EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015013464 (Gene tree)
Gene ID: -
Gene Symbol: rbfox1l
Alias: -
Full Name: RNA binding fox-1 homolog 1%2C like
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 11397 bases
Position: chr16:19873412-19884808
Accession: ZDB-GENE-040923-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015012605	Fox-1_C	PF12414.8	7.3e-33	1	1
ENSORLP00015012595	Fox-1_C	PF12414.8	9.3e-33	1	1
ENSORLP00015012605	RRM_1	PF00076.22	9e-18	1	1
ENSORLP00015012595	RRM_1	PF00076.22	9.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015019771	-	1780	-	ENSORLP00015012605	381 (aa)	-	-
ENSORLT00015019725	-	1810	-	ENSORLP00015012595	391 (aa)	-	-

Gene Model

Click here to download ENSORLG00015013464's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015013464's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015013464	rbfox1l	63	62.406	ENSORLG00015000797	-	57	64.662
ENSORLG00015013464	rbfox1l	63	65.649	ENSORLG00015007027	rbfox2	72	59.028
ENSORLG00015013464	rbfox1l	87	58.357	ENSORLG00015009200	rbfox3b	60	71.739

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015013464	rbfox1l	97	89.702	ENSAPOG00000016304	rbfox1l	98	89.702	Acanthochromis_polyacanthus
ENSORLG00015013464	rbfox1l	100	84.595	ENSACIG00000006441	rbfox1l	100	83.812	Amphilophus_citrinellus
ENSORLG00015013464	rbfox1l	88	86.228	ENSAOCG00000020938	rbfox1l	97	85.671	Amphiprion_ocellaris
ENSORLG00015013464	rbfox1l	100	90.289	ENSAPEG00000008232	rbfox1l	100	90.289	Amphiprion_percula
ENSORLG00015013464	rbfox1l	100	86.162	ENSATEG00000022649	rbfox1l	100	85.379	Anabas_testudineus
ENSORLG00015013464	rbfox1l	65	74.308	ENSACAG00000011931	-	89	75.403	Anolis_carolinensis
ENSORLG00015013464	rbfox1l	100	86.684	ENSACLG00000021394	rbfox1l	100	88.251	Astatotilapia_calliptera
ENSORLG00015013464	rbfox1l	100	86.269	ENSAMXG00000010470	rbfox1l	100	82.642	Astyanax_mexicanus
ENSORLG00015013464	rbfox1l	100	53.808	ENSCPBG00000010944	-	100	57.949	Chrysemys_picta_bellii
ENSORLG00015013464	rbfox1l	100	88.021	ENSCSEG00000018898	rbfox1l	100	86.198	Cynoglossus_semilaevis
ENSORLG00015013464	rbfox1l	100	90.551	ENSCVAG00000007986	rbfox1l	100	90.551	Cyprinodon_variegatus
ENSORLG00015013464	rbfox1l	100	83.420	ENSDARG00000021184	rbfox1l	100	81.088	Danio_rerio
ENSORLG00015013464	rbfox1l	100	79.898	ENSELUG00000015077	rbfox1l	100	81.170	Esox_lucius
ENSORLG00015013464	rbfox1l	89	92.593	ENSFHEG00000016557	rbfox1l	95	95.122	Fundulus_heteroclitus
ENSORLG00015013464	rbfox1l	100	83.290	ENSGMOG00000005040	rbfox1l	100	82.507	Gadus_morhua
ENSORLG00015013464	rbfox1l	92	89.266	ENSGAFG00000013211	rbfox1l	97	89.266	Gambusia_affinis
ENSORLG00015013464	rbfox1l	100	86.945	ENSGACG00000010757	rbfox1l	100	87.467	Gasterosteus_aculeatus
ENSORLG00015013464	rbfox1l	66	71.654	ENSGAGG00000012440	-	84	72.653	Gopherus_agassizii
