EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00015013633 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Oryzias_latipes_hsok
Status
putative
Strand
Plus strand
Length
7792 bases
Position
chr16:6632743-6640534
Accession
101163762
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00015030122PABPPF00658.187.2e-3211
ENSORLP00015030122RRM_5PF13893.66.2e-0811
ENSORLP00015030122RRM_1PF00076.227.8e-9314
ENSORLP00015030122RRM_1PF00076.227.8e-9324
ENSORLP00015030122RRM_1PF00076.227.8e-9334
ENSORLP00015030122RRM_1PF00076.227.8e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00015020005-5677-ENSORLP00015030122635 (aa)XP_011483184H2LBS6
Gene Model
Click here to download ENSORLG00015013633's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015013633's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00015013633pabpc15530.303ENSORLG00015013815ncl8532.530
ENSORLG00015013633pabpc110084.144ENSORLG00015010932-10083.673
ENSORLG00015013633pabpc19875.952ENSORLG00015017018pabpc1l9974.194
ENSORLG00015013633pabpc15936.145ENSORLG00015010143elavl48136.145
ENSORLG00015013633pabpc15837.349ENSORLG00015013661ELAVL28537.349
ENSORLG00015013633pabpc15937.349ENSORLG00015000662elavl39037.349
ENSORLG00015013633pabpc19884.259ENSORLG00015015042pabpc49784.259
ENSORLG00015013633pabpc15636.000ENSORLG00015001774rbm196036.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00015013633pabpc15880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSORLG00015013633pabpc15880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSORLG00015013633pabpc110089.342ENSAPOG00000017776pabpc1b10089.185Acanthochromis_polyacanthus
ENSORLG00015013633pabpc110097.165ENSAPOG00000015105pabpc1a10097.165Acanthochromis_polyacanthus
ENSORLG00015013633pabpc15880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSORLG00015013633pabpc110096.693ENSACIG00000004685pabpc1a10096.693Amphilophus_citrinellus
ENSORLG00015013633pabpc110085.023ENSACIG00000018366pabpc1b10084.555Amphilophus_citrinellus
ENSORLG00015013633pabpc110097.480ENSAOCG00000011656pabpc1a10097.480Amphiprion_ocellaris
ENSORLG00015013633pabpc110088.871ENSAOCG00000019839pabpc1b10088.871Amphiprion_ocellaris
ENSORLG00015013633pabpc110088.871ENSAPEG00000010435pabpc1b10088.871Amphiprion_percula
ENSORLG00015013633pabpc110097.480ENSAPEG00000006963pabpc1a10097.480Amphiprion_percula
ENSORLG00015013633pabpc110097.008ENSATEG00000024852pabpc1a10097.008Anabas_testudineus
ENSORLG00015013633pabpc110088.576ENSATEG00000012917pabpc1b10088.576Anabas_testudineus
ENSORLG00015013633pabpc15880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSORLG00015013633pabpc15880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSORLG00015013633pabpc110096.220ENSACLG00000009399pabpc1a10099.010Astatotilapia_calliptera
ENSORLG00015013633pabpc110088.088ENSACLG00000014335pabpc1b10087.931Astatotilapia_calliptera
ENSORLG00015013633pabpc110089.498ENSAMXG00000008599pabpc1b10089.342Astyanax_mexicanus
ENSORLG00015013633pabpc15977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSORLG00015013633pabpc15979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSORLG00015013633pabpc15880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSORLG00015013633pabpc15979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSORLG00015013633pabpc15880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSORLG00015013633pabpc15880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSORLG00015013633pabpc15880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSORLG00015013633pabpc15880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSORLG00015013633pabpc15880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSORLG00015013633pabpc15880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSORLG00015013633pabpc15880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSORLG00015013633pabpc15878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSORLG00015013633pabpc15878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSORLG00015013633pabpc15880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSORLG00015013633pabpc15780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSORLG00015013633pabpc19996.203ENSCSEG00000013324pabpc1a10096.203Cynoglossus_semilaevis
