EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015016725 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 11962 bases
Position: chr12:28113293-28125254
Accession: ZDB-GENE-030131-7120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015032093	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015023772	-	3129	-	ENSORLP00015032093	1042 (aa)	-	-

Gene Model

Click here to download ENSORLG00015016725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015016725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015016725	chd1	51	41.176	ENSORLG00015017210	smarca5	51	41.324

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015016725	chd1	93	77.223	ENSG00000153922	CHD1	59	76.794	Homo_sapiens
ENSORLG00015016725	chd1	76	88.835	ENSAPOG00000005764	chd1	68	91.321	Acanthochromis_polyacanthus
ENSORLG00015016725	chd1	83	87.868	ENSAOCG00000023105	chd1	56	87.868	Amphiprion_ocellaris
ENSORLG00015016725	chd1	83	90.034	ENSAPEG00000013544	chd1	56	90.034	Amphiprion_percula
ENSORLG00015016725	chd1	82	86.009	ENSAMXG00000010843	chd1	71	82.807	Astyanax_mexicanus
ENSORLG00015016725	chd1	93	77.332	ENSCATG00000032035	CHD1	60	77.394	Cercocebus_atys
ENSORLG00015016725	chd1	93	77.168	ENSCSAG00000015339	CHD1	59	76.447	Chlorocebus_sabaeus
ENSORLG00015016725	chd1	93	73.494	ENSCANG00000036916	CHD1	59	72.826	Colobus_angolensis_palliatus
ENSORLG00015016725	chd1	93	77.323	ENSCGRG00001023943	Chd1	59	76.280	Cricetulus_griseus_chok1gshd
ENSORLG00015016725	chd1	93	77.323	ENSCGRG00000008652	Chd1	59	76.280	Cricetulus_griseus_crigri
ENSORLG00015016725	chd1	83	88.801	ENSCSEG00000009553	chd1	56	88.801	Cynoglossus_semilaevis
ENSORLG00015016725	chd1	93	78.122	ENSEASG00005016110	CHD1	72	76.500	Equus_asinus_asinus
ENSORLG00015016725	chd1	83	84.175	ENSELUG00000017677	chd1	55	84.400	Esox_lucius
ENSORLG00015016725	chd1	83	88.362	ENSFHEG00000021164	chd1	65	88.362	Fundulus_heteroclitus
ENSORLG00015016725	chd1	94	80.919	ENSGMOG00000001537	chd1	56	81.791	Gadus_morhua
ENSORLG00015016725	chd1	87	78.602	ENSGALG00000031327	-	56	79.473	Gallus_gallus
ENSORLG00015016725	chd1	91	95.763	ENSGAFG00000019880	chd1	62	95.763	Gambusia_affinis
ENSORLG00015016725	chd1	93	77.323	ENSGGOG00000011463	CHD1	61	76.893	Gorilla_gorilla
ENSORLG00015016725	chd1	83	89.379	ENSHCOG00000014222	chd1	55	89.379	Hippocampus_comes
ENSORLG00015016725	chd1	80	88.290	ENSIPUG00000001369	chd1	58	84.918	Ictalurus_punctatus
ENSORLG00015016725	chd1	93	77.100	ENSLAFG00000023183	CHD1	94	76.870	Loxodonta_africana
ENSORLG00015016725	chd1	93	77.232	ENSMFAG00000031226	CHD1	60	77.394	Macaca_fascicularis
ENSORLG00015016725	chd1	93	77.069	ENSMMUG00000014090	CHD1	71	76.447	Macaca_mulatta
ENSORLG00015016725	chd1	93	77.291	ENSMNEG00000045073	CHD1	60	77.394	Macaca_nemestrina
ENSORLG00015016725	chd1	93	70.080	ENSMLEG00000041096	CHD1	58	71.937	Mandrillus_leucophaeus
ENSORLG00015016725	chd1	83	89.831	ENSMZEG00005010957	chd1	69	87.378	Maylandia_zebra
ENSORLG00015016725	chd1	54	67.406	ENSMGAG00000008369	-	75	67.065	Meleagris_gallopavo
ENSORLG00015016725	chd1	93	78.122	ENSMOCG00000019121	Chd1	54	81.015	Microtus_ochrogaster
ENSORLG00015016725	chd1	70	78.996	ENSMODG00000019266	-	96	80.764	Monodelphis_domestica
ENSORLG00015016725	chd1	95	85.686	ENSMALG00000013317	chd1	71	85.361	Monopterus_albus
ENSORLG00015016725	chd1	93	78.422	MGP_CAROLIEiJ_G0021099	Chd1	94	76.772	Mus_caroli
ENSORLG00015016725	chd1	93	77.988	ENSMUSG00000023852	Chd1	94	76.673	Mus_musculus
ENSORLG00015016725	chd1	93	78.187	MGP_PahariEiJ_G0023414	Chd1	94	76.772	Mus_pahari
ENSORLG00015016725	chd1	83	89.605	ENSNBRG00000006860	chd1	56	89.605	Neolamprologus_brichardi
ENSORLG00015016725	chd1	93	77.223	ENSNLEG00000014493	CHD1	59	76.794	Nomascus_leucogenys
ENSORLG00015016725	chd1	95	77.081	ENSOANG00000004891	CHD1	59	77.362	Ornithorhynchus_anatinus
ENSORLG00015016725	chd1	93	75.595	ENSPPAG00000043367	CHD1	60	75.098	Pan_paniscus
ENSORLG00015016725	chd1	93	77.323	ENSPTRG00000017103	CHD1	60	76.794	Pan_troglodytes
ENSORLG00015016725	chd1	93	77.232	ENSPANG00000006387	CHD1	60	77.394	Papio_anubis
ENSORLG00015016725	chd1	86	78.378	ENSPKIG00000024719	chd1	55	87.040	Paramormyrops_kingsleyae
ENSORLG00015016725	chd1	85	88.106	ENSPMGG00000005785	chd1	68	88.035	Periophthalmus_magnuspinnatus
ENSORLG00015016725	chd1	93	76.846	ENSPEMG00000015939	Chd1	59	77.323	Peromyscus_maniculatus_bairdii
ENSORLG00015016725	chd1	78	83.652	ENSPLAG00000006473	-	85	83.493	Poecilia_latipinna
ENSORLG00015016725	chd1	95	86.125	ENSPREG00000004209	chd1	61	85.998	Poecilia_reticulata
ENSORLG00015016725	chd1	93	78.621	ENSRNOG00000014434	Chd1	71	76.575	Rattus_norvegicus
ENSORLG00015016725	chd1	93	77.313	ENSRBIG00000044325	CHD1	60	77.712	Rhinopithecus_bieti
ENSORLG00015016725	chd1	93	77.413	ENSRROG00000001726	CHD1	60	77.712	Rhinopithecus_roxellana
ENSORLG00015016725	chd1	85	82.198	ENSSFOG00015007161	chd1	65	83.483	Scleropages_formosus
ENSORLG00015016725	chd1	95	87.451	ENSSDUG00000018314	chd1	71	87.017	Seriola_dumerili
ENSORLG00015016725	chd1	82	90.216	ENSSLDG00000017244	chd1	88	90.216	Seriola_lalandi_dorsalis
ENSORLG00015016725	chd1	95	87.364	ENSSPAG00000007024	chd1	71	87.463	Stegastes_partitus
ENSORLG00015016725	chd1	93	77.733	ENSSSCG00000014177	CHD1	68	78.937	Sus_scrofa
ENSORLG00015016725	chd1	95	86.097	ENSTRUG00000010282	chd1	60	84.921	Takifugu_rubripes
ENSORLG00015016725	chd1	94	85.814	ENSTNIG00000007101	chd1	78	86.014	Tetraodon_nigroviridis
ENSORLG00015016725	chd1	95	83.251	ENSXCOG00000017184	chd1	55	87.821	Xiphophorus_couchianus
ENSORLG00015016725	chd1	95	86.224	ENSXMAG00000014538	chd1	74	86.097	Xiphophorus_maculatus