EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015012606 (Gene tree)
Gene ID: -
Gene Symbol: rbm38
Alias: -
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 22097 bases
Position: chr7:19664617-19686713
Accession: ZDB-GENE-030131-5923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015029463	RRM_1	PF00076.22	2.5e-16	1	1
ENSORLP00015011769	RRM_1	PF00076.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015018708	-	2678	-	ENSORLP00015011769	251 (aa)	-	-
ENSORLT00015032349	-	693	-	ENSORLP00015029463	230 (aa)	-	-

Gene Model

Click here to download ENSORLG00015012606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015012606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015012606	rbm38	98	57.708	ENSORLG00015017040	-	100	58.498
ENSORLG00015012606	rbm38	67	36.620	ENSORLG00015010671	dazap1	66	36.620
ENSORLG00015012606	rbm38	63	66.452	ENSORLG00015000583	rbm24b	100	53.516
ENSORLG00015012606	rbm38	54	72.093	ENSORLG00015013567	rbm24a	100	53.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015012606	rbm38	97	57.447	ENSG00000132819	RBM38	94	80.342	Homo_sapiens
ENSORLG00015012606	rbm38	100	85.259	ENSAPOG00000003301	rbm38	100	85.259	Acanthochromis_polyacanthus
ENSORLG00015012606	rbm38	98	59.127	ENSAPOG00000009939	-	100	59.127	Acanthochromis_polyacanthus
ENSORLG00015012606	rbm38	98	58.730	ENSACIG00000012502	-	100	81.197	Amphilophus_citrinellus
ENSORLG00015012606	rbm38	100	82.470	ENSACIG00000000010	rbm38	100	82.470	Amphilophus_citrinellus
ENSORLG00015012606	rbm38	96	59.426	ENSAOCG00000012559	RBM38	99	60.905	Amphiprion_ocellaris
ENSORLG00015012606	rbm38	100	85.657	ENSAOCG00000013497	-	100	85.657	Amphiprion_ocellaris
ENSORLG00015012606	rbm38	100	85.657	ENSAPEG00000013137	rbm38	100	85.657	Amphiprion_percula
ENSORLG00015012606	rbm38	98	58.730	ENSAPEG00000023581	-	100	59.684	Amphiprion_percula
ENSORLG00015012606	rbm38	98	58.333	ENSATEG00000016710	-	100	59.684	Anabas_testudineus
ENSORLG00015012606	rbm38	100	80.478	ENSATEG00000016366	rbm38	100	80.478	Anabas_testudineus
ENSORLG00015012606	rbm38	93	56.485	ENSACAG00000016238	RBM38	90	56.485	Anolis_carolinensis
ENSORLG00015012606	rbm38	90	59.447	ENSANAG00000031959	RBM38	94	78.947	Aotus_nancymaae
ENSORLG00015012606	rbm38	98	59.216	ENSACLG00000019514	-	100	59.216	Astatotilapia_calliptera
ENSORLG00015012606	rbm38	94	55.319	ENSAMXG00000038120	rbm38	94	55.319	Astyanax_mexicanus
ENSORLG00015012606	rbm38	98	58.566	ENSAMXG00000015601	-	100	57.371	Astyanax_mexicanus
ENSORLG00015012606	rbm38	97	58.298	ENSBTAG00000008105	RBM38	97	58.298	Bos_taurus
ENSORLG00015012606	rbm38	54	66.154	WBGene00006321	sup-12	90	64.234	Caenorhabditis_elegans
