EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015013672 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 35513 bases
Position: chr9:21581344-21616856
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015012804	RRM_1	PF00076.22	1.6e-32	1	2
ENSORLP00015012804	RRM_1	PF00076.22	1.6e-32	2	2
ENSORLP00015012826	RRM_1	PF00076.22	2.3e-32	1	2
ENSORLP00015012826	RRM_1	PF00076.22	2.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015020035	-	2258	-	ENSORLP00015012826	491 (aa)	-	-
ENSORLT00015020022	-	1978	-	ENSORLP00015012804	436 (aa)	-	-

Gene Model

Click here to download ENSORLG00015013672's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015013672's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015013672	-	75	72.036	ENSORLG00015004592	msi2a	98	72.036
ENSORLG00015013672	-	72	90.566	ENSORLG00015003916	MSI1	99	92.258

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015013672	-	76	81.215	ENSG00000135097	MSI1	99	87.931	Homo_sapiens
ENSORLG00015013672	-	71	98.567	ENSAPOG00000023458	-	100	98.567	Acanthochromis_polyacanthus
ENSORLG00015013672	-	71	92.023	ENSAPOG00000003191	MSI1	100	92.023	Acanthochromis_polyacanthus
ENSORLG00015013672	-	71	68.508	ENSAMEG00000013302	MSI1	100	68.508	Ailuropoda_melanoleuca
ENSORLG00015013672	-	65	94.014	ENSACIG00000017754	-	78	90.615	Amphilophus_citrinellus
ENSORLG00015013672	-	71	92.023	ENSAOCG00000003804	MSI1	100	92.023	Amphiprion_ocellaris
ENSORLG00015013672	-	71	92.949	ENSAOCG00000009031	-	95	92.949	Amphiprion_ocellaris
ENSORLG00015013672	-	75	96.185	ENSAPEG00000006857	-	88	96.438	Amphiprion_percula
ENSORLG00015013672	-	71	92.023	ENSAPEG00000003245	MSI1	100	92.023	Amphiprion_percula
ENSORLG00015013672	-	76	83.380	ENSATEG00000023779	-	100	83.944	Anabas_testudineus
ENSORLG00015013672	-	76	94.940	ENSATEG00000017059	MSI1	100	95.211	Anabas_testudineus
ENSORLG00015013672	-	76	81.994	ENSACAG00000002762	MSI1	100	85.319	Anolis_carolinensis
ENSORLG00015013672	-	58	84.965	ENSANAG00000027901	-	88	84.965	Aotus_nancymaae
ENSORLG00015013672	-	76	81.215	ENSANAG00000027151	MSI1	100	84.530	Aotus_nancymaae
ENSORLG00015013672	-	76	87.749	ENSACLG00000011230	MSI1	100	92.593	Astatotilapia_calliptera
ENSORLG00015013672	-	71	99.140	ENSACLG00000000117	-	100	99.390	Astatotilapia_calliptera
ENSORLG00015013672	-	69	93.333	ENSAMXG00000038960	msi1	76	93.730	Astyanax_mexicanus
ENSORLG00015013672	-	71	87.267	ENSBTAG00000009800	MSI1	100	87.267	Bos_taurus
ENSORLG00015013672	-	71	87.307	ENSCJAG00000008578	MSI1	100	84.530	Callithrix_jacchus
ENSORLG00015013672	-	76	80.939	ENSCAFG00000010283	MSI1	100	84.254	Canis_familiaris
