EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015017210 (Gene tree)
Gene ID: -
Gene Symbol: smarca5
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 12940 bases
Position: chr1:18257619-18270558
Accession: ZDB-GENE-021125-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015016207	ResIII	PF04851.15	8.7e-11	1	1
ENSORLP00015016207	DEAD	PF00270.29	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015024347	-	8098	-	ENSORLP00015016207	1037 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017210's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015017210	smarca5	57	40.728	ENSORLG00015001680	chd1l	62	42.545
ENSORLG00015017210	smarca5	51	41.324	ENSORLG00015016725	chd1	51	41.176

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017210	smarca5	95	82.727	ENSG00000102038	SMARCA1	92	83.640	Homo_sapiens
ENSORLG00015017210	smarca5	100	97.303	ENSAPOG00000016035	smarca5	100	97.303	Acanthochromis_polyacanthus
ENSORLG00015017210	smarca5	95	81.936	ENSAMEG00000015218	SMARCA1	92	82.727	Ailuropoda_melanoleuca
ENSORLG00015017210	smarca5	87	97.336	ENSACIG00000016982	smarca5	100	97.336	Amphilophus_citrinellus
ENSORLG00015017210	smarca5	100	97.303	ENSAOCG00000015578	smarca5	100	97.303	Amphiprion_ocellaris
ENSORLG00015017210	smarca5	100	97.303	ENSAPEG00000011117	smarca5	99	98.345	Amphiprion_percula
ENSORLG00015017210	smarca5	100	96.818	ENSATEG00000012894	smarca5	100	96.818	Anabas_testudineus
ENSORLG00015017210	smarca5	94	84.521	ENSAPLG00000013149	SMARCA1	99	84.765	Anas_platyrhynchos
ENSORLG00015017210	smarca5	98	82.583	ENSACAG00000011376	SMARCA1	93	85.378	Anolis_carolinensis
ENSORLG00015017210	smarca5	95	78.081	ENSANAG00000023098	SMARCA1	92	78.937	Aotus_nancymaae
ENSORLG00015017210	smarca5	100	96.435	ENSACLG00000025356	smarca5	100	96.435	Astatotilapia_calliptera
ENSORLG00015017210	smarca5	99	91.740	ENSAMXG00000005709	smarca5	97	92.666	Astyanax_mexicanus
ENSORLG00015017210	smarca5	89	84.640	ENSAMXG00000011227	smarca1	99	85.766	Astyanax_mexicanus
ENSORLG00015017210	smarca5	95	83.078	ENSBTAG00000002292	SMARCA1	90	83.491	Bos_taurus
ENSORLG00015017210	smarca5	96	62.562	WBGene00002169	isw-1	92	65.352	Caenorhabditis_elegans
ENSORLG00015017210	smarca5	94	83.401	ENSCJAG00000002868	SMARCA1	92	83.640	Callithrix_jacchus
ENSORLG00015017210	smarca5	95	73.386	ENSCAFG00000018673	SMARCA1	99	75.293	Canis_familiaris
ENSORLG00015017210	smarca5	95	82.929	ENSCAFG00020001751	SMARCA1	92	83.742	Canis_lupus_dingo
ENSORLG00015017210	smarca5	95	82.776	ENSCHIG00000009837	SMARCA1	92	83.333	Capra_hircus
ENSORLG00015017210	smarca5	95	82.929	ENSTSYG00000004240	SMARCA1	94	84.517	Carlito_syrichta
ENSORLG00015017210	smarca5	95	81.526	ENSCPOG00000013601	SMARCA1	93	82.317	Cavia_porcellus
ENSORLG00015017210	smarca5	95	80.101	ENSCCAG00000030817	SMARCA1	92	80.982	Cebus_capucinus
