EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015012289 (Gene tree)
Gene ID: -
Gene Symbol: smg7
Alias: -
Full Name: SMG7 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 15922 bases
Position: chr17:12975983-12991904
Accession: ZDB-GENE-030131-9122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015029174	EST1	PF10374.9	2.3e-25	1	1
ENSORLP00015029209	EST1	PF10374.9	2.5e-25	1	1
ENSORLP00015029225	EST1	PF10374.9	2.6e-25	1	1
ENSORLP00015011296	EST1	PF10374.9	2.8e-25	1	1
ENSORLP00015029174	EST1_DNA_bind	PF10373.9	7.9e-47	1	1
ENSORLP00015029209	EST1_DNA_bind	PF10373.9	8.3e-47	1	1
ENSORLP00015011296	EST1_DNA_bind	PF10373.9	8.4e-47	1	1
ENSORLP00015029225	EST1_DNA_bind	PF10373.9	8.5e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015032152	-	3390	-	ENSORLP00015011296	1129 (aa)	-	-
ENSORLT00015018188	-	5431	-	ENSORLP00015029174	1094 (aa)	-	-
ENSORLT00015032217	-	5581	-	ENSORLP00015029225	1144 (aa)	-	-
ENSORLT00015018263	-	5521	-	ENSORLP00015029209	1124 (aa)	-	-

Gene Model

Click here to download ENSORLG00015012289's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015012289's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015012289	smg7	99	63.629	ENSG00000116698	SMG7	88	90.683	Homo_sapiens
ENSORLG00015012289	smg7	95	87.054	ENSAPOG00000009611	smg7	97	87.000	Acanthochromis_polyacanthus
ENSORLG00015012289	smg7	99	63.959	ENSAMEG00000002357	SMG7	100	62.884	Ailuropoda_melanoleuca
ENSORLG00015012289	smg7	97	79.125	ENSACIG00000015152	smg7	100	79.581	Amphilophus_citrinellus
ENSORLG00015012289	smg7	100	80.817	ENSAOCG00000013538	smg7	100	81.985	Amphiprion_ocellaris
ENSORLG00015012289	smg7	100	80.583	ENSAPEG00000007851	smg7	100	81.750	Amphiprion_percula
ENSORLG00015012289	smg7	100	81.010	ENSATEG00000006931	smg7	100	81.272	Anabas_testudineus
ENSORLG00015012289	smg7	99	62.672	ENSAPLG00000015811	SMG7	99	63.597	Anas_platyrhynchos
ENSORLG00015012289	smg7	98	68.981	ENSACAG00000014989	SMG7	99	63.465	Anolis_carolinensis
ENSORLG00015012289	smg7	97	66.170	ENSANAG00000028114	SMG7	90	87.273	Aotus_nancymaae
ENSORLG00015012289	smg7	100	80.705	ENSACLG00000022079	smg7	100	80.537	Astatotilapia_calliptera
ENSORLG00015012289	smg7	100	74.180	ENSAMXG00000020809	smg7	100	74.643	Astyanax_mexicanus
ENSORLG00015012289	smg7	99	63.543	ENSBTAG00000008003	SMG7	99	64.230	Bos_taurus
ENSORLG00015012289	smg7	99	63.488	ENSCJAG00000005135	SMG7	90	89.091	Callithrix_jacchus
ENSORLG00015012289	smg7	99	62.656	ENSCAFG00000013276	SMG7	97	64.569	Canis_familiaris
ENSORLG00015012289	smg7	99	63.681	ENSCAFG00020015475	SMG7	89	88.957	Canis_lupus_dingo