ENSORLG00015013464	rbfox1l	100	86.684	ENSHBUG00000013406	rbfox1l	100	88.251	Haplochromis_burtoni
ENSORLG00015013464	rbfox1l	100	84.115	ENSHCOG00000020771	rbfox1l	100	85.938	Hippocampus_comes
ENSORLG00015013464	rbfox1l	99	81.890	ENSIPUG00000000065	rbfox1l	99	82.073	Ictalurus_punctatus
ENSORLG00015013464	rbfox1l	100	86.753	ENSKMAG00000005146	rbfox1l	100	85.974	Kryptolebias_marmoratus
ENSORLG00015013464	rbfox1l	100	89.556	ENSLBEG00000017089	rbfox1l	100	90.078	Labrus_bergylta
ENSORLG00015013464	rbfox1l	100	88.512	ENSMAMG00000019480	rbfox1l	100	88.512	Mastacembelus_armatus
ENSORLG00015013464	rbfox1l	100	86.684	ENSMZEG00005016374	rbfox1l	100	88.251	Maylandia_zebra
ENSORLG00015013464	rbfox1l	100	88.251	ENSMMOG00000016530	rbfox1l	100	87.467	Mola_mola
ENSORLG00015013464	rbfox1l	100	84.856	ENSMALG00000009384	rbfox1l	100	85.379	Monopterus_albus
ENSORLG00015013464	rbfox1l	100	89.295	ENSNBRG00000003346	rbfox1l	100	88.512	Neolamprologus_brichardi
ENSORLG00015013464	rbfox1l	100	87.206	ENSONIG00000012754	rbfox1l	100	88.773	Oreochromis_niloticus
ENSORLG00015013464	rbfox1l	100	98.688	ENSORLG00000011269	rbfox1l	100	98.688	Oryzias_latipes
ENSORLG00015013464	rbfox1l	100	98.950	ENSORLG00020000162	rbfox1l	100	98.950	Oryzias_latipes_hni
ENSORLG00015013464	rbfox1l	100	96.588	ENSOMEG00000010584	rbfox1l	100	96.588	Oryzias_melastigma
ENSORLG00015013464	rbfox1l	100	85.417	ENSPKIG00000012029	rbfox1l	100	84.896	Paramormyrops_kingsleyae
ENSORLG00015013464	rbfox1l	100	81.937	ENSPMGG00000012082	rbfox1l	100	80.105	Periophthalmus_magnuspinnatus
ENSORLG00015013464	rbfox1l	100	90.339	ENSPFOG00000009338	rbfox1l	100	90.078	Poecilia_formosa
ENSORLG00015013464	rbfox1l	85	80.734	ENSPLAG00000012816	rbfox1l	94	80.128	Poecilia_latipinna
ENSORLG00015013464	rbfox1l	100	86.162	ENSPMEG00000017597	rbfox1l	100	85.640	Poecilia_mexicana
ENSORLG00015013464	rbfox1l	100	86.423	ENSPREG00000007940	rbfox1l	100	85.901	Poecilia_reticulata
ENSORLG00015013464	rbfox1l	100	86.423	ENSPNYG00000002098	rbfox1l	100	87.990	Pundamilia_nyererei
ENSORLG00015013464	rbfox1l	100	84.755	ENSPNAG00000001620	rbfox1l	100	81.137	Pygocentrus_nattereri
ENSORLG00015013464	rbfox1l	100	81.558	ENSSFOG00015000675	rbfox1l	100	82.857	Scleropages_formosus
ENSORLG00015013464	rbfox1l	100	86.684	ENSSMAG00000013090	rbfox1l	100	87.206	Scophthalmus_maximus
ENSORLG00015013464	rbfox1l	100	84.833	ENSSDUG00000008705	rbfox1l	100	86.118	Seriola_dumerili
ENSORLG00015013464	rbfox1l	100	87.371	ENSSLDG00000022256	rbfox1l	100	86.340	Seriola_lalandi_dorsalis
ENSORLG00015013464	rbfox1l	100	91.076	ENSSPAG00000016620	rbfox1l	100	91.076	Stegastes_partitus
ENSORLG00015013464	rbfox1l	96	85.135	ENSTRUG00000015905	rbfox1l	100	82.973	Takifugu_rubripes
ENSORLG00015013464	rbfox1l	65	80.669	ENSTNIG00000008088	rbfox1l	97	83.206	Tetraodon_nigroviridis
ENSORLG00015013464	rbfox1l	100	90.078	ENSXMAG00000023471	rbfox1l	100	89.817	Xiphophorus_maculatus