ENSORLG00015017210	smarca5	93	83.747	ENSCATG00000015921	SMARCA1	90	84.771	Cercocebus_atys
ENSORLG00015017210	smarca5	95	82.121	ENSCLAG00000002171	SMARCA1	92	82.924	Chinchilla_lanigera
ENSORLG00015017210	smarca5	95	82.727	ENSCSAG00000008460	SMARCA1	92	83.640	Chlorocebus_sabaeus
ENSORLG00015017210	smarca5	95	84.498	ENSCPBG00000001146	SMARCA1	92	85.072	Chrysemys_picta_bellii
ENSORLG00015017210	smarca5	96	73.857	ENSCING00000004110	swi/snf	97	75.204	Ciona_intestinalis
ENSORLG00015017210	smarca5	96	73.439	ENSCSAVG00000004620	-	99	76.063	Ciona_savignyi
ENSORLG00015017210	smarca5	95	82.828	ENSCANG00000007183	SMARCA1	92	83.742	Colobus_angolensis_palliatus
ENSORLG00015017210	smarca5	95	81.919	ENSCGRG00001010776	Smarca1	92	82.720	Cricetulus_griseus_chok1gshd
ENSORLG00015017210	smarca5	95	81.358	ENSCGRG00000015301	Smarca1	94	83.157	Cricetulus_griseus_crigri
ENSORLG00015017210	smarca5	100	96.625	ENSCSEG00000000328	smarca5	100	96.625	Cynoglossus_semilaevis
ENSORLG00015017210	smarca5	100	96.143	ENSCVAG00000008668	smarca5	99	97.285	Cyprinodon_variegatus
ENSORLG00015017210	smarca5	100	91.338	ENSDARG00000052348	smarca5	100	91.145	Danio_rerio
ENSORLG00015017210	smarca5	94	83.250	ENSDARG00000012776	smarca1	96	83.250	Danio_rerio
ENSORLG00015017210	smarca5	94	82.551	ENSDNOG00000004315	SMARCA1	91	84.452	Dasypus_novemcinctus
ENSORLG00015017210	smarca5	98	80.413	ENSDORG00000009270	Smarca1	90	84.665	Dipodomys_ordii
ENSORLG00015017210	smarca5	95	74.372	FBgn0011604	Iswi	97	74.000	Drosophila_melanogaster
ENSORLG00015017210	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSORLG00015017210	smarca5	97	81.132	ENSEBUG00000001239	smarca5	96	82.939	Eptatretus_burgeri
ENSORLG00015017210	smarca5	94	79.385	ENSEASG00005008218	SMARCA1	99	79.776	Equus_asinus_asinus
ENSORLG00015017210	smarca5	95	82.828	ENSECAG00000012106	SMARCA1	92	83.640	Equus_caballus
ENSORLG00015017210	smarca5	76	83.775	ENSEEUG00000014927	SMARCA1	80	83.775	Erinaceus_europaeus
ENSORLG00015017210	smarca5	94	84.734	ENSELUG00000010515	smarca1	95	85.647	Esox_lucius
ENSORLG00015017210	smarca5	95	82.828	ENSFCAG00000018496	SMARCA1	92	83.640	Felis_catus
ENSORLG00015017210	smarca5	88	85.777	ENSFALG00000000209	SMARCA1	98	85.777	Ficedula_albicollis
ENSORLG00015017210	smarca5	95	81.162	ENSFDAG00000009818	SMARCA1	93	83.070	Fukomys_damarensis
ENSORLG00015017210	smarca5	100	94.842	ENSFHEG00000007687	smarca5	100	94.455	Fundulus_heteroclitus
ENSORLG00015017210	smarca5	96	81.881	ENSGALG00000008431	SMARCA1	95	85.684	Gallus_gallus
ENSORLG00015017210	smarca5	100	96.721	ENSGAFG00000017731	smarca5	100	96.721	Gambusia_affinis
ENSORLG00015017210	smarca5	93	85.082	ENSGAGG00000023575	SMARCA1	99	85.082	Gopherus_agassizii
ENSORLG00015017210	smarca5	70	96.000	ENSGGOG00000012841	-	91	79.883	Gorilla_gorilla