ENSORLG00015012289	smg7	100	62.469	ENSCHIG00000018192	SMG7	99	64.872	Capra_hircus
ENSORLG00015012289	smg7	99	63.629	ENSTSYG00000002667	SMG7	87	85.882	Carlito_syrichta
ENSORLG00015012289	smg7	99	62.988	ENSCPOG00000008906	SMG7	99	64.435	Cavia_porcellus
ENSORLG00015012289	smg7	99	63.676	ENSCCAG00000028596	SMG7	89	87.805	Cebus_capucinus
ENSORLG00015012289	smg7	99	63.715	ENSCATG00000011063	SMG7	89	87.805	Cercocebus_atys
ENSORLG00015012289	smg7	99	63.715	ENSCLAG00000010751	SMG7	99	64.858	Chinchilla_lanigera
ENSORLG00015012289	smg7	99	62.521	ENSCSAG00000012654	SMG7	97	64.858	Chlorocebus_sabaeus
ENSORLG00015012289	smg7	91	55.216	ENSCHOG00000010522	SMG7	81	64.417	Choloepus_hoffmanni
ENSORLG00015012289	smg7	99	64.959	ENSCPBG00000015724	SMG7	99	64.463	Chrysemys_picta_bellii
ENSORLG00015012289	smg7	99	63.589	ENSCANG00000015680	SMG7	90	87.879	Colobus_angolensis_palliatus
ENSORLG00015012289	smg7	99	63.126	ENSCGRG00001013705	Smg7	99	64.686	Cricetulus_griseus_chok1gshd
ENSORLG00015012289	smg7	99	63.053	ENSCGRG00000018401	Smg7	100	63.226	Cricetulus_griseus_crigri
ENSORLG00015012289	smg7	99	78.698	ENSCVAG00000011842	smg7	100	78.783	Cyprinodon_variegatus
ENSORLG00015012289	smg7	100	73.411	ENSDARG00000060767	smg7	100	73.706	Danio_rerio
ENSORLG00015012289	smg7	99	62.344	ENSDORG00000007331	Smg7	99	64.169	Dipodomys_ordii
ENSORLG00015012289	smg7	96	61.116	ENSETEG00000002654	SMG7	99	63.313	Echinops_telfairi
ENSORLG00015012289	smg7	99	62.843	ENSEASG00005006524	SMG7	99	64.686	Equus_asinus_asinus
ENSORLG00015012289	smg7	89	86.850	ENSECAG00000004313	SMG7	96	86.626	Equus_caballus
ENSORLG00015012289	smg7	96	61.268	ENSEEUG00000002024	SMG7	92	64.004	Erinaceus_europaeus
ENSORLG00015012289	smg7	100	74.791	ENSELUG00000010293	smg7	100	74.791	Esox_lucius
ENSORLG00015012289	smg7	99	63.394	ENSFCAG00000010900	SMG7	99	64.741	Felis_catus
ENSORLG00015012289	smg7	99	62.681	ENSFALG00000003047	SMG7	100	63.721	Ficedula_albicollis
ENSORLG00015012289	smg7	99	62.333	ENSFDAG00000012121	SMG7	99	63.861	Fukomys_damarensis
ENSORLG00015012289	smg7	100	79.808	ENSFHEG00000011073	smg7	100	79.633	Fundulus_heteroclitus
ENSORLG00015012289	smg7	86	80.226	ENSGMOG00000004916	smg7	91	80.226	Gadus_morhua
ENSORLG00015012289	smg7	99	63.072	ENSGALG00000004667	SMG7	99	63.480	Gallus_gallus
ENSORLG00015012289	smg7	100	79.772	ENSGAFG00000019000	smg7	100	79.422	Gambusia_affinis
ENSORLG00015012289	smg7	97	77.425	ENSGACG00000001634	smg7	99	77.293	Gasterosteus_aculeatus
ENSORLG00015012289	smg7	99	63.801	ENSGGOG00000002342	SMG7	86	86.826	Gorilla_gorilla
