EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015017040 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 12911 bases
Position: chr5:26878282-26891192
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015016075	RRM_1	PF00076.22	3.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015024168	-	4035	-	ENSORLP00015016075	245 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017040's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015017040	-	100	58.498	ENSORLG00015012606	rbm38	98	57.708
ENSORLG00015017040	-	63	69.325	ENSORLG00015000583	rbm24b	100	58.268
ENSORLG00015017040	-	56	75.912	ENSORLG00015013567	rbm24a	100	56.855

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017040	-	92	65.665	ENSG00000132819	RBM38	94	85.593	Homo_sapiens
ENSORLG00015017040	-	100	88.163	ENSAPOG00000009939	-	100	88.571	Acanthochromis_polyacanthus
ENSORLG00015017040	-	100	64.173	ENSAPOG00000003301	rbm38	98	63.492	Acanthochromis_polyacanthus
ENSORLG00015017040	-	100	61.660	ENSACIG00000000010	rbm38	98	60.870	Amphilophus_citrinellus
ENSORLG00015017040	-	100	91.429	ENSACIG00000012502	-	100	96.610	Amphilophus_citrinellus
ENSORLG00015017040	-	100	64.173	ENSAOCG00000013497	-	98	63.492	Amphiprion_ocellaris
ENSORLG00015017040	-	97	88.235	ENSAOCG00000012559	RBM38	100	88.235	Amphiprion_ocellaris
ENSORLG00015017040	-	100	64.173	ENSAPEG00000013137	rbm38	98	63.492	Amphiprion_percula
ENSORLG00015017040	-	100	88.163	ENSAPEG00000023581	-	100	88.163	Amphiprion_percula
ENSORLG00015017040	-	100	62.055	ENSATEG00000016366	rbm38	98	62.055	Anabas_testudineus
ENSORLG00015017040	-	100	89.796	ENSATEG00000016710	-	100	89.796	Anabas_testudineus
ENSORLG00015017040	-	95	66.949	ENSACAG00000016238	RBM38	95	61.538	Anolis_carolinensis
ENSORLG00015017040	-	92	66.524	ENSANAG00000031959	RBM38	78	93.617	Aotus_nancymaae
ENSORLG00015017040	-	100	91.020	ENSACLG00000019514	-	100	90.204	Astatotilapia_calliptera
ENSORLG00015017040	-	96	64.255	ENSAMXG00000038120	rbm38	82	68.020	Astyanax_mexicanus
ENSORLG00015017040	-	100	74.694	ENSAMXG00000015601	-	100	71.429	Astyanax_mexicanus
ENSORLG00015017040	-	92	66.094	ENSBTAG00000008105	RBM38	89	63.636	Bos_taurus
ENSORLG00015017040	-	73	53.968	WBGene00006321	sup-12	80	66.942	Caenorhabditis_elegans
ENSORLG00015017040	-	92	66.524	ENSCJAG00000019139	RBM38	78	93.617	Callithrix_jacchus
ENSORLG00015017040	-	92	65.948	ENSCAFG00020021943	RBM38	89	64.807	Canis_lupus_dingo
ENSORLG00015017040	-	99	62.500	ENSCHIG00000002609	RBM38	92	60.729	Capra_hircus
ENSORLG00015017040	-	92	65.517	ENSCPOG00000012781	RBM38	89	64.224	Cavia_porcellus
ENSORLG00015017040	-	92	66.524	ENSCCAG00000036872	RBM38	78	93.617	Cebus_capucinus
ENSORLG00015017040	-	92	65.086	ENSCATG00000032133	RBM38	78	93.617	Cercocebus_atys
ENSORLG00015017040	-	92	66.094	ENSCLAG00000005906	RBM38	92	63.362	Chinchilla_lanigera
ENSORLG00015017040	-	92	65.086	ENSCSAG00000015503	RBM38	89	62.338	Chlorocebus_sabaeus
ENSORLG00015017040	-	95	67.089	ENSCPBG00000024059	RBM38	100	62.605	Chrysemys_picta_bellii
ENSORLG00015017040	-	95	50.424	ENSCANG00000030105	-	80	46.186	Colobus_angolensis_palliatus
ENSORLG00015017040	-	92	63.362	ENSCGRG00001012928	Rbm38	89	61.472	Cricetulus_griseus_chok1gshd
ENSORLG00015017040	-	100	86.122	ENSCSEG00000004701	-	100	86.122	Cynoglossus_semilaevis
ENSORLG00015017040	-	84	58.173	ENSCSEG00000020943	rbm38	60	65.193	Cynoglossus_semilaevis
ENSORLG00015017040	-	100	86.122	ENSCVAG00000005472	-	100	86.531	Cyprinodon_variegatus
ENSORLG00015017040	-	99	59.438	ENSCVAG00000015952	rbm38	98	60.079	Cyprinodon_variegatus
ENSORLG00015017040	-	99	70.492	ENSDARG00000058818	rbm38	82	79.487	Danio_rerio
ENSORLG00015017040	-	92	65.217	ENSDNOG00000032004	RBM38	98	62.009	Dasypus_novemcinctus
ENSORLG00015017040	-	92	65.236	ENSECAG00000007700	RBM38	89	62.931	Equus_caballus
ENSORLG00015017040	-	92	64.957	ENSEEUG00000013489	RBM38	89	61.905	Erinaceus_europaeus
ENSORLG00015017040	-	100	78.800	ENSELUG00000005849	-	100	76.800	Esox_lucius
ENSORLG00015017040	-	90	66.520	ENSELUG00000000585	-	98	61.538	Esox_lucius
ENSORLG00015017040	-	92	66.379	ENSFCAG00000042916	RBM38	82	88.119	Felis_catus
ENSORLG00015017040	-	71	75.141	ENSFALG00000010805	RBM38	90	72.000	Ficedula_albicollis
ENSORLG00015017040	-	100	81.452	ENSFHEG00000006160	-	100	82.258	Fundulus_heteroclitus
ENSORLG00015017040	-	100	60.630	ENSFHEG00000017748	rbm38	98	59.761	Fundulus_heteroclitus
ENSORLG00015017040	-	75	84.865	ENSGMOG00000016655	-	99	83.243	Gadus_morhua
ENSORLG00015017040	-	95	64.831	ENSGALG00000026081	RBM38	100	62.025	Gallus_gallus
ENSORLG00015017040	-	94	80.952	ENSGACG00000009873	-	100	80.952	Gasterosteus_aculeatus
ENSORLG00015017040	-	95	63.948	ENSGACG00000015224	rbm38	100	63.519	Gasterosteus_aculeatus
ENSORLG00015017040	-	95	67.089	ENSGAGG00000001187	RBM38	100	62.605	Gopherus_agassizii
ENSORLG00015017040	-	100	91.020	ENSHBUG00000011778	-	100	90.204	Haplochromis_burtoni
ENSORLG00015017040	-	100	63.241	ENSHBUG00000012058	rbm38	98	62.055	Haplochromis_burtoni
ENSORLG00015017040	-	92	63.362	ENSHGLG00000015077	RBM38	89	63.793	Heterocephalus_glaber_female
ENSORLG00015017040	-	91	50.220	ENSHCOG00000019040	rbm38	78	54.082	Hippocampus_comes
ENSORLG00015017040	-	85	86.538	ENSHCOG00000005622	-	57	87.879	Hippocampus_comes
ENSORLG00015017040	-	100	71.774	ENSIPUG00000019349	-	100	69.355	Ictalurus_punctatus
ENSORLG00015017040	-	92	59.746	ENSKMAG00000012402	rbm38	99	58.723	Kryptolebias_marmoratus
ENSORLG00015017040	-	100	62.500	ENSLBEG00000018878	rbm38	98	62.846	Labrus_bergylta
ENSORLG00015017040	-	100	87.550	ENSLBEG00000016163	RBM38	100	87.550	Labrus_bergylta
ENSORLG00015017040	-	100	74.286	ENSLOCG00000003456	rbm38	100	71.837	Lepisosteus_oculatus
ENSORLG00015017040	-	92	65.086	ENSMFAG00000043808	RBM38	82	89.109	Macaca_fascicularis
ENSORLG00015017040	-	92	65.086	ENSMMUG00000031391	RBM38	78	93.617	Macaca_mulatta
ENSORLG00015017040	-	92	65.086	ENSMNEG00000034683	RBM38	78	93.617	Macaca_nemestrina
ENSORLG00015017040	-	100	87.347	ENSMAMG00000020499	RBM38	100	87.347	Mastacembelus_armatus
ENSORLG00015017040	-	100	64.427	ENSMAMG00000024135	rbm38	98	63.241	Mastacembelus_armatus
ENSORLG00015017040	-	100	63.241	ENSMZEG00005026036	rbm38	98	62.055	Maylandia_zebra
ENSORLG00015017040	-	100	91.020	ENSMZEG00005000849	-	100	90.204	Maylandia_zebra
ENSORLG00015017040	-	92	64.655	ENSMAUG00000021211	Rbm38	89	61.905	Mesocricetus_auratus
ENSORLG00015017040	-	92	66.524	ENSMICG00000038011	RBM38	98	63.793	Microcebus_murinus
ENSORLG00015017040	-	92	64.655	ENSMOCG00000008715	Rbm38	89	61.905	Microtus_ochrogaster
ENSORLG00015017040	-	100	88.980	ENSMMOG00000020051	-	100	88.980	Mola_mola
ENSORLG00015017040	-	95	65.678	ENSMODG00000016458	RBM38	92	63.136	Monodelphis_domestica
ENSORLG00015017040	-	77	91.534	ENSMALG00000004680	RBM38	72	91.534	Monopterus_albus
ENSORLG00015017040	-	69	70.000	ENSMALG00000022327	rbm38	72	70.238	Monopterus_albus
ENSORLG00015017040	-	92	62.931	MGP_CAROLIEiJ_G0024745	Rbm38	89	62.771	Mus_caroli
ENSORLG00015017040	-	92	62.931	ENSMUSG00000027510	Rbm38	89	62.771	Mus_musculus
ENSORLG00015017040	-	92	62.931	MGP_PahariEiJ_G0026186	Rbm38	89	62.931	Mus_pahari
ENSORLG00015017040	-	92	62.931	MGP_SPRETEiJ_G0025665	Rbm38	89	62.771	Mus_spretus
ENSORLG00015017040	-	72	75.275	ENSMPUG00000006518	RBM38	89	74.176	Mustela_putorius_furo
ENSORLG00015017040	-	92	64.224	ENSMLUG00000011140	RBM38	98	61.905	Myotis_lucifugus
ENSORLG00015017040	-	100	91.429	ENSNBRG00000022545	-	100	90.612	Neolamprologus_brichardi
ENSORLG00015017040	-	100	63.636	ENSNBRG00000022685	rbm38	98	62.451	Neolamprologus_brichardi
ENSORLG00015017040	-	92	65.665	ENSODEG00000007980	RBM38	89	63.362	Octodon_degus
ENSORLG00015017040	-	99	91.393	ENSONIG00000020324	-	100	90.574	Oreochromis_niloticus
ENSORLG00015017040	-	99	63.492	ENSONIG00000017073	rbm38	100	62.302	Oreochromis_niloticus
ENSORLG00015017040	-	92	66.087	ENSOANG00000009259	RBM38	81	62.719	Ornithorhynchus_anatinus
ENSORLG00015017040	-	99	58.566	ENSORLG00000012154	rbm38	98	56.917	Oryzias_latipes
ENSORLG00015017040	-	100	99.187	ENSORLG00000027180	-	100	99.187	Oryzias_latipes
ENSORLG00015017040	-	100	99.187	ENSORLG00020020751	-	100	99.187	Oryzias_latipes_hni
ENSORLG00015017040	-	100	58.498	ENSORLG00020017871	rbm38	98	57.708	Oryzias_latipes_hni
ENSORLG00015017040	-	99	59.761	ENSOMEG00000006805	rbm38	98	58.498	Oryzias_melastigma
ENSORLG00015017040	-	100	96.735	ENSOMEG00000023912	-	100	96.735	Oryzias_melastigma
ENSORLG00015017040	-	92	66.094	ENSOGAG00000029136	RBM38	88	63.203	Otolemur_garnettii
ENSORLG00015017040	-	92	66.379	ENSPPRG00000009507	RBM38	82	88.119	Panthera_pardus
ENSORLG00015017040	-	72	74.725	ENSPTRG00000013661	RBM38	82	89.109	Pan_troglodytes
ENSORLG00015017040	-	51	84.127	ENSPTRG00000045845	-	66	86.667	Pan_troglodytes
ENSORLG00015017040	-	92	65.086	ENSPANG00000020919	-	78	93.617	Papio_anubis
ENSORLG00015017040	-	92	54.741	ENSPANG00000033127	-	91	50.649	Papio_anubis
ENSORLG00015017040	-	100	68.400	ENSPKIG00000025417	rbm38	100	68.000	Paramormyrops_kingsleyae
ENSORLG00015017040	-	100	70.565	ENSPKIG00000018122	-	97	88.596	Paramormyrops_kingsleyae
ENSORLG00015017040	-	95	67.089	ENSPSIG00000011649	RBM38	92	62.185	Pelodiscus_sinensis
ENSORLG00015017040	-	100	82.258	ENSPMGG00000017094	-	100	82.258	Periophthalmus_magnuspinnatus
ENSORLG00015017040	-	99	60.956	ENSPMGG00000011343	rbm38	98	60.558	Periophthalmus_magnuspinnatus
ENSORLG00015017040	-	95	65.678	ENSPCIG00000013648	RBM38	92	61.925	Phascolarctos_cinereus
ENSORLG00015017040	-	100	58.984	ENSPFOG00000011658	rbm38	98	58.661	Poecilia_formosa
ENSORLG00015017040	-	100	85.366	ENSPLAG00000002500	-	100	84.553	Poecilia_latipinna
ENSORLG00015017040	-	100	59.533	ENSPLAG00000005218	rbm38	98	58.661	Poecilia_latipinna
ENSORLG00015017040	-	100	57.422	ENSPMEG00000015770	rbm38	98	58.661	Poecilia_mexicana
ENSORLG00015017040	-	100	58.984	ENSPREG00000007398	rbm38	98	58.661	Poecilia_reticulata
ENSORLG00015017040	-	92	66.524	ENSPCOG00000026201	RBM38	77	93.617	Propithecus_coquereli
ENSORLG00015017040	-	96	42.975	ENSPVAG00000006457	RBM38	92	42.739	Pteropus_vampyrus
ENSORLG00015017040	-	100	91.020	ENSPNYG00000019727	-	100	95.763	Pundamilia_nyererei
ENSORLG00015017040	-	100	62.846	ENSPNYG00000021373	rbm38	98	61.660	Pundamilia_nyererei
ENSORLG00015017040	-	100	75.510	ENSPNAG00000015123	-	98	82.836	Pygocentrus_nattereri
ENSORLG00015017040	-	96	67.797	ENSPNAG00000010596	rbm38	82	73.980	Pygocentrus_nattereri
ENSORLG00015017040	-	92	66.094	ENSRNOG00000006420	Rbm38	89	63.793	Rattus_norvegicus
ENSORLG00015017040	-	95	53.191	ENSRROG00000036388	-	90	50.000	Rhinopithecus_roxellana
ENSORLG00015017040	-	92	66.524	ENSSBOG00000031053	RBM38	93	89.109	Saimiri_boliviensis_boliviensis
ENSORLG00015017040	-	100	68.273	ENSSFOG00015004453	rbm38	100	70.565	Scleropages_formosus
ENSORLG00015017040	-	100	88.980	ENSSDUG00000021082	RBM38	100	88.980	Seriola_dumerili
ENSORLG00015017040	-	100	63.636	ENSSDUG00000022611	rbm38	98	63.745	Seriola_dumerili
ENSORLG00015017040	-	100	63.636	ENSSLDG00000010845	rbm38	98	63.745	Seriola_lalandi_dorsalis
ENSORLG00015017040	-	100	88.980	ENSSLDG00000011778	RBM38	100	88.980	Seriola_lalandi_dorsalis
ENSORLG00015017040	-	100	63.922	ENSSPAG00000011113	rbm38	98	63.241	Stegastes_partitus
ENSORLG00015017040	-	100	89.796	ENSSPAG00000020989	RBM38	100	89.796	Stegastes_partitus
ENSORLG00015017040	-	92	66.379	ENSSSCG00000007504	RBM38	89	64.069	Sus_scrofa
ENSORLG00015017040	-	100	85.306	ENSTRUG00000019869	-	100	85.306	Takifugu_rubripes
ENSORLG00015017040	-	96	63.071	ENSTRUG00000024954	rbm38	94	62.241	Takifugu_rubripes
ENSORLG00015017040	-	95	82.328	ENSTNIG00000007093	-	100	82.328	Tetraodon_nigroviridis
ENSORLG00015017040	-	92	66.379	ENSUAMG00000019780	RBM38	89	64.655	Ursus_americanus
ENSORLG00015017040	-	92	65.948	ENSVVUG00000017246	RBM38	89	64.807	Vulpes_vulpes
ENSORLG00015017040	-	95	62.712	ENSXETG00000011268	rbm38	99	59.746	Xenopus_tropicalis
ENSORLG00015017040	-	86	64.912	ENSXCOG00000017324	-	68	83.553	Xiphophorus_couchianus
ENSORLG00015017040	-	100	61.265	ENSXMAG00000023662	rbm38	98	60.956	Xiphophorus_maculatus