	96.983	Ursus_maritimus
ENSORLG00015010989	sf3b4	95	68.684	ENSXETG00000011038	sf3b4	57	96.313	Xenopus_tropicalis
ENSORLG00015010989	sf3b4	68	88.603	ENSXCOG00000019895	sf3b4	76	90.033	Xiphophorus_couchianus
ENSORLG00015010989	sf3b4	57	98.690	ENSXMAG00000003772	sf3b4	76	89.701	Xiphophorus_maculatus