ENSORLG00015012606	rbm38	97	57.021	ENSCJAG00000019139	RBM38	94	78.947	Callithrix_jacchus
ENSORLG00015012606	rbm38	97	57.872	ENSCAFG00020021943	RBM38	97	57.872	Canis_lupus_dingo
ENSORLG00015012606	rbm38	97	57.872	ENSCHIG00000002609	RBM38	97	57.872	Capra_hircus
ENSORLG00015012606	rbm38	97	57.872	ENSCPOG00000012781	RBM38	97	57.872	Cavia_porcellus
ENSORLG00015012606	rbm38	97	57.021	ENSCCAG00000036872	RBM38	94	78.947	Cebus_capucinus
ENSORLG00015012606	rbm38	97	57.872	ENSCATG00000032133	RBM38	94	78.947	Cercocebus_atys
ENSORLG00015012606	rbm38	96	57.759	ENSCLAG00000005906	RBM38	99	58.009	Chinchilla_lanigera
ENSORLG00015012606	rbm38	97	57.872	ENSCSAG00000015503	RBM38	97	57.872	Chlorocebus_sabaeus
ENSORLG00015012606	rbm38	93	56.485	ENSCPBG00000024059	RBM38	98	58.796	Chrysemys_picta_bellii
ENSORLG00015012606	rbm38	63	60.256	ENSCING00000025102	-	66	61.146	Ciona_intestinalis
ENSORLG00015012606	rbm38	65	59.873	ENSCSAVG00000001132	-	98	44.151	Ciona_savignyi
ENSORLG00015012606	rbm38	97	46.053	ENSCANG00000030105	-	86	46.053	Colobus_angolensis_palliatus
ENSORLG00015012606	rbm38	90	58.065	ENSCGRG00001012928	Rbm38	90	58.065	Cricetulus_griseus_chok1gshd
ENSORLG00015012606	rbm38	87	63.235	ENSCSEG00000020943	rbm38	66	64.039	Cynoglossus_semilaevis
ENSORLG00015012606	rbm38	98	57.937	ENSCSEG00000004701	-	99	61.304	Cynoglossus_semilaevis
ENSORLG00015012606	rbm38	98	59.921	ENSCVAG00000005472	-	100	59.921	Cyprinodon_variegatus
ENSORLG00015012606	rbm38	100	78.088	ENSCVAG00000015952	rbm38	100	81.275	Cyprinodon_variegatus
ENSORLG00015012606	rbm38	97	59.350	ENSDARG00000058818	rbm38	99	59.350	Danio_rerio
ENSORLG00015012606	rbm38	90	57.143	ENSDNOG00000032004	RBM38	99	57.143	Dasypus_novemcinctus
ENSORLG00015012606	rbm38	97	58.298	ENSECAG00000007700	RBM38	97	58.298	Equus_caballus
ENSORLG00015012606	rbm38	97	57.203	ENSEEUG00000013489	RBM38	97	57.203	Erinaceus_europaeus
ENSORLG00015012606	rbm38	91	64.192	ENSELUG00000000585	-	99	64.192	Esox_lucius
ENSORLG00015012606	rbm38	98	56.641	ENSELUG00000005849	-	100	56.641	Esox_lucius
ENSORLG00015012606	rbm38	97	56.596	ENSFCAG00000042916	RBM38	94	77.193	Felis_catus
ENSORLG00015012606	rbm38	71	65.294	ENSFALG00000010805	RBM38	89	65.909	Ficedula_albicollis
ENSORLG00015012606	rbm38	98	57.143	ENSFHEG00000006160	-	100	59.302	Fundulus_heteroclitus
ENSORLG00015012606	rbm38	100	83.333	ENSFHEG00000017748	rbm38	100	83.333	Fundulus_heteroclitus
ENSORLG00015012606	rbm38	77	63.243	ENSGMOG00000016655	-	100	66.492	Gadus_morhua
ENSORLG00015012606	rbm38	93	56.067	ENSGALG00000026081	RBM38	98	58.796	Gallus_gallus
ENSORLG00015012606	rbm38	93	72.222	ENSGACG00000015224	rbm38	100	72.222	Gasterosteus_aculeatus