ENSORLG00015013633pabpc110087.774ENSCSEG00000015241-10087.774Cynoglossus_semilaevis
ENSORLG00015013633pabpc110087.324ENSCVAG00000005489pabpc1b10087.167Cyprinodon_variegatus
ENSORLG00015013633pabpc110096.535ENSCVAG00000021872pabpc1a10096.535Cyprinodon_variegatus
ENSORLG00015013633pabpc110088.245ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSORLG00015013633pabpc110091.379ENSDARG00000017219pabpc1a10091.379Danio_rerio
ENSORLG00015013633pabpc15880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSORLG00015013633pabpc15877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSORLG00015013633pabpc15978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSORLG00015013633pabpc15978.641ENSECAG00000002620-9878.641Equus_caballus
ENSORLG00015013633pabpc15976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSORLG00015013633pabpc15958.621ENSELUG00000005389-9758.621Esox_lucius
ENSORLG00015013633pabpc110087.500ENSELUG00000015062-10087.344Esox_lucius
ENSORLG00015013633pabpc19993.553ENSELUG00000003614pabpc1a10093.553Esox_lucius
ENSORLG00015013633pabpc15880.102ENSFCAG00000039701-9880.102Felis_catus
ENSORLG00015013633pabpc15880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSORLG00015013633pabpc110096.693ENSFHEG00000018979pabpc1a10096.693Fundulus_heteroclitus
ENSORLG00015013633pabpc110088.715ENSFHEG00000008186pabpc1b10088.871Fundulus_heteroclitus
ENSORLG00015013633pabpc110080.465ENSGMOG00000002448-10079.294Gadus_morhua
ENSORLG00015013633pabpc19993.818ENSGMOG00000013448pabpc1a9993.663Gadus_morhua
ENSORLG00015013633pabpc110089.342ENSGAFG00000010193pabpc1b10089.498Gambusia_affinis
ENSORLG00015013633pabpc110096.378ENSGAFG00000019750pabpc1a10096.378Gambusia_affinis
ENSORLG00015013633pabpc110087.752ENSGACG00000003771pabpc1b10087.752Gasterosteus_aculeatus
ENSORLG00015013633pabpc110096.220ENSGACG00000003572pabpc1a10096.220Gasterosteus_aculeatus
ENSORLG00015013633pabpc15880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSORLG00015013633pabpc15880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSORLG00015013633pabpc110088.088ENSHBUG00000002075pabpc1b10087.931Haplochromis_burtoni
ENSORLG00015013633pabpc110096.220ENSHBUG00000020487pabpc1a10099.010Haplochromis_burtoni
ENSORLG00015013633pabpc15879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSORLG00015013633pabpc15879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSORLG00015013633pabpc15879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSORLG00015013633pabpc110096.535ENSHCOG00000013502pabpc1a10096.535Hippocampus_comes
ENSORLG00015013633pabpc19876.835ENSHCOG00000003175pabpc1b9981.053Hippocampus_comes
ENSORLG00015013633pabpc18155.224ENSIPUG00000018724-8555.224Ictalurus_punctatus
ENSORLG00015013633pabpc110083.987ENSIPUG00000010791-10083.830Ictalurus_punctatus
ENSORLG00015013633pabpc110090.236ENSIPUG00000008848pabpc1a10090.236Ictalurus_punctatus
ENSORLG00015013633pabpc17554.470ENSIPUG00000021244-6554.470Ictalurus_punctatus
ENSORLG00015013633pabpc15879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSORLG00015013633pabpc15879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSORLG00015013633pabpc15878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSORLG00015013633pabpc110097.323ENSKMAG00000000605pabpc1a10097.323Kryptolebias_marmoratus
ENSORLG00015013633pabpc110087.736ENSKMAG00000008049pabpc1b10087.893Kryptolebias_marmoratus
ENSORLG00015013633pabpc110096.220ENSLBEG00000024002-10096.220Labrus_bergylta
