EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015013815 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 5012 bases
Position: chr4:12404327-12409338
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015012894	RRM_1	PF00076.22	6e-56	1	4
ENSORLP00015012894	RRM_1	PF00076.22	6e-56	2	4
ENSORLP00015012894	RRM_1	PF00076.22	6e-56	3	4
ENSORLP00015012894	RRM_1	PF00076.22	6e-56	4	4
ENSORLP00015012917	RRM_1	PF00076.22	3e-48	1	4
ENSORLP00015012917	RRM_1	PF00076.22	3e-48	2	4
ENSORLP00015012917	RRM_1	PF00076.22	3e-48	3	4
ENSORLP00015012917	RRM_1	PF00076.22	3e-48	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015020154	-	1992	-	ENSORLP00015012917	663 (aa)	-	-
ENSORLT00015020138	-	1077	-	ENSORLP00015012894	358 (aa)	-	-

Gene Model

Click here to download ENSORLG00015013815's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015013815's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015013815	ncl	85	32.386	ENSORLG00015017018	pabpc1l	63	30.286
ENSORLG00015013815	ncl	89	37.910	ENSORLG00015006613	-	77	37.209
ENSORLG00015013815	ncl	85	32.530	ENSORLG00015013633	pabpc1	55	30.303

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015013815	ncl	93	41.690	ENSAPOG00000014534	-	67	42.119	Acanthochromis_polyacanthus
ENSORLG00015013815	ncl	87	85.294	ENSAPOG00000023888	ncl	59	80.714	Acanthochromis_polyacanthus
ENSORLG00015013815	ncl	86	79.612	ENSACIG00000013234	ncl	63	75.798	Amphilophus_citrinellus
ENSORLG00015013815	ncl	93	38.873	ENSAOCG00000014792	-	61	40.979	Amphiprion_ocellaris
ENSORLG00015013815	ncl	87	86.275	ENSAOCG00000003133	ncl	60	80.569	Amphiprion_ocellaris
ENSORLG00015013815	ncl	87	86.275	ENSAPEG00000002769	ncl	59	80.760	Amphiprion_percula
ENSORLG00015013815	ncl	93	39.155	ENSAPEG00000013612	-	61	41.237	Amphiprion_percula
ENSORLG00015013815	ncl	87	84.967	ENSATEG00000013343	ncl	60	80.714	Anabas_testudineus
ENSORLG00015013815	ncl	94	42.424	ENSATEG00000019862	-	80	44.072	Anabas_testudineus
ENSORLG00015013815	ncl	87	60.125	ENSAPLG00000012897	-	58	59.677	Anas_platyrhynchos
ENSORLG00015013815	ncl	85	64.952	ENSACAG00000001006	-	50	64.516	Anolis_carolinensis
ENSORLG00015013815	ncl	86	75.241	ENSACLG00000026031	ncl	84	74.920	Astatotilapia_calliptera
ENSORLG00015013815	ncl	84	71.475	ENSAMXG00000001647	ncl	81	71.667	Astyanax_mexicanus
ENSORLG00015013815	ncl	84	42.071	ENSCHIG00000012665	-	52	42.122	Capra_hircus
ENSORLG00015013815	ncl	85	49.107	ENSCHIG00000003401	-	54	47.748	Capra_hircus
ENSORLG00015013815	ncl	87	64.630	ENSCPBG00000016444	-	55	60.218	Chrysemys_picta_bellii
ENSORLG00015013815	ncl	88	80.625	ENSCSEG00000015089	ncl	55	78.851	Cynoglossus_semilaevis
ENSORLG00015013815	ncl	86	82.051	ENSCVAG00000012600	ncl	61	76.259	Cyprinodon_variegatus
ENSORLG00015013815	ncl	87	77.049	ENSDARG00000002710	ncl	81	75.796	Danio_rerio
ENSORLG00015013815	ncl	86	47.335	ENSDNOG00000040257	-	53	46.395	Dasypus_novemcinctus