ENSORLG00015012606	rbm38	93	56.723	ENSGACG00000009873	-	97	60.563	Gasterosteus_aculeatus
ENSORLG00015012606	rbm38	93	56.067	ENSGAGG00000001187	RBM38	98	58.333	Gopherus_agassizii
ENSORLG00015012606	rbm38	100	82.072	ENSHBUG00000012058	rbm38	100	82.072	Haplochromis_burtoni
ENSORLG00015012606	rbm38	98	59.216	ENSHBUG00000011778	-	100	59.216	Haplochromis_burtoni
ENSORLG00015012606	rbm38	97	57.627	ENSHGLG00000015077	RBM38	97	56.780	Heterocephalus_glaber_female
ENSORLG00015012606	rbm38	100	59.524	ENSHCOG00000019040	rbm38	100	59.524	Hippocampus_comes
ENSORLG00015012606	rbm38	85	62.326	ENSHCOG00000005622	-	60	62.791	Hippocampus_comes
ENSORLG00015012606	rbm38	94	56.846	ENSIPUG00000019349	-	94	58.952	Ictalurus_punctatus
ENSORLG00015012606	rbm38	91	70.763	ENSKMAG00000012402	rbm38	99	71.186	Kryptolebias_marmoratus
ENSORLG00015012606	rbm38	98	58.730	ENSLBEG00000016163	RBM38	100	58.333	Labrus_bergylta
ENSORLG00015012606	rbm38	100	81.673	ENSLBEG00000018878	rbm38	100	81.673	Labrus_bergylta
ENSORLG00015012606	rbm38	98	59.438	ENSLOCG00000003456	rbm38	100	59.438	Lepisosteus_oculatus
ENSORLG00015012606	rbm38	97	57.872	ENSMFAG00000043808	RBM38	94	78.947	Macaca_fascicularis
ENSORLG00015012606	rbm38	97	57.872	ENSMMUG00000031391	RBM38	94	78.947	Macaca_mulatta
ENSORLG00015012606	rbm38	97	57.872	ENSMNEG00000034683	RBM38	94	78.947	Macaca_nemestrina
ENSORLG00015012606	rbm38	50	62.295	ENSMLEG00000043261	-	98	62.295	Mandrillus_leucophaeus
ENSORLG00015012606	rbm38	100	82.869	ENSMAMG00000024135	rbm38	100	82.869	Mastacembelus_armatus
ENSORLG00015012606	rbm38	98	58.167	ENSMAMG00000020499	RBM38	100	59.524	Mastacembelus_armatus
ENSORLG00015012606	rbm38	100	82.072	ENSMZEG00005026036	rbm38	100	82.072	Maylandia_zebra
ENSORLG00015012606	rbm38	98	59.216	ENSMZEG00005000849	-	100	59.216	Maylandia_zebra
ENSORLG00015012606	rbm38	90	59.447	ENSMAUG00000021211	Rbm38	90	59.447	Mesocricetus_auratus
ENSORLG00015012606	rbm38	90	58.986	ENSMICG00000038011	RBM38	99	58.986	Microcebus_murinus
ENSORLG00015012606	rbm38	90	58.986	ENSMOCG00000008715	Rbm38	90	58.986	Microtus_ochrogaster
ENSORLG00015012606	rbm38	98	58.730	ENSMMOG00000020051	-	100	59.375	Mola_mola
ENSORLG00015012606	rbm38	89	58.333	ENSMODG00000016458	RBM38	90	59.259	Monodelphis_domestica
ENSORLG00015012606	rbm38	78	65.405	ENSMALG00000004680	RBM38	84	60.714	Monopterus_albus
ENSORLG00015012606	rbm38	100	66.932	ENSMALG00000022327	rbm38	100	69.323	Monopterus_albus
ENSORLG00015012606	rbm38	90	58.525	MGP_CAROLIEiJ_G0024745	Rbm38	90	58.525	Mus_caroli
ENSORLG00015012606	rbm38	90	58.525	ENSMUSG00000027510	Rbm38	90	58.525	Mus_musculus