ENSORLG00015013633pabpc110088.401ENSLBEG00000026845pabpc1b10088.069Labrus_bergylta
ENSORLG00015013633pabpc15878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSORLG00015013633pabpc15879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSORLG00015013633pabpc15880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSORLG00015013633pabpc15880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSORLG00015013633pabpc15880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSORLG00015013633pabpc15880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSORLG00015013633pabpc15880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSORLG00015013633pabpc110096.850ENSMAMG00000004502-10096.850Mastacembelus_armatus
ENSORLG00015013633pabpc110088.715ENSMAMG00000014610pabpc1b10088.715Mastacembelus_armatus
ENSORLG00015013633pabpc110088.088ENSMZEG00005026745pabpc1b10087.931Maylandia_zebra
ENSORLG00015013633pabpc110096.220ENSMZEG00005025416pabpc1a10099.010Maylandia_zebra
ENSORLG00015013633pabpc15880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSORLG00015013633pabpc110083.673ENSMMOG00000018009pabpc1b10083.359Mola_mola
ENSORLG00015013633pabpc110094.844ENSMMOG00000018044pabpc1a10094.844Mola_mola
ENSORLG00015013633pabpc19872.524ENSMODG00000013156-9872.684Monodelphis_domestica
ENSORLG00015013633pabpc19965.884ENSMODG00000015024-9965.517Monodelphis_domestica
ENSORLG00015013633pabpc110084.458ENSMALG00000006066pabpc1b10084.458Monopterus_albus
ENSORLG00015013633pabpc110096.850ENSMALG00000013020-10096.850Monopterus_albus
ENSORLG00015013633pabpc15881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSORLG00015013633pabpc110096.220ENSNBRG00000003068-10099.010Neolamprologus_brichardi
ENSORLG00015013633pabpc110088.088ENSNBRG00000013737pabpc1b10087.931Neolamprologus_brichardi
ENSORLG00015013633pabpc15880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSORLG00015013633pabpc15879.592ENSODEG00000018540-9879.592Octodon_degus
ENSORLG00015013633pabpc110095.591ENSONIG00000006871-10095.591Oreochromis_niloticus
ENSORLG00015013633pabpc110088.088ENSONIG00000002717pabpc1b10087.931Oreochromis_niloticus
ENSORLG00015013633pabpc15880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSORLG00015013633pabpc1100100.000ENSORLG00000002691pabpc1a100100.000Oryzias_latipes
ENSORLG00015013633pabpc110083.830ENSORLG00000003008-10083.359Oryzias_latipes
ENSORLG00015013633pabpc110099.843ENSORLG00020022398pabpc1a10099.843Oryzias_latipes_hni
ENSORLG00015013633pabpc110083.830ENSORLG00020022259-10083.359Oryzias_latipes_hni
ENSORLG00015013633pabpc18886.139ENSOMEG00000013627pabpc1b10086.139Oryzias_melastigma
ENSORLG00015013633pabpc110099.055ENSOMEG00000020219pabpc1a10099.055Oryzias_melastigma
ENSORLG00015013633pabpc15880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSORLG00015013633pabpc15880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSORLG00015013633pabpc15880.102ENSOARG00000005943-9880.102Ovis_aries
ENSORLG00015013633pabpc15880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSORLG00015013633pabpc15880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSORLG00015013633pabpc15880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSORLG00015013633pabpc15880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSORLG00015013633pabpc15880.102ENSPANG00000011549-9880.102Papio_anubis
ENSORLG00015013633pabpc110089.028ENSPKIG00000005676pabpc1b10088.871Paramormyrops_kingsleyae
ENSORLG00015013633pabpc17092.377ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSORLG00015013633pabpc17592.500ENSPMGG00000022487pabpc1a9892.887Periophthalmus_magnuspinnatus
ENSORLG00015013633pabpc19971.587ENSPCIG00000016995-5571.451Phascolarctos_cinereus
ENSORLG00015013633pabpc110095.054ENSPFOG00000010815pabpc1a10095.054Poecilia_formosa
ENSORLG00015013633pabpc110089.342ENSPFOG00000005917pabpc1b10089.498Poecilia_formosa