ENSORLG00015013672	-	71	82.315	ENSCAFG00020020585	MSI1	100	86.174	Canis_lupus_dingo
ENSORLG00015013672	-	76	80.548	ENSCHIG00000024304	MSI1	100	82.289	Capra_hircus
ENSORLG00015013672	-	71	81.651	ENSTSYG00000033949	MSI1	95	85.321	Carlito_syrichta
ENSORLG00015013672	-	71	73.163	ENSCAPG00000003919	MSI1	89	76.997	Cavia_aperea
ENSORLG00015013672	-	72	82.267	ENSCPOG00000012361	MSI1	100	85.965	Cavia_porcellus
ENSORLG00015013672	-	76	81.215	ENSCCAG00000035567	MSI1	100	84.530	Cebus_capucinus
ENSORLG00015013672	-	76	83.239	ENSCATG00000030019	MSI1	100	84.530	Cercocebus_atys
ENSORLG00015013672	-	71	82.456	ENSCLAG00000011329	MSI1	100	85.965	Chinchilla_lanigera
ENSORLG00015013672	-	56	89.344	ENSCSAG00000002265	MSI1	96	84.477	Chlorocebus_sabaeus
ENSORLG00015013672	-	71	90.705	ENSCPBG00000011349	MSI1	100	88.034	Chrysemys_picta_bellii
ENSORLG00015013672	-	71	81.707	ENSCANG00000040651	MSI1	100	85.366	Colobus_angolensis_palliatus
ENSORLG00015013672	-	76	81.215	ENSCGRG00001018883	Msi1	100	84.530	Cricetulus_griseus_chok1gshd
ENSORLG00015013672	-	71	81.763	ENSCGRG00000002191	Msi1	72	85.410	Cricetulus_griseus_crigri
ENSORLG00015013672	-	76	86.325	ENSCSEG00000005834	-	100	91.168	Cynoglossus_semilaevis
ENSORLG00015013672	-	71	94.498	ENSCSEG00000011032	MSI1	100	94.498	Cynoglossus_semilaevis
ENSORLG00015013672	-	76	97.273	ENSCSEG00000008352	-	100	97.421	Cynoglossus_semilaevis
ENSORLG00015013672	-	76	98.788	ENSCVAG00000009100	MSI1	100	98.854	Cyprinodon_variegatus
ENSORLG00015013672	-	71	94.932	ENSDARG00000010710	msi1	100	95.327	Danio_rerio
ENSORLG00015013672	-	56	92.130	ENSDARG00000102015	CABZ01037298.1	98	92.130	Danio_rerio
ENSORLG00015013672	-	71	79.114	ENSDNOG00000005713	MSI1	91	82.911	Dasypus_novemcinctus
ENSORLG00015013672	-	71	81.763	ENSDORG00000005610	Msi1	93	85.410	Dipodomys_ordii
ENSORLG00015013672	-	71	78.354	ENSETEG00000004756	MSI1	100	82.012	Echinops_telfairi
ENSORLG00015013672	-	76	85.714	ENSEASG00005004736	MSI1	100	85.714	Equus_asinus_asinus
ENSORLG00015013672	-	71	87.307	ENSECAG00000017526	MSI1	100	84.530	Equus_caballus
ENSORLG00015013672	-	71	87.578	ENSELUG00000023280	-	100	87.267	Esox_lucius
ENSORLG00015013672	-	73	89.881	ENSELUG00000023219	MSI1	92	90.544	Esox_lucius
ENSORLG00015013672	-	71	87.307	ENSFCAG00000011007	MSI1	100	84.530	Felis_catus
ENSORLG00015013672	-	71	86.000	ENSFALG00000007574	MSI1	100	90.000	Ficedula_albicollis
ENSORLG00015013672	-	71	81.402	ENSFDAG00000019586	MSI1	100	85.061	Fukomys_damarensis
ENSORLG00015013672	-	71	98.854	ENSFHEG00000022446	MSI1	100	98.854	Fundulus_heteroclitus
ENSORLG00015013672	-	76	87.576	ENSFHEG00000003560	-	100	92.023	Fundulus_heteroclitus