ENSORLG00015012606	rbm38	90	58.525	MGP_PahariEiJ_G0026186	Rbm38	90	58.525	Mus_pahari
ENSORLG00015012606	rbm38	90	58.525	MGP_SPRETEiJ_G0025665	Rbm38	90	58.525	Mus_spretus
ENSORLG00015012606	rbm38	77	62.703	ENSMPUG00000006518	RBM38	98	60.488	Mustela_putorius_furo
ENSORLG00015012606	rbm38	90	60.092	ENSMLUG00000011140	RBM38	99	60.092	Myotis_lucifugus
ENSORLG00015012606	rbm38	100	81.673	ENSNBRG00000022685	rbm38	100	81.673	Neolamprologus_brichardi
ENSORLG00015012606	rbm38	98	59.216	ENSNBRG00000022545	-	100	59.216	Neolamprologus_brichardi
ENSORLG00015012606	rbm38	52	67.939	ENSMEUG00000005475	-	96	67.939	Notamacropus_eugenii
ENSORLG00015012606	rbm38	97	57.447	ENSODEG00000007980	RBM38	97	57.447	Octodon_degus
ENSORLG00015012606	rbm38	98	82.114	ENSONIG00000017073	rbm38	100	82.114	Oreochromis_niloticus
ENSORLG00015012606	rbm38	98	59.055	ENSONIG00000020324	-	100	59.055	Oreochromis_niloticus
ENSORLG00015012606	rbm38	96	57.082	ENSOANG00000009259	RBM38	88	57.082	Ornithorhynchus_anatinus
ENSORLG00015012606	rbm38	98	57.708	ENSORLG00000027180	-	100	58.039	Oryzias_latipes
ENSORLG00015012606	rbm38	100	98.805	ENSORLG00000012154	rbm38	100	98.805	Oryzias_latipes
ENSORLG00015012606	rbm38	98	57.708	ENSORLG00020020751	-	100	58.039	Oryzias_latipes_hni
ENSORLG00015012606	rbm38	100	99.203	ENSORLG00020017871	rbm38	100	99.203	Oryzias_latipes_hni
ENSORLG00015012606	rbm38	100	95.219	ENSOMEG00000006805	rbm38	100	95.219	Oryzias_melastigma
ENSORLG00015012606	rbm38	98	56.349	ENSOMEG00000023912	-	100	56.349	Oryzias_melastigma
ENSORLG00015012606	rbm38	97	57.627	ENSOGAG00000029136	RBM38	97	57.627	Otolemur_garnettii
ENSORLG00015012606	rbm38	97	56.596	ENSPPRG00000009507	RBM38	94	77.193	Panthera_pardus
ENSORLG00015012606	rbm38	81	61.340	ENSPTRG00000013661	RBM38	94	78.947	Pan_troglodytes
ENSORLG00015012606	rbm38	51	79.508	ENSPTRG00000045845	-	68	79.200	Pan_troglodytes
ENSORLG00015012606	rbm38	97	57.872	ENSPANG00000020919	-	94	78.947	Papio_anubis
ENSORLG00015012606	rbm38	94	50.450	ENSPANG00000033127	-	96	50.450	Papio_anubis
ENSORLG00015012606	rbm38	100	55.172	ENSPKIG00000025417	rbm38	100	57.647	Paramormyrops_kingsleyae
ENSORLG00015012606	rbm38	93	57.627	ENSPKIG00000018122	-	100	77.778	Paramormyrops_kingsleyae
ENSORLG00015012606	rbm38	95	55.895	ENSPSIG00000011649	RBM38	96	55.895	Pelodiscus_sinensis
ENSORLG00015012606	rbm38	100	69.444	ENSPMGG00000011343	rbm38	100	71.032	Periophthalmus_magnuspinnatus
ENSORLG00015012606	rbm38	98	57.874	ENSPMGG00000017094	-	100	57.143	Periophthalmus_magnuspinnatus
ENSORLG00015012606	rbm38	95	56.379	ENSPCIG00000013648	RBM38	94	56.379	Phascolarctos_cinereus
ENSORLG00015012606	rbm38	100	79.608	ENSPFOG00000011658	rbm38	100	83.529	Poecilia_formosa
ENSORLG00015012606	rbm38	98	58.594	ENSPLAG00000002500	-	100	59.289	Poecilia_latipinna
ENSORLG00015012606	rbm38	100	79.216	ENSPLAG00000005218	rbm38	100	83.137	Poecilia_latipinna
ENSORLG00015012606	rbm38	100	78.431	ENSPMEG00000015770	rbm38	100	83.137	Poecilia_mexicana
ENSORLG00015012606	rbm38	100	79.216	ENSPREG00000007398	rbm38	100	83.137	Poecilia_reticulata
ENSORLG00015012606	rbm38	97	57.627	ENSPCOG00000026201	RBM38	94	78.261	Propithecus_coquereli
ENSORLG00015012606	rbm38	73	74.648	ENSPVAG00000006457	RBM38	71	74.648	Pteropus_vampyrus
ENSORLG00015012606	rbm38	100	81.673	ENSPNYG00000021373	rbm38	100	81.673	Pundamilia_nyererei
ENSORLG00015012606	rbm38	98	59.216	ENSPNYG00000019727	-	100	81.197	Pundamilia_nyererei
ENSORLG00015012606	rbm38	79	64.516	ENSPNAG00000010596	rbm38	84	62.562	Pygocentrus_nattereri
ENSORLG00015012606	rbm38	98	59.363	ENSPNAG00000015123	-	91	79.661	Pygocentrus_nattereri
ENSORLG00015012606	rbm38	90	59.633	ENSRNOG00000006420	Rbm38	90	59.633	Rattus_norvegicus
ENSORLG00015012606	rbm38	97	52.632	ENSRROG00000036388	-	97	52.632	Rhinopithecus_roxellana
ENSORLG00015012606	rbm38	90	58.525	ENSSBOG00000031053	RBM38	91	85.714	Saimiri_boliviensis_boliviensis
ENSORLG00015012606	rbm38	94	56.250	ENSSFOG00015004453	rbm38	95	60.965	Scleropages_formosus
ENSORLG00015012606	rbm38	100	84.064	ENSSDUG00000022611	rbm38	100	84.064	Seriola_dumerili
ENSORLG00015012606	rbm38	98	58.730	ENSSDUG00000021082	RBM38	100	59.608	Seriola_dumerili
ENSORLG00015012606	rbm38	100	84.064	ENSSLDG00000010845	rbm38	100	84.064	Seriola_lalandi_dorsalis
ENSORLG00015012606	rbm38	98	59.127	ENSSLDG00000011778	RBM38	100	60.000	Seriola_lalandi_dorsalis
ENSORLG00015012606	rbm38	100	85.259	ENSSPAG00000011113	rbm38	100	85.259	Stegastes_partitus
ENSORLG00015012606	rbm38	98	59.127	ENSSPAG00000020989	RBM38	100	60.079	Stegastes_partitus
ENSORLG00015012606	rbm38	97	57.447	ENSSSCG00000007504	RBM38	97	57.447	Sus_scrofa
ENSORLG00015012606	rbm38	100	73.705	ENSTRUG00000024954	rbm38	100	76.096	Takifugu_rubripes
ENSORLG00015012606	rbm38	98	57.874	ENSTRUG00000019869	-	100	59.127	Takifugu_rubripes
ENSORLG00015012606	rbm38	93	61.506	ENSTNIG00000007093	-	100	61.506	Tetraodon_nigroviridis
ENSORLG00015012606	rbm38	97	57.447	ENSUAMG00000019780	RBM38	97	57.447	Ursus_americanus
ENSORLG00015012606	rbm38	97	57.872	ENSVVUG00000017246	RBM38	97	57.872	Vulpes_vulpes
ENSORLG00015012606	rbm38	89	58.182	ENSXETG00000011268	rbm38	96	59.276	Xenopus_tropicalis
ENSORLG00015012606	rbm38	72	58.031	ENSXCOG00000017324	-	88	58.031	Xiphophorus_couchianus
ENSORLG00015012606	rbm38	100	80.876	ENSXMAG00000023662	rbm38	100	84.861	Xiphophorus_maculatus