ENSORLG00015012289	smg7	100	80.872	ENSHBUG00000003726	smg7	100	80.789	Haplochromis_burtoni
ENSORLG00015012289	smg7	99	63.801	ENSHGLG00000009353	SMG7	100	64.497	Heterocephalus_glaber_female
ENSORLG00015012289	smg7	99	57.298	ENSHGLG00100004878	-	99	58.977	Heterocephalus_glaber_male
ENSORLG00015012289	smg7	99	63.715	ENSHGLG00100009637	-	99	63.972	Heterocephalus_glaber_male
ENSORLG00015012289	smg7	100	74.096	ENSIPUG00000016997	smg7	100	74.158	Ictalurus_punctatus
ENSORLG00015012289	smg7	99	62.594	ENSSTOG00000000401	SMG7	99	64.513	Ictidomys_tridecemlineatus
ENSORLG00015012289	smg7	99	62.230	ENSJJAG00000012351	Smg7	99	63.879	Jaculus_jaculus
ENSORLG00015012289	smg7	97	75.586	ENSKMAG00000004900	smg7	100	75.946	Kryptolebias_marmoratus
ENSORLG00015012289	smg7	99	79.453	ENSLBEG00000002983	smg7	99	79.718	Labrus_bergylta
ENSORLG00015012289	smg7	54	73.524	ENSLBEG00000005220	-	75	73.768	Labrus_bergylta
ENSORLG00015012289	smg7	100	65.421	ENSLACG00000000972	SMG7	100	65.930	Latimeria_chalumnae
ENSORLG00015012289	smg7	99	68.351	ENSLOCG00000002010	smg7	99	68.268	Lepisosteus_oculatus
ENSORLG00015012289	smg7	97	64.535	ENSLAFG00000008186	SMG7	99	64.206	Loxodonta_africana
ENSORLG00015012289	smg7	99	62.760	ENSMFAG00000031653	SMG7	89	87.805	Macaca_fascicularis
ENSORLG00015012289	smg7	99	62.975	ENSMMUG00000018458	SMG7	99	63.306	Macaca_mulatta
ENSORLG00015012289	smg7	99	63.715	ENSMNEG00000034798	SMG7	89	87.805	Macaca_nemestrina
ENSORLG00015012289	smg7	99	63.715	ENSMLEG00000037170	SMG7	100	63.265	Mandrillus_leucophaeus
ENSORLG00015012289	smg7	88	78.808	ENSMAMG00000018733	smg7	86	79.640	Mastacembelus_armatus
ENSORLG00015012289	smg7	100	80.956	ENSMZEG00005015247	smg7	100	80.537	Maylandia_zebra
ENSORLG00015012289	smg7	99	62.716	ENSMGAG00000001561	SMG7	99	63.502	Meleagris_gallopavo
ENSORLG00015012289	smg7	99	62.781	ENSMAUG00000019484	Smg7	99	64.599	Mesocricetus_auratus
ENSORLG00015012289	smg7	99	64.200	ENSMICG00000007145	SMG7	88	85.294	Microcebus_murinus
ENSORLG00015012289	smg7	99	62.500	ENSMOCG00000020748	Smg7	99	63.480	Microtus_ochrogaster
ENSORLG00015012289	smg7	99	76.393	ENSMMOG00000001524	smg7	99	77.011	Mola_mola
ENSORLG00015012289	smg7	91	64.011	ENSMODG00000007139	SMG7	99	64.292	Monodelphis_domestica
ENSORLG00015012289	smg7	100	81.019	ENSMALG00000000061	smg7	93	84.236	Monopterus_albus
ENSORLG00015012289	smg7	99	63.472	MGP_CAROLIEiJ_G0014704	Smg7	99	64.884	Mus_caroli
ENSORLG00015012289	smg7	99	62.931	ENSMUSG00000042772	Smg7	99	64.970	Mus_musculus
ENSORLG00015012289	smg7	99	63.103	MGP_PahariEiJ_G0027940	Smg7	99	64.858	Mus_pahari