ENSORLG00015013672	-	76	78.028	ENSGMOG00000017838	-	100	82.817	Gadus_morhua
ENSORLG00015013672	-	71	95.702	ENSGMOG00000001006	MSI1	99	95.702	Gadus_morhua
ENSORLG00015013672	-	67	89.313	ENSGALG00000007227	MSI1	95	78.947	Gallus_gallus
ENSORLG00015013672	-	76	79.880	ENSGAFG00000005860	-	100	79.880	Gambusia_affinis
ENSORLG00015013672	-	67	92.097	ENSGAFG00000021522	MSI1	94	92.097	Gambusia_affinis
ENSORLG00015013672	-	76	80.055	ENSGACG00000008674	-	100	84.488	Gasterosteus_aculeatus
ENSORLG00015013672	-	76	96.061	ENSGACG00000012679	MSI1	100	97.421	Gasterosteus_aculeatus
ENSORLG00015013672	-	76	89.458	ENSGAGG00000016037	MSI1	100	89.458	Gopherus_agassizii
ENSORLG00015013672	-	71	82.166	ENSGGOG00000010328	MSI1	100	85.987	Gorilla_gorilla
ENSORLG00015013672	-	71	99.140	ENSHBUG00000011841	-	100	99.140	Haplochromis_burtoni
ENSORLG00015013672	-	76	87.749	ENSHBUG00000021921	MSI1	100	92.593	Haplochromis_burtoni
ENSORLG00015013672	-	76	80.939	ENSHGLG00000012782	MSI1	100	84.254	Heterocephalus_glaber_female
ENSORLG00015013672	-	71	81.402	ENSHGLG00100016848	MSI1	100	85.061	Heterocephalus_glaber_male
ENSORLG00015013672	-	71	90.939	ENSHCOG00000012019	MSI1	100	90.939	Hippocampus_comes
ENSORLG00015013672	-	76	91.317	ENSHCOG00000012067	-	100	91.785	Hippocampus_comes
ENSORLG00015013672	-	71	93.000	ENSIPUG00000001976	msi1	99	93.000	Ictalurus_punctatus
ENSORLG00015013672	-	71	82.315	ENSSTOG00000009799	MSI1	100	86.174	Ictidomys_tridecemlineatus
ENSORLG00015013672	-	76	74.927	ENSJJAG00000010643	-	100	74.927	Jaculus_jaculus
ENSORLG00015013672	-	76	82.353	ENSJJAG00000010463	Msi1	100	84.530	Jaculus_jaculus
ENSORLG00015013672	-	71	97.421	ENSKMAG00000011251	MSI1	100	97.421	Kryptolebias_marmoratus
ENSORLG00015013672	-	71	92.233	ENSKMAG00000019877	-	100	92.233	Kryptolebias_marmoratus
ENSORLG00015013672	-	71	93.548	ENSLBEG00000001375	-	100	92.023	Labrus_bergylta
ENSORLG00015013672	-	76	98.485	ENSLBEG00000008789	MSI1	100	98.567	Labrus_bergylta
ENSORLG00015013672	-	71	83.824	ENSLACG00000018287	MSI1	100	84.884	Latimeria_chalumnae
ENSORLG00015013672	-	68	77.377	ENSLAFG00000009412	MSI1	100	77.049	Loxodonta_africana
ENSORLG00015013672	-	71	82.456	ENSMFAG00000001798	MSI1	100	85.965	Macaca_fascicularis
ENSORLG00015013672	-	71	82.456	ENSMMUG00000031527	MSI1	96	85.057	Macaca_mulatta
ENSORLG00015013672	-	76	85.714	ENSMNEG00000040034	MSI1	100	85.714	Macaca_nemestrina
ENSORLG00015013672	-	71	81.707	ENSMLEG00000003921	MSI1	100	85.366	Mandrillus_leucophaeus
ENSORLG00015013672	-	71	98.281	ENSMAMG00000002279	MSI1	100	98.281	Mastacembelus_armatus
ENSORLG00015013672	-	71	92.581	ENSMAMG00000018426	-	100	91.453	Mastacembelus_armatus