ENSORLG00015013815	ncl	86	45.484	ENSDNOG00000031611	-	61	46.291	Dasypus_novemcinctus
ENSORLG00015013815	ncl	65	53.691	ENSDNOG00000040440	-	95	52.448	Dasypus_novemcinctus
ENSORLG00015013815	ncl	90	51.163	ENSEBUG00000016173	ncl	50	48.303	Eptatretus_burgeri
ENSORLG00015013815	ncl	88	50.000	ENSELUG00000022826	-	80	48.925	Esox_lucius
ENSORLG00015013815	ncl	87	74.839	ENSELUG00000006033	ncl	56	73.280	Esox_lucius
ENSORLG00015013815	ncl	87	80.528	ENSFHEG00000018000	ncl	61	80.528	Fundulus_heteroclitus
ENSORLG00015013815	ncl	87	69.775	ENSGMOG00000001341	ncl	81	62.209	Gadus_morhua
ENSORLG00015013815	ncl	87	61.935	ENSGALG00000032930	NCL	51	61.290	Gallus_gallus
ENSORLG00015013815	ncl	88	84.295	ENSGAFG00000015375	ncl	58	79.059	Gambusia_affinis
ENSORLG00015013815	ncl	84	80.392	ENSGACG00000008970	ncl	66	72.947	Gasterosteus_aculeatus
ENSORLG00015013815	ncl	85	77.451	ENSHBUG00000006869	ncl	51	77.778	Haplochromis_burtoni
ENSORLG00015013815	ncl	85	82.623	ENSHCOG00000010234	ncl	83	67.960	Hippocampus_comes
ENSORLG00015013815	ncl	86	71.565	ENSIPUG00000024556	ncl	80	70.288	Ictalurus_punctatus
ENSORLG00015013815	ncl	88	86.275	ENSKMAG00000008111	ncl	59	80.723	Kryptolebias_marmoratus
ENSORLG00015013815	ncl	87	85.256	ENSLBEG00000019073	ncl	63	78.774	Labrus_bergylta
ENSORLG00015013815	ncl	87	43.505	ENSLBEG00000007915	-	65	43.264	Labrus_bergylta
ENSORLG00015013815	ncl	87	43.505	ENSLBEG00000014278	-	82	42.424	Labrus_bergylta
ENSORLG00015013815	ncl	85	52.381	ENSLACG00000022167	-	76	50.281	Latimeria_chalumnae
ENSORLG00015013815	ncl	89	67.203	ENSLACG00000009328	ncl	71	59.390	Latimeria_chalumnae
ENSORLG00015013815	ncl	94	39.266	ENSMAMG00000003479	-	69	39.426	Mastacembelus_armatus
ENSORLG00015013815	ncl	89	84.211	ENSMAMG00000002086	ncl	52	79.108	Mastacembelus_armatus
ENSORLG00015013815	ncl	86	78.526	ENSMZEG00005017438	ncl	50	76.923	Maylandia_zebra
ENSORLG00015013815	ncl	87	61.290	ENSMGAG00000008147	-	81	58.405	Meleagris_gallopavo
ENSORLG00015013815	ncl	88	84.127	ENSMMOG00000008553	ncl	85	84.127	Mola_mola
ENSORLG00015013815	ncl	89	58.991	ENSMODG00000002470	-	54	55.497	Monodelphis_domestica
ENSORLG00015013815	ncl	88	82.624	ENSMALG00000014827	ncl	59	78.030	Monopterus_albus
ENSORLG00015013815	ncl	86	44.403	ENSMPUG00000001663	-	57	45.455	Mustela_putorius_furo
ENSORLG00015013815	ncl	86	78.472	ENSNBRG00000000146	-	84	76.736	Neolamprologus_brichardi
ENSORLG00015013815	ncl	79	78.472	ENSNBRG00000001232	ncl	81	76.736	Neolamprologus_brichardi
ENSORLG00015013815	ncl	89	61.613	ENSMEUG00000012335	-	51	61.538	Notamacropus_eugenii
ENSORLG00015013815	ncl	85	77.451	ENSONIG00000012508	ncl	85	66.309	Oreochromis_niloticus
ENSORLG00015013815	ncl	55	42.077	ENSONIG00000010631	-	97	42.265	Oreochromis_niloticus
ENSORLG00015013815	ncl	87	61.859	ENSOANG00000008732	-	55	62.500	Ornithorhynchus_anatinus
ENSORLG00015013815	ncl	98	93.103	ENSORLG00000007055	ncl	71	95.227	Oryzias_latipes