ENSORLG00015012289	smg7	99	63.017	MGP_SPRETEiJ_G0015511	Smg7	99	65.056	Mus_spretus
ENSORLG00015012289	smg7	98	62.710	ENSMPUG00000011732	SMG7	98	63.559	Mustela_putorius_furo
ENSORLG00015012289	smg7	99	62.448	ENSMLUG00000015417	SMG7	99	64.157	Myotis_lucifugus
ENSORLG00015012289	smg7	100	63.496	ENSNGAG00000009836	Smg7	100	63.668	Nannospalax_galili
ENSORLG00015012289	smg7	98	74.245	ENSNBRG00000024343	smg7	99	73.998	Neolamprologus_brichardi
ENSORLG00015012289	smg7	99	63.801	ENSNLEG00000018018	SMG7	100	63.350	Nomascus_leucogenys
ENSORLG00015012289	smg7	74	65.143	ENSMEUG00000004681	SMG7	77	65.143	Notamacropus_eugenii
ENSORLG00015012289	smg7	96	58.384	ENSOPRG00000013942	SMG7	96	60.526	Ochotona_princeps
ENSORLG00015012289	smg7	99	63.972	ENSODEG00000010390	SMG7	99	65.116	Octodon_degus
ENSORLG00015012289	smg7	100	80.998	ENSONIG00000000277	smg7	100	80.823	Oreochromis_niloticus
ENSORLG00015012289	smg7	99	62.531	ENSOANG00000000994	SMG7	100	64.118	Ornithorhynchus_anatinus
ENSORLG00015012289	smg7	99	60.349	ENSOCUG00000005887	SMG7	92	62.597	Oryctolagus_cuniculus
ENSORLG00015012289	smg7	100	98.720	ENSORLG00000007314	smg7	100	98.720	Oryzias_latipes
ENSORLG00015012289	smg7	100	99.644	ENSORLG00020015779	smg7	100	99.644	Oryzias_latipes_hni
ENSORLG00015012289	smg7	100	95.371	ENSOMEG00000002328	smg7	100	95.197	Oryzias_melastigma
ENSORLG00015012289	smg7	96	62.199	ENSOGAG00000003107	SMG7	93	64.349	Otolemur_garnettii
ENSORLG00015012289	smg7	99	62.521	ENSOARG00000001352	SMG7	100	62.982	Ovis_aries
ENSORLG00015012289	smg7	99	63.801	ENSPPAG00000031619	SMG7	88	88.889	Pan_paniscus
ENSORLG00015012289	smg7	99	64.625	ENSPPRG00000011222	SMG7	99	64.028	Panthera_pardus
ENSORLG00015012289	smg7	96	63.823	ENSPTIG00000007242	SMG7	100	63.064	Panthera_tigris_altaica
ENSORLG00015012289	smg7	99	63.801	ENSPTRG00000001764	SMG7	89	87.805	Pan_troglodytes
ENSORLG00015012289	smg7	99	63.715	ENSPANG00000004520	SMG7	99	63.972	Papio_anubis
ENSORLG00015012289	smg7	100	69.517	ENSPKIG00000007242	smg7	100	69.687	Paramormyrops_kingsleyae
ENSORLG00015012289	smg7	99	63.409	ENSPSIG00000012201	SMG7	99	64.021	Pelodiscus_sinensis
ENSORLG00015012289	smg7	71	50.620	ENSPMGG00000021833	smg7	98	50.687	Periophthalmus_magnuspinnatus
ENSORLG00015012289	smg7	99	62.554	ENSPEMG00000011315	Smg7	99	64.402	Peromyscus_maniculatus_bairdii
ENSORLG00015012289	smg7	99	64.317	ENSPCIG00000003786	SMG7	89	91.250	Phascolarctos_cinereus
ENSORLG00015012289	smg7	100	79.950	ENSPFOG00000019219	smg7	100	79.950	Poecilia_formosa