ENSORLG00015013672	-	76	99.091	ENSMZEG00005000340	-	100	99.140	Maylandia_zebra
ENSORLG00015013672	-	76	87.749	ENSMZEG00005026892	MSI1	100	92.593	Maylandia_zebra
ENSORLG00015013672	-	50	94.675	ENSMGAG00000016518	-	100	94.675	Meleagris_gallopavo
ENSORLG00015013672	-	51	91.964	ENSMAUG00000016820	Msi1	100	89.712	Mesocricetus_auratus
ENSORLG00015013672	-	76	82.073	ENSMICG00000033181	MSI1	100	84.530	Microcebus_murinus
ENSORLG00015013672	-	76	80.939	ENSMOCG00000002286	Msi1	100	84.254	Microtus_ochrogaster
ENSORLG00015013672	-	71	91.613	ENSMMOG00000010492	MSI1	96	91.613	Mola_mola
ENSORLG00015013672	-	76	86.970	ENSMMOG00000012265	-	100	86.970	Mola_mola
ENSORLG00015013672	-	68	57.229	ENSMODG00000003189	-	100	58.434	Monodelphis_domestica
ENSORLG00015013672	-	71	92.233	ENSMALG00000001426	-	100	92.378	Monopterus_albus
ENSORLG00015013672	-	71	98.854	ENSMALG00000017889	MSI1	100	98.854	Monopterus_albus
ENSORLG00015013672	-	76	80.939	MGP_CAROLIEiJ_G0027626	Msi1	98	89.354	Mus_caroli
ENSORLG00015013672	-	76	80.939	ENSMUSG00000054256	Msi1	98	89.354	Mus_musculus
ENSORLG00015013672	-	76	83.191	MGP_PahariEiJ_G0024206	Msi1	98	88.973	Mus_pahari
ENSORLG00015013672	-	76	80.939	MGP_SPRETEiJ_G0028624	Msi1	98	89.354	Mus_spretus
ENSORLG00015013672	-	71	82.315	ENSMPUG00000003168	MSI1	100	86.174	Mustela_putorius_furo
ENSORLG00015013672	-	71	73.214	ENSMLUG00000010313	MSI1	100	76.786	Myotis_lucifugus
ENSORLG00015013672	-	71	81.763	ENSNGAG00000014508	Msi1	91	85.410	Nannospalax_galili
ENSORLG00015013672	-	76	99.091	ENSNBRG00000000841	-	100	99.140	Neolamprologus_brichardi
ENSORLG00015013672	-	62	87.342	ENSNBRG00000018012	MSI1	97	87.342	Neolamprologus_brichardi
ENSORLG00015013672	-	68	72.256	ENSNLEG00000015636	MSI1	100	75.915	Nomascus_leucogenys
ENSORLG00015013672	-	71	61.585	ENSMEUG00000015759	MSI1	100	65.244	Notamacropus_eugenii
ENSORLG00015013672	-	68	74.603	ENSOPRG00000016879	MSI1	100	78.413	Ochotona_princeps
ENSORLG00015013672	-	71	81.707	ENSODEG00000006328	MSI1	100	85.366	Octodon_degus
ENSORLG00015013672	-	76	84.615	ENSONIG00000019452	-	100	89.286	Oreochromis_niloticus
ENSORLG00015013672	-	76	98.529	ENSONIG00000011182	MSI1	100	99.140	Oreochromis_niloticus
ENSORLG00015013672	-	71	82.315	ENSOCUG00000027716	MSI1	100	86.174	Oryctolagus_cuniculus
ENSORLG00015013672	-	76	86.040	ENSORLG00000029593	MSI1	100	90.883	Oryzias_latipes
ENSORLG00015013672	-	71	100.000	ENSORLG00000019978	-	100	100.000	Oryzias_latipes
ENSORLG00015013672	-	72	90.566	ENSORLG00020008266	MSI1	99	92.258	Oryzias_latipes_hni
ENSORLG00015013672	-	100	98.778	ENSORLG00020001208	-	100	98.778	Oryzias_latipes_hni
ENSORLG00015013672	-	76	86.325	ENSOMEG00000002272	-	100	91.168	Oryzias_melastigma
ENSORLG00015013672	-	71	99.713	ENSOMEG00000017536	MSI1	100	99.713	Oryzias_melastigma
ENSORLG00015013672	-	75	78.846	ENSOGAG00000003847	MSI1	99	82.143	Otolemur_garnettii
ENSORLG00015013672	-	71	78.788	ENSOARG00000012097	MSI1	100	82.424	Ovis_aries
ENSORLG00015013672	-	71	81.707	ENSPPAG00000043073	MSI1	100	85.366	Pan_paniscus
ENSORLG00015013672	-	76	81.215	ENSPPRG00000000370	MSI1	100	84.530	Panthera_pardus
ENSORLG00015013672	-	71	82.315	ENSPTIG00000008913	MSI1	100	86.174	Panthera_tigris_altaica
ENSORLG00015013672	-	76	83.239	ENSPTRG00000005531	MSI1	100	84.530	Pan_troglodytes
ENSORLG00015013672	-	76	80.939	ENSPANG00000006335	MSI1	100	84.254	Papio_anubis
ENSORLG00015013672	-	76	93.333	ENSPKIG00000016497	MSI1	100	93.333	Paramormyrops_kingsleyae
ENSORLG00015013672	-	71	93.123	ENSPKIG00000023575	-	100	93.123	Paramormyrops_kingsleyae
ENSORLG00015013672	-	71	82.371	ENSPSIG00000011608	-	93	86.018	Pelodiscus_sinensis
ENSORLG00015013672	-	56	80.786	ENSPSIG00000009621	-	100	80.786	Pelodiscus_sinensis
ENSORLG00015013672	-	68	99.327	ENSPMGG00000000514	MSI1	97	99.327	Periophthalmus_magnuspinnatus
ENSORLG00015013672	-	71	74.242	ENSPMGG00000007743	-	98	67.868	Periophthalmus_magnuspinnatus
ENSORLG00015013672	-	71	80.415	ENSPEMG00000010491	Msi1	95	83.976	Peromyscus_maniculatus_bairdii
ENSORLG00015013672	-	71	100.000	ENSPFOG00000013113	MSI1	100	99.427	Poecilia_formosa
ENSORLG00015013672	-	79	84.384	ENSPFOG00000008319	-	89	89.041	Poecilia_formosa
ENSORLG00015013672	-	71	99.427	ENSPLAG00000014025	-	100	99.427	Poecilia_latipinna
ENSORLG00015013672	-	79	84.384	ENSPLAG00000012431	-	99	89.256	Poecilia_latipinna
ENSORLG00015013672	-	76	99.394	ENSPMEG00000012796	MSI1	100	99.427	Poecilia_mexicana
ENSORLG00015013672	-	79	83.836	ENSPMEG00000007025	-	93	85.623	Poecilia_mexicana
ENSORLG00015013672	-	57	95.050	ENSPREG00000014574	-	100	95.050	Poecilia_reticulata
ENSORLG00015013672	-	74	87.616	ENSPREG00000021416	-	95	89.809	Poecilia_reticulata
ENSORLG00015013672	-	76	80.387	ENSPPYG00000005027	MSI1	100	83.702	Pongo_abelii
ENSORLG00015013672	-	54	90.355	ENSPCAG00000002300	MSI1	72	90.355	Procavia_capensis
ENSORLG00015013672	-	76	82.073	ENSPCOG00000017341	MSI1	100	84.530	Propithecus_coquereli
ENSORLG00015013672	-	71	66.566	ENSPVAG00000002225	MSI1	100	69.817	Pteropus_vampyrus
ENSORLG00015013672	-	76	87.749	ENSPNYG00000004379	MSI1	100	92.593	Pundamilia_nyererei
ENSORLG00015013672	-	71	99.140	ENSPNYG00000002529	-	100	99.140	Pundamilia_nyererei
ENSORLG00015013672	-	76	88.589	ENSPNAG00000019337	msi1	100	93.123	Pygocentrus_nattereri