ENSORLG00015013815	ncl	89	37.612	ENSORLG00000004645	-	83	36.951	Oryzias_latipes
ENSORLG00015013815	ncl	98	93.103	ENSORLG00020017943	ncl	71	94.749	Oryzias_latipes_hni
ENSORLG00015013815	ncl	89	37.612	ENSORLG00020003497	-	74	36.693	Oryzias_latipes_hni
ENSORLG00015013815	ncl	89	37.870	ENSOMEG00000015864	-	81	37.958	Oryzias_melastigma
ENSORLG00015013815	ncl	87	91.987	ENSOMEG00000020786	ncl	69	80.545	Oryzias_melastigma
ENSORLG00015013815	ncl	87	80.195	ENSPKIG00000002604	ncl	83	66.610	Paramormyrops_kingsleyae
ENSORLG00015013815	ncl	89	62.300	ENSPSIG00000002361	-	63	54.000	Pelodiscus_sinensis
ENSORLG00015013815	ncl	98	72.527	ENSPMGG00000004709	ncl	81	78.275	Periophthalmus_magnuspinnatus
ENSORLG00015013815	ncl	85	51.685	ENSPMAG00000003855	ncl	57	40.141	Petromyzon_marinus
ENSORLG00015013815	ncl	90	59.937	ENSPCIG00000003293	-	50	60.502	Phascolarctos_cinereus
ENSORLG00015013815	ncl	86	83.654	ENSPFOG00000024205	ncl	57	77.435	Poecilia_formosa
ENSORLG00015013815	ncl	86	83.654	ENSPLAG00000024026	ncl	58	78.824	Poecilia_latipinna
ENSORLG00015013815	ncl	87	78.797	ENSPNYG00000020494	ncl	51	77.215	Pundamilia_nyererei
ENSORLG00015013815	ncl	84	71.197	ENSPNAG00000006192	ncl	58	66.745	Pygocentrus_nattereri
ENSORLG00015013815	ncl	89	53.125	ENSSHAG00000007489	-	56	44.551	Sarcophilus_harrisii
ENSORLG00015013815	ncl	89	56.090	ENSSHAG00000002702	-	59	52.742	Sarcophilus_harrisii
ENSORLG00015013815	ncl	96	44.669	ENSSFOG00015013153	-	92	45.928	Scleropages_formosus
ENSORLG00015013815	ncl	98	75.843	ENSSFOG00015008583	ncl	69	69.663	Scleropages_formosus
ENSORLG00015013815	ncl	86	83.810	ENSSMAG00000021241	ncl	83	70.658	Scophthalmus_maximus
ENSORLG00015013815	ncl	88	41.994	ENSSMAG00000007582	-	61	43.717	Scophthalmus_maximus
ENSORLG00015013815	ncl	90	42.353	ENSSDUG00000010922	-	70	42.078	Seriola_dumerili
ENSORLG00015013815	ncl	98	82.865	ENSSDUG00000006128	ncl	91	83.427	Seriola_dumerili
ENSORLG00015013815	ncl	86	85.256	ENSSLDG00000002012	ncl	60	80.861	Seriola_lalandi_dorsalis
ENSORLG00015013815	ncl	90	42.308	ENSSLDG00000015784	-	66	42.268	Seriola_lalandi_dorsalis
ENSORLG00015013815	ncl	87	61.610	ENSSPUG00000008244	-	61	58.376	Sphenodon_punctatus
ENSORLG00015013815	ncl	78	86.170	ENSSPAG00000002637	ncl	79	86.170	Stegastes_partitus
ENSORLG00015013815	ncl	93	41.954	ENSSPAG00000001859	-	61	43.386	Stegastes_partitus
ENSORLG00015013815	ncl	85	59.554	ENSTGUG00000009782	-	57	55.914	Taeniopygia_guttata
ENSORLG00015013815	ncl	87	81.046	ENSTRUG00000008185	ncl	53	79.456	Takifugu_rubripes
ENSORLG00015013815	ncl	88	79.934	ENSTNIG00000012186	ncl	61	79.739	Tetraodon_nigroviridis
ENSORLG00015013815	ncl	85	61.415	ENSXETG00000009517	ncl	54	58.311	Xenopus_tropicalis
ENSORLG00015013815	ncl	89	38.138	ENSXCOG00000007369	-	89	41.470	Xiphophorus_couchianus
ENSORLG00015013815	ncl	99	66.479	ENSXCOG00000003524	ncl	99	64.738	Xiphophorus_couchianus
ENSORLG00015013815	ncl	88	86.538	ENSXMAG00000005914	ncl	58	79.907	Xiphophorus_maculatus