ENSORLG00015012289	smg7	100	79.842	ENSPLAG00000001446	smg7	100	79.842	Poecilia_latipinna
ENSORLG00015012289	smg7	97	79.438	ENSPMEG00000005218	smg7	99	79.438	Poecilia_mexicana
ENSORLG00015012289	smg7	87	78.988	ENSPREG00000019039	smg7	92	79.377	Poecilia_reticulata
ENSORLG00015012289	smg7	99	63.801	ENSPPYG00000000427	SMG7	99	64.058	Pongo_abelii
ENSORLG00015012289	smg7	85	70.241	ENSPCAG00000008360	SMG7	88	70.241	Procavia_capensis
ENSORLG00015012289	smg7	99	62.934	ENSPCOG00000011996	SMG7	83	85.294	Propithecus_coquereli
ENSORLG00015012289	smg7	91	58.711	ENSPVAG00000000851	SMG7	89	60.469	Pteropus_vampyrus
ENSORLG00015012289	smg7	100	80.856	ENSPNYG00000007643	smg7	100	80.772	Pundamilia_nyererei
ENSORLG00015012289	smg7	100	73.517	ENSPNAG00000011374	smg7	100	74.062	Pygocentrus_nattereri
ENSORLG00015012289	smg7	99	63.307	ENSRNOG00000027962	Smg7	99	68.325	Rattus_norvegicus
ENSORLG00015012289	smg7	99	63.629	ENSRBIG00000036316	SMG7	100	63.180	Rhinopithecus_bieti
ENSORLG00015012289	smg7	99	63.629	ENSRROG00000035719	SMG7	99	64.686	Rhinopithecus_roxellana
ENSORLG00015012289	smg7	97	64.617	ENSSBOG00000023454	SMG7	88	90.683	Saimiri_boliviensis_boliviensis
ENSORLG00015012289	smg7	99	63.872	ENSSHAG00000013147	SMG7	99	63.817	Sarcophilus_harrisii
ENSORLG00015012289	smg7	100	70.352	ENSSFOG00015017252	smg7	100	70.938	Scleropages_formosus
ENSORLG00015012289	smg7	100	79.915	ENSSMAG00000006067	smg7	98	83.333	Scophthalmus_maximus
ENSORLG00015012289	smg7	100	81.023	ENSSDUG00000017543	smg7	100	81.976	Seriola_dumerili
ENSORLG00015012289	smg7	99	63.144	ENSSPUG00000002064	SMG7	99	62.457	Sphenodon_punctatus
ENSORLG00015012289	smg7	98	80.573	ENSSPAG00000008733	smg7	98	80.483	Stegastes_partitus
ENSORLG00015012289	smg7	99	62.760	ENSSSCG00000015558	SMG7	99	64.599	Sus_scrofa
ENSORLG00015012289	smg7	99	63.692	ENSTGUG00000003928	SMG7	100	64.069	Taeniopygia_guttata
ENSORLG00015012289	smg7	100	71.181	ENSTNIG00000002802	smg7	99	72.131	Tetraodon_nigroviridis
ENSORLG00015012289	smg7	79	66.286	ENSTBEG00000003220	SMG7	75	66.286	Tupaia_belangeri
ENSORLG00015012289	smg7	96	61.790	ENSTTRG00000014778	SMG7	93	63.523	Tursiops_truncatus
ENSORLG00015012289	smg7	96	62.152	ENSUAMG00000017473	SMG7	100	62.157	Ursus_americanus
ENSORLG00015012289	smg7	96	62.318	ENSUMAG00000016389	SMG7	100	63.830	Ursus_maritimus
ENSORLG00015012289	smg7	99	63.111	ENSVVUG00000008976	SMG7	99	64.491	Vulpes_vulpes
ENSORLG00015012289	smg7	99	59.436	ENSXETG00000012528	smg7	99	59.351	Xenopus_tropicalis
ENSORLG00015012289	smg7	100	79.298	ENSXMAG00000007123	smg7	100	79.386	Xiphophorus_maculatus