EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015016071 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 25662 bases
Position: chr10:27186651-27212312
Accession: ZDB-GENE-030131-5286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015015165	RNA_pol_Rpb1_5	PF04998.17	5.8e-99	1	1
ENSORLP00015015165	RNA_pol_Rpb1_4	PF05000.17	2.4e-21	1	1
ENSORLP00015015165	RNA_pol_Rpb1_2	PF00623.20	7.6e-69	1	1
ENSORLP00015015165	RNA_pol_Rpb1_3	PF04983.18	3.6e-34	1	1
ENSORLP00015015165	RNA_pol_Rpb1_1	PF04997.12	1.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015022947	-	4791	-	ENSORLP00015015165	1596 (aa)	-	-

Gene Model

Click here to download ENSORLG00015016071's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015016071's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015016071	polr1a	69	34.091	ENSORLG00015007075	polr2a	56	34.524
ENSORLG00015016071	polr1a	83	31.757	ENSORLG00015006633	polr3a	88	31.757

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015016071	polr1a	99	74.444	ENSG00000068654	POLR1A	96	74.468	Homo_sapiens
ENSORLG00015016071	polr1a	66	88.298	ENSAPOG00000017945	polr1a	93	88.298	Acanthochromis_polyacanthus
ENSORLG00015016071	polr1a	99	74.444	ENSAMEG00000005807	POLR1A	96	74.468	Ailuropoda_melanoleuca
ENSORLG00015016071	polr1a	98	89.362	ENSACIG00000022147	polr1a	100	76.467	Amphilophus_citrinellus
ENSORLG00015016071	polr1a	98	88.298	ENSAOCG00000017336	polr1a	95	88.298	Amphiprion_ocellaris
ENSORLG00015016071	polr1a	98	88.298	ENSAPEG00000016105	polr1a	95	88.298	Amphiprion_percula
ENSORLG00015016071	polr1a	98	87.234	ENSATEG00000016773	polr1a	95	87.234	Anabas_testudineus
ENSORLG00015016071	polr1a	89	65.677	ENSAPLG00000013871	POLR1A	98	65.813	Anas_platyrhynchos
ENSORLG00015016071	polr1a	99	59.860	ENSACAG00000012141	POLR1A	99	59.860	Anolis_carolinensis
ENSORLG00015016071	polr1a	99	76.667	ENSANAG00000033927	POLR1A	96	76.596	Aotus_nancymaae
ENSORLG00015016071	polr1a	99	75.638	ENSACLG00000020541	polr1a	100	75.699	Astatotilapia_calliptera
ENSORLG00015016071	polr1a	98	73.333	ENSBTAG00000006481	POLR1A	95	73.404	Bos_taurus
ENSORLG00015016071	polr1a	96	40.761	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSORLG00015016071	polr1a	98	76.667	ENSCJAG00000019547	POLR1A	95	76.596	Callithrix_jacchus
ENSORLG00015016071	polr1a	98	75.556	ENSCAFG00000007613	POLR1A	95	75.532	Canis_familiaris
ENSORLG00015016071	polr1a	99	75.556	ENSCAFG00020014752	POLR1A	96	75.532	Canis_lupus_dingo
ENSORLG00015016071	polr1a	99	73.333	ENSCHIG00000018204	POLR1A	96	73.404	Capra_hircus
ENSORLG00015016071	polr1a	98	74.444	ENSTSYG00000002761	POLR1A	95	74.468	Carlito_syrichta
ENSORLG00015016071	polr1a	95	87.805	ENSCAPG00000010132	POLR1A	95	86.667	Cavia_aperea
ENSORLG00015016071	polr1a	98	76.667	ENSCPOG00000012350	POLR1A	95	76.596	Cavia_porcellus
ENSORLG00015016071	polr1a	99	76.667	ENSCCAG00000019839	POLR1A	96	76.596	Cebus_capucinus
ENSORLG00015016071	polr1a	99	75.556	ENSCATG00000029786	POLR1A	96	75.532	Cercocebus_atys
ENSORLG00015016071	polr1a	98	76.596	ENSCLAG00000005187	POLR1A	95	76.596	Chinchilla_lanigera
ENSORLG00015016071	polr1a	99	75.556	ENSCSAG00000016251	POLR1A	96	75.532	Chlorocebus_sabaeus
ENSORLG00015016071	polr1a	98	80.000	ENSCPBG00000001115	POLR1A	95	80.000	Chrysemys_picta_bellii
ENSORLG00015016071	polr1a	98	55.814	ENSCSAVG00000007184	-	95	55.814	Ciona_savignyi
ENSORLG00015016071	polr1a	99	74.444	ENSCANG00000031785	POLR1A	96	74.468	Colobus_angolensis_palliatus
ENSORLG00015016071	polr1a	96	73.333	ENSCGRG00001006651	Polr1a	97	73.404	Cricetulus_griseus_chok1gshd
ENSORLG00015016071	polr1a	63	61.127	ENSCGRG00000010834	Polr1a	100	61.733	Cricetulus_griseus_crigri
ENSORLG00015016071	polr1a	98	81.915	ENSCSEG00000020190	polr1a	94	81.915	Cynoglossus_semilaevis
ENSORLG00015016071	polr1a	98	86.170	ENSCVAG00000020941	polr1a	95	86.170	Cyprinodon_variegatus
ENSORLG00015016071	polr1a	98	76.596	ENSDARG00000098375	polr1a	100	66.765	Danio_rerio
ENSORLG00015016071	polr1a	99	72.222	ENSDNOG00000010829	POLR1A	96	72.340	Dasypus_novemcinctus
ENSORLG00015016071	polr1a	99	73.333	ENSDORG00000008298	Polr1a	96	73.404	Dipodomys_ordii
ENSORLG00015016071	polr1a	72	48.621	FBgn0019938	RpI1	87	46.988	Drosophila_melanogaster
ENSORLG00015016071	polr1a	68	90.625	ENSETEG00000000412	-	67	90.625	Echinops_telfairi
ENSORLG00015016071	polr1a	92	47.164	ENSEBUG00000005667	-	99	47.101	Eptatretus_burgeri
ENSORLG00015016071	polr1a	99	75.556	ENSEASG00005001625	POLR1A	96	75.532	Equus_asinus_asinus
ENSORLG00015016071	polr1a	99	75.556	ENSECAG00000036306	-	96	75.532	Equus_caballus
ENSORLG00015016071	polr1a	99	75.556	ENSECAG00000030510	-	96	75.532	Equus_caballus
ENSORLG00015016071	polr1a	99	75.556	ENSECAG00000010092	POLR1A	96	75.532	Equus_caballus
ENSORLG00015016071	polr1a	86	76.078	ENSEEUG00000000676	POLR1A	82	76.078	Erinaceus_europaeus
ENSORLG00015016071	polr1a	98	80.851	ENSELUG00000012769	polr1a	94	80.851	Esox_lucius
ENSORLG00015016071	polr1a	99	74.444	ENSFCAG00000008966	POLR1A	96	74.468	Felis_catus
ENSORLG00015016071	polr1a	98	61.620	ENSFALG00000010082	POLR1A	99	61.575	Ficedula_albicollis
ENSORLG00015016071	polr1a	98	76.667	ENSFDAG00000013726	POLR1A	95	76.596	Fukomys_damarensis
ENSORLG00015016071	polr1a	99	85.106	ENSFHEG00000005996	polr1a	95	85.106	Fundulus_heteroclitus
ENSORLG00015016071	polr1a	99	66.831	ENSGMOG00000002230	polr1a	100	66.892	Gadus_morhua
ENSORLG00015016071	polr1a	87	74.444	ENSGALG00000038160	-	93	74.444	Gallus_gallus
ENSORLG00015016071	polr1a	99	76.382	ENSGAFG00000015266	polr1a	100	76.022	Gambusia_affinis
ENSORLG00015016071	polr1a	98	82.222	ENSGACG00000018791	polr1a	95	81.915	Gasterosteus_aculeatus
ENSORLG00015016071	polr1a	93	64.997	ENSGAGG00000004984	-	99	64.902	Gopherus_agassizii
ENSORLG00015016071	polr1a	99	74.444	ENSGGOG00000001788	POLR1A	96	74.468	Gorilla_gorilla
ENSORLG00015016071	polr1a	88	88.298	ENSHBUG00000020021	polr1a	100	77.078	Haplochromis_burtoni
ENSORLG00015016071	polr1a	99	75.556	ENSHGLG00000006334	POLR1A	96	74.468	Heterocephalus_glaber_female
ENSORLG00015016071	polr1a	99	75.556	ENSHGLG00100006614	POLR1A	96	74.468	Heterocephalus_glaber_male
ENSORLG00015016071	polr1a	99	74.178	ENSHCOG00000003345	polr1a	100	74.239	Hippocampus_comes
ENSORLG00015016071	polr1a	98	74.468	ENSIPUG00000013174	polr1a	95	74.468	Ictalurus_punctatus
ENSORLG00015016071	polr1a	99	74.444	ENSSTOG00000012580	POLR1A	96	74.468	Ictidomys_tridecemlineatus
ENSORLG00015016071	polr1a	99	74.444	ENSJJAG00000013113	Polr1a	96	74.468	Jaculus_jaculus
ENSORLG00015016071	polr1a	98	88.298	ENSKMAG00000007399	polr1a	95	88.298	Kryptolebias_marmoratus
ENSORLG00015016071	polr1a	99	74.849	ENSLBEG00000015401	polr1a	100	74.849	Labrus_bergylta
ENSORLG00015016071	polr1a	99	78.723	ENSLOCG00000010881	polr1a	96	78.723	Lepisosteus_oculatus
ENSORLG00015016071	polr1a	98	75.556	ENSLAFG00000014948	POLR1A	95	75.532	Loxodonta_africana
ENSORLG00015016071	polr1a	99	75.556	ENSMFAG00000046097	POLR1A	96	75.532	Macaca_fascicularis
ENSORLG00015016071	polr1a	99	75.556	ENSMMUG00000015815	POLR1A	96	75.532	Macaca_mulatta
ENSORLG00015016071	polr1a	99	75.556	ENSMNEG00000043313	POLR1A	96	75.532	Macaca_nemestrina
ENSORLG00015016071	polr1a	99	75.556	ENSMLEG00000042428	POLR1A	96	75.532	Mandrillus_leucophaeus
ENSORLG00015016071	polr1a	98	85.106	ENSMAMG00000016565	polr1a	95	85.106	Mastacembelus_armatus
ENSORLG00015016071	polr1a	98	88.298	ENSMZEG00005004915	polr1a	95	88.298	Maylandia_zebra
ENSORLG00015016071	polr1a	98	74.444	ENSMGAG00000013111	POLR1A	95	74.444	Meleagris_gallopavo
ENSORLG00015016071	polr1a	94	62.555	ENSMAUG00000008497	Polr1a	99	62.689	Mesocricetus_auratus
ENSORLG00015016071	polr1a	99	75.556	ENSMICG00000000757	POLR1A	96	75.532	Microcebus_murinus
ENSORLG00015016071	polr1a	99	74.444	ENSMOCG00000000122	Polr1a	96	74.468	Microtus_ochrogaster
ENSORLG00015016071	polr1a	98	89.362	ENSMMOG00000010216	polr1a	95	89.362	Mola_mola
ENSORLG00015016071	polr1a	99	71.875	ENSMODG00000009335	POLR1A	95	71.875	Monodelphis_domestica
ENSORLG00015016071	polr1a	98	88.298	ENSMALG00000013363	polr1a	95	88.298	Monopterus_albus
ENSORLG00015016071	polr1a	99	72.340	MGP_CAROLIEiJ_G0028494	Polr1a	96	72.340	Mus_caroli
ENSORLG00015016071	polr1a	99	71.277	ENSMUSG00000049553	Polr1a	96	71.277	Mus_musculus
ENSORLG00015016071	polr1a	99	73.333	MGP_PahariEiJ_G0022230	Polr1a	96	73.404	Mus_pahari
ENSORLG00015016071	polr1a	99	71.277	MGP_SPRETEiJ_G0029499	Polr1a	96	71.277	Mus_spretus
ENSORLG00015016071	polr1a	99	74.444	ENSMPUG00000009135	POLR1A	96	74.468	Mustela_putorius_furo
ENSORLG00015016071	polr1a	99	75.556	ENSMLUG00000015723	POLR1A	96	75.532	Myotis_lucifugus
ENSORLG00015016071	polr1a	99	73.333	ENSNGAG00000017907	Polr1a	96	73.404	Nannospalax_galili
ENSORLG00015016071	polr1a	98	88.298	ENSNBRG00000000519	polr1a	95	88.298	Neolamprologus_brichardi
ENSORLG00015016071	polr1a	99	74.444	ENSNLEG00000002264	POLR1A	96	74.468	Nomascus_leucogenys
ENSORLG00015016071	polr1a	72	85.039	ENSMEUG00000011665	-	70	85.039	Notamacropus_eugenii
ENSORLG00015016071	polr1a	98	74.468	ENSOPRG00000008269	POLR1A	96	74.468	Ochotona_princeps
ENSORLG00015016071	polr1a	98	74.468	ENSODEG00000003542	POLR1A	95	74.468	Octodon_degus
ENSORLG00015016071	polr1a	98	88.298	ENSONIG00000015895	polr1a	95	88.298	Oreochromis_niloticus
ENSORLG00015016071	polr1a	99	61.874	ENSOCUG00000010138	POLR1A	100	61.838	Oryctolagus_cuniculus
ENSORLG00015016071	polr1a	99	98.936	ENSORLG00000008753	polr1a	95	98.936	Oryzias_latipes
ENSORLG00015016071	polr1a	99	100.000	ENSORLG00020020726	polr1a	96	100.000	Oryzias_latipes_hni
ENSORLG00015016071	polr1a	98	74.444	ENSOGAG00000004031	POLR1A	95	74.468	Otolemur_garnettii
ENSORLG00015016071	polr1a	99	73.333	ENSOARG00000020601	POLR1A	96	73.404	Ovis_aries
ENSORLG00015016071	polr1a	99	74.444	ENSPPAG00000042450	POLR1A	96	74.468	Pan_paniscus
ENSORLG00015016071	polr1a	99	74.444	ENSPPRG00000006702	POLR1A	96	74.468	Panthera_pardus
ENSORLG00015016071	polr1a	99	74.444	ENSPTIG00000018783	POLR1A	96	74.468	Panthera_tigris_altaica
ENSORLG00015016071	polr1a	99	74.444	ENSPTRG00000012147	POLR1A	96	74.468	Pan_troglodytes
ENSORLG00015016071	polr1a	99	75.556	ENSPANG00000025908	POLR1A	96	75.532	Papio_anubis
ENSORLG00015016071	polr1a	98	78.723	ENSPKIG00000005468	polr1a	95	78.723	Paramormyrops_kingsleyae
ENSORLG00015016071	polr1a	67	62.338	ENSPSIG00000009321	-	99	62.245	Pelodiscus_sinensis
ENSORLG00015016071	polr1a	52	75.727	ENSPMGG00000009718	polr1a	95	75.727	Periophthalmus_magnuspinnatus
ENSORLG00015016071	polr1a	99	74.444	ENSPEMG00000022224	Polr1a	96	74.468	Peromyscus_maniculatus_bairdii
ENSORLG00015016071	polr1a	93	74.468	ENSPCIG00000004222	POLR1A	94	74.468	Phascolarctos_cinereus
ENSORLG00015016071	polr1a	98	86.170	ENSPFOG00000005025	polr1a	95	86.170	Poecilia_formosa
ENSORLG00015016071	polr1a	98	86.170	ENSPLAG00000021389	polr1a	95	86.170	Poecilia_latipinna
ENSORLG00015016071	polr1a	98	86.170	ENSPMEG00000006463	polr1a	95	86.170	Poecilia_mexicana
ENSORLG00015016071	polr1a	98	86.170	ENSPREG00000002389	polr1a	95	86.170	Poecilia_reticulata
ENSORLG00015016071	polr1a	99	73.333	ENSPPYG00000012217	POLR1A	96	73.404	Pongo_abelii
ENSORLG00015016071	polr1a	88	66.667	ENSPCAG00000011582	POLR1A	86	67.143	Procavia_capensis
ENSORLG00015016071	polr1a	99	75.556	ENSPCOG00000026987	POLR1A	96	75.532	Propithecus_coquereli
ENSORLG00015016071	polr1a	93	73.333	ENSPVAG00000012674	POLR1A	88	73.404	Pteropus_vampyrus
ENSORLG00015016071	polr1a	98	88.298	ENSPNYG00000000026	polr1a	95	88.298	Pundamilia_nyererei
ENSORLG00015016071	polr1a	98	73.404	ENSPNAG00000019223	polr1a	95	73.404	Pygocentrus_nattereri
ENSORLG00015016071	polr1a	99	72.222	ENSRNOG00000009545	Polr1a	96	72.340	Rattus_norvegicus
ENSORLG00015016071	polr1a	98	75.556	ENSRBIG00000028335	POLR1A	95	75.532	Rhinopithecus_bieti
ENSORLG00015016071	polr1a	98	75.556	ENSRROG00000031473	POLR1A	95	75.532	Rhinopithecus_roxellana
ENSORLG00015016071	polr1a	93	56.627	YOR341W	RPA190	84	56.627	Saccharomyces_cerevisiae
ENSORLG00015016071	polr1a	99	76.667	ENSSBOG00000030262	POLR1A	96	76.596	Saimiri_boliviensis_boliviensis
ENSORLG00015016071	polr1a	99	56.642	ENSSHAG00000014739	POLR1A	100	56.912	Sarcophilus_harrisii
ENSORLG00015016071	polr1a	99	80.851	ENSSFOG00015019716	polr1a	95	80.851	Scleropages_formosus
ENSORLG00015016071	polr1a	98	89.362	ENSSMAG00000014342	polr1a	95	89.362	Scophthalmus_maximus
ENSORLG00015016071	polr1a	98	90.426	ENSSDUG00000014631	polr1a	95	90.426	Seriola_dumerili
ENSORLG00015016071	polr1a	99	88.298	ENSSLDG00000024095	polr1a	96	88.298	Seriola_lalandi_dorsalis
ENSORLG00015016071	polr1a	67	97.561	ENSSARG00000003136	-	66	97.561	Sorex_araneus
ENSORLG00015016071	polr1a	98	77.660	ENSSPUG00000004215	POLR1A	95	77.660	Sphenodon_punctatus
ENSORLG00015016071	polr1a	66	82.979	ENSSPAG00000016341	polr1a	93	82.979	Stegastes_partitus
ENSORLG00015016071	polr1a	80	75.556	ENSSSCG00000008226	POLR1A	94	75.532	Sus_scrofa
ENSORLG00015016071	polr1a	97	77.143	ENSTGUG00000010704	POLR1A	95	77.143	Taeniopygia_guttata
ENSORLG00015016071	polr1a	98	87.234	ENSTRUG00000002210	polr1a	95	87.234	Takifugu_rubripes
ENSORLG00015016071	polr1a	98	85.106	ENSTNIG00000010116	polr1a	95	85.106	Tetraodon_nigroviridis
ENSORLG00015016071	polr1a	69	82.743	ENSTBEG00000008646	POLR1A	66	82.743	Tupaia_belangeri
ENSORLG00015016071	polr1a	99	74.444	ENSTTRG00000008597	POLR1A	96	73.404	Tursiops_truncatus
ENSORLG00015016071	polr1a	73	64.576	ENSUAMG00000012158	-	94	64.153	Ursus_americanus
ENSORLG00015016071	polr1a	98	73.333	ENSUMAG00000006700	POLR1A	95	73.404	Ursus_maritimus
ENSORLG00015016071	polr1a	98	75.556	ENSVVUG00000001245	POLR1A	95	75.532	Vulpes_vulpes
ENSORLG00015016071	polr1a	98	78.723	ENSXETG00000001952	polr1a	94	78.723	Xenopus_tropicalis
ENSORLG00015016071	polr1a	98	86.170	ENSXMAG00000004032	polr1a	95	86.170	Xiphophorus_maculatus