ENSORLG00015013633pabpc110089.498ENSPLAG00000001388pabpc1b10089.655Poecilia_latipinna
ENSORLG00015013633pabpc110097.008ENSPLAG00000004114pabpc1a10097.008Poecilia_latipinna
ENSORLG00015013633pabpc110089.342ENSPMEG00000014399pabpc1b10089.498Poecilia_mexicana
ENSORLG00015013633pabpc110097.008ENSPMEG00000001334pabpc1a10097.008Poecilia_mexicana
ENSORLG00015013633pabpc19995.183ENSPREG00000019595pabpc1a100100.000Poecilia_reticulata
ENSORLG00015013633pabpc110089.498ENSPREG00000010911pabpc1b10089.655Poecilia_reticulata
ENSORLG00015013633pabpc15880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSORLG00015013633pabpc15980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSORLG00015013633pabpc15879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSORLG00015013633pabpc15980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSORLG00015013633pabpc110096.220ENSPNYG00000005192pabpc1a10096.220Pundamilia_nyererei
ENSORLG00015013633pabpc110088.088ENSPNYG00000012578pabpc1b10087.931Pundamilia_nyererei
ENSORLG00015013633pabpc110090.738ENSPNAG00000028408pabpc1a10090.424Pygocentrus_nattereri
ENSORLG00015013633pabpc110089.498ENSPNAG00000024626pabpc1b10089.342Pygocentrus_nattereri
ENSORLG00015013633pabpc15880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSORLG00015013633pabpc18689.810ENSRBIG00000028738-9489.810Rhinopithecus_bieti
ENSORLG00015013633pabpc15880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSORLG00015013633pabpc19864.423ENSSHAG00000000511-10063.942Sarcophilus_harrisii
ENSORLG00015013633pabpc16978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSORLG00015013633pabpc110089.011ENSSFOG00015002752-10088.854Scleropages_formosus
ENSORLG00015013633pabpc110089.639ENSSFOG00015006662pabpc1a10089.639Scleropages_formosus
ENSORLG00015013633pabpc110088.088ENSSMAG00000006869pabpc1b10087.931Scophthalmus_maximus
ENSORLG00015013633pabpc110096.535ENSSMAG00000010803pabpc1a10096.535Scophthalmus_maximus
ENSORLG00015013633pabpc110096.850ENSSDUG00000006675pabpc1a10096.850Seriola_dumerili
ENSORLG00015013633pabpc110087.147ENSSDUG00000011965pabpc1b10086.813Seriola_dumerili
ENSORLG00015013633pabpc110088.802ENSSLDG00000014156pabpc1b10088.474Seriola_lalandi_dorsalis
ENSORLG00015013633pabpc110096.850ENSSLDG00000011661pabpc1a10096.850Seriola_lalandi_dorsalis
ENSORLG00015013633pabpc110089.342ENSSPAG00000019265pabpc1b10089.011Stegastes_partitus
ENSORLG00015013633pabpc110097.480ENSSPAG00000014453-10097.480Stegastes_partitus
ENSORLG00015013633pabpc15880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSORLG00015013633pabpc15880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSORLG00015013633pabpc110085.759ENSTRUG00000003767-10085.759Takifugu_rubripes
ENSORLG00015013633pabpc110094.340ENSTRUG00000011577-10094.654Takifugu_rubripes
ENSORLG00015013633pabpc110091.318ENSTNIG00000013307pabpc1a10091.628Tetraodon_nigroviridis
ENSORLG00015013633pabpc110086.293ENSTNIG00000009153pabpc1b10085.670Tetraodon_nigroviridis
ENSORLG00015013633pabpc15880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSORLG00015013633pabpc15880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSORLG00015013633pabpc15880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSORLG00015013633pabpc19754.106ENSUMAG00000023926-8969.890Ursus_maritimus
ENSORLG00015013633pabpc15879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSORLG00015013633pabpc19744.988ENSXETG00000015439-9744.931Xenopus_tropicalis
ENSORLG00015013633pabpc110085.243ENSXCOG00000019901pabpc1b10085.243Xiphophorus_couchianus
ENSORLG00015013633pabpc110091.339ENSXCOG00000017066pabpc1a10091.339Xiphophorus_couchianus
ENSORLG00015013633pabpc110089.498ENSXMAG00000003753pabpc1b10089.655Xiphophorus_maculatus
ENSORLG00015013633pabpc110096.850ENSXMAG00000002555pabpc1a10096.850Xiphophorus_maculatus

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