ENSORLG00015013672	-	71	81.994	ENSRNOG00000001156	Msi1	100	85.852	Rattus_norvegicus
ENSORLG00015013672	-	71	82.315	ENSRBIG00000036889	MSI1	100	86.174	Rhinopithecus_bieti
ENSORLG00015013672	-	71	81.515	ENSRROG00000041076	MSI1	93	85.152	Rhinopithecus_roxellana
ENSORLG00015013672	-	71	82.456	ENSSBOG00000030259	MSI1	99	85.965	Saimiri_boliviensis_boliviensis
ENSORLG00015013672	-	71	72.222	ENSSHAG00000006834	MSI1	100	76.144	Sarcophilus_harrisii
ENSORLG00015013672	-	71	90.236	ENSSFOG00015014964	-	95	94.225	Scleropages_formosus
ENSORLG00015013672	-	71	94.498	ENSSFOG00015005350	MSI1	100	94.498	Scleropages_formosus
ENSORLG00015013672	-	67	92.748	ENSSMAG00000009156	-	73	91.133	Scophthalmus_maximus
ENSORLG00015013672	-	76	91.212	ENSSMAG00000018824	MSI1	100	91.212	Scophthalmus_maximus
ENSORLG00015013672	-	71	99.140	ENSSDUG00000001027	MSI1	100	99.140	Seriola_dumerili
ENSORLG00015013672	-	76	87.464	ENSSDUG00000022697	-	100	92.308	Seriola_dumerili
ENSORLG00015013672	-	76	83.382	ENSSLDG00000018706	-	100	83.382	Seriola_lalandi_dorsalis
ENSORLG00015013672	-	76	99.091	ENSSLDG00000016832	MSI1	100	99.140	Seriola_lalandi_dorsalis
ENSORLG00015013672	-	76	84.330	ENSSPUG00000015741	MSI1	100	87.749	Sphenodon_punctatus
ENSORLG00015013672	-	71	93.871	ENSSPAG00000013098	-	100	93.598	Stegastes_partitus
ENSORLG00015013672	-	57	88.542	ENSSPAG00000014085	-	100	88.542	Stegastes_partitus
ENSORLG00015013672	-	76	85.423	ENSSSCG00000029365	MSI1	100	85.852	Sus_scrofa
ENSORLG00015013672	-	71	83.529	ENSTGUG00000009534	MSI1	100	87.059	Taeniopygia_guttata
ENSORLG00015013672	-	63	87.402	ENSTRUG00000016249	MSI1	100	87.402	Takifugu_rubripes
ENSORLG00015013672	-	71	85.859	ENSTRUG00000015636	-	79	85.859	Takifugu_rubripes
ENSORLG00015013672	-	71	93.750	ENSTNIG00000011469	MSI1	100	93.750	Tetraodon_nigroviridis
ENSORLG00015013672	-	75	65.964	ENSTNIG00000019814	-	99	65.964	Tetraodon_nigroviridis
ENSORLG00015013672	-	71	71.533	ENSTBEG00000007182	MSI1	100	75.458	Tupaia_belangeri
ENSORLG00015013672	-	54	89.850	ENSTTRG00000005663	MSI1	78	89.850	Tursiops_truncatus
ENSORLG00015013672	-	57	85.780	ENSUAMG00000015514	MSI1	94	88.426	Ursus_americanus
ENSORLG00015013672	-	71	83.557	ENSUMAG00000006176	MSI1	88	83.557	Ursus_maritimus
ENSORLG00015013672	-	71	83.025	ENSVVUG00000020993	MSI1	100	84.685	Vulpes_vulpes
ENSORLG00015013672	-	76	82.235	ENSXETG00000012216	msi1	100	86.246	Xenopus_tropicalis
ENSORLG00015013672	-	71	79.677	ENSXCOG00000017605	MSI1	89	79.677	Xiphophorus_couchianus
ENSORLG00015013672	-	73	98.596	ENSXMAG00000027103	MSI1	100	90.801	Xiphophorus_maculatus
ENSORLG00015013672	-	71	92.581	ENSXMAG00000018237	-	100	91.168	Xiphophorus_maculatus