ENSORLG00015017210	smarca5	95	81.919	ENSHGLG00000003080	SMARCA1	92	82.720	Heterocephalus_glaber_female
ENSORLG00015017210	smarca5	95	81.426	ENSHGLG00100001102	SMARCA1	98	82.215	Heterocephalus_glaber_male
ENSORLG00015017210	smarca5	100	97.011	ENSHCOG00000005458	smarca5	100	97.011	Hippocampus_comes
ENSORLG00015017210	smarca5	100	90.385	ENSIPUG00000005229	SMARCA5	99	92.814	Ictalurus_punctatus
ENSORLG00015017210	smarca5	97	82.051	ENSIPUG00000016905	Smarca1	99	84.426	Ictalurus_punctatus
ENSORLG00015017210	smarca5	97	81.773	ENSSTOG00000014524	SMARCA1	95	83.214	Ictidomys_tridecemlineatus
ENSORLG00015017210	smarca5	96	80.556	ENSJJAG00000002593	Smarca1	93	82.197	Jaculus_jaculus
ENSORLG00015017210	smarca5	100	96.914	ENSKMAG00000003777	smarca5	100	96.914	Kryptolebias_marmoratus
ENSORLG00015017210	smarca5	94	96.323	ENSLBEG00000013295	SMARCA1	100	97.595	Labrus_bergylta
ENSORLG00015017210	smarca5	100	96.239	ENSLBEG00000018112	smarca5	100	96.239	Labrus_bergylta
ENSORLG00015017210	smarca5	93	85.773	ENSLACG00000016697	SMARCA1	95	85.773	Latimeria_chalumnae
ENSORLG00015017210	smarca5	94	86.122	ENSLOCG00000014591	smarca1	95	86.285	Lepisosteus_oculatus
ENSORLG00015017210	smarca5	96	81.275	ENSLAFG00000000896	SMARCA1	98	82.520	Loxodonta_africana
ENSORLG00015017210	smarca5	95	82.727	ENSMFAG00000002117	SMARCA1	93	84.591	Macaca_fascicularis
ENSORLG00015017210	smarca5	93	83.747	ENSMMUG00000008818	SMARCA1	97	84.558	Macaca_mulatta
ENSORLG00015017210	smarca5	93	83.747	ENSMNEG00000041768	SMARCA1	93	84.591	Macaca_nemestrina
ENSORLG00015017210	smarca5	95	82.727	ENSMLEG00000043198	SMARCA1	92	83.640	Mandrillus_leucophaeus
ENSORLG00015017210	smarca5	100	96.638	ENSMAMG00000014294	smarca5	100	96.638	Mastacembelus_armatus
ENSORLG00015017210	smarca5	100	96.435	ENSMZEG00005009369	smarca5	100	96.435	Maylandia_zebra
ENSORLG00015017210	smarca5	94	83.501	ENSMGAG00000007042	SMARCA1	97	83.737	Meleagris_gallopavo
ENSORLG00015017210	smarca5	93	82.080	ENSMAUG00000008133	Smarca1	90	82.945	Mesocricetus_auratus
ENSORLG00015017210	smarca5	97	82.090	ENSMICG00000015768	SMARCA1	92	83.947	Microcebus_murinus
ENSORLG00015017210	smarca5	95	81.206	ENSMOCG00000009464	Smarca1	92	81.994	Microtus_ochrogaster
ENSORLG00015017210	smarca5	96	95.871	ENSMMOG00000005547	smarca5	100	95.871	Mola_mola
ENSORLG00015017210	smarca5	98	80.810	ENSMODG00000013187	-	94	84.718	Monodelphis_domestica
ENSORLG00015017210	smarca5	100	96.439	ENSMALG00000002081	smarca5	100	96.439	Monopterus_albus
ENSORLG00015017210	smarca5	97	80.138	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.197	Mus_caroli
ENSORLG00015017210	smarca5	97	80.396	ENSMUSG00000031099	Smarca1	92	82.197	Mus_musculus
ENSORLG00015017210	smarca5	96	80.558	MGP_PahariEiJ_G0031579	Smarca1	92	82.480	Mus_pahari
ENSORLG00015017210	smarca5	97	80.396	MGP_SPRETEiJ_G0034192	Smarca1	92	82.197	Mus_spretus
ENSORLG00015017210	smarca5	95	81.936	ENSMPUG00000017423	SMARCA1	87	82.727	Mustela_putorius_furo
ENSORLG00015017210	smarca5	95	80.677	ENSMLUG00000029614	SMARCA1	93	81.149	Myotis_lucifugus
ENSORLG00015017210	smarca5	93	82.595	ENSNGAG00000006492	Smarca1	90	83.475	Nannospalax_galili
ENSORLG00015017210	smarca5	96	97.384	ENSNBRG00000004463	smarca5	99	97.384	Neolamprologus_brichardi
ENSORLG00015017210	smarca5	95	81.038	ENSNLEG00000015179	SMARCA1	94	83.864	Nomascus_leucogenys
ENSORLG00015017210	smarca5	88	76.642	ENSMEUG00000008819	SMARCA1	97	76.642	Notamacropus_eugenii
ENSORLG00015017210	smarca5	97	79.686	ENSODEG00000012163	SMARCA1	90	82.965	Octodon_degus
ENSORLG00015017210	smarca5	100	96.532	ENSONIG00000009993	smarca5	100	96.532	Oreochromis_niloticus
ENSORLG00015017210	smarca5	93	85.288	ENSOANG00000002862	SMARCA1	99	85.288	Ornithorhynchus_anatinus
ENSORLG00015017210	smarca5	95	83.181	ENSOCUG00000001047	SMARCA1	92	83.742	Oryctolagus_cuniculus
ENSORLG00015017210	smarca5	100	99.326	ENSORLG00000021998	smarca5	100	99.326	Oryzias_latipes
ENSORLG00015017210	smarca5	100	99.229	ENSORLG00020017679	smarca5	100	99.229	Oryzias_latipes_hni
ENSORLG00015017210	smarca5	100	99.229	ENSOMEG00000000086	smarca5	100	99.229	Oryzias_melastigma
ENSORLG00015017210	smarca5	93	83.470	ENSOGAG00000004399	SMARCA1	90	84.122	Otolemur_garnettii
ENSORLG00015017210	smarca5	94	83.333	ENSOARG00000014638	SMARCA1	99	83.333	Ovis_aries
ENSORLG00015017210	smarca5	95	82.727	ENSPPAG00000034647	SMARCA1	92	83.640	Pan_paniscus
ENSORLG00015017210	smarca5	95	82.929	ENSPPRG00000008929	SMARCA1	92	83.742	Panthera_pardus
ENSORLG00015017210	smarca5	95	81.132	ENSPTIG00000000915	SMARCA1	96	81.910	Panthera_tigris_altaica
ENSORLG00015017210	smarca5	95	82.727	ENSPTRG00000049876	SMARCA1	90	84.771	Pan_troglodytes
ENSORLG00015017210	smarca5	95	82.727	ENSPANG00000003871	SMARCA1	92	83.640	Papio_anubis
ENSORLG00015017210	smarca5	94	82.401	ENSPKIG00000013411	smarca1	96	84.437	Paramormyrops_kingsleyae
ENSORLG00015017210	smarca5	95	83.483	ENSPSIG00000010101	SMARCA1	99	85.082	Pelodiscus_sinensis
ENSORLG00015017210	smarca5	93	82.389	ENSPEMG00000017503	Smarca1	90	83.263	Peromyscus_maniculatus_bairdii
ENSORLG00015017210	smarca5	94	85.143	ENSPCIG00000015460	SMARCA1	96	85.143	Phascolarctos_cinereus
ENSORLG00015017210	smarca5	100	96.818	ENSPFOG00000007649	smarca5	100	96.818	Poecilia_formosa
ENSORLG00015017210	smarca5	100	96.818	ENSPLAG00000003363	smarca5	100	96.818	Poecilia_latipinna
ENSORLG00015017210	smarca5	100	96.914	ENSPMEG00000019849	smarca5	100	96.914	Poecilia_mexicana
ENSORLG00015017210	smarca5	100	96.818	ENSPREG00000023250	smarca5	100	96.818	Poecilia_reticulata
ENSORLG00015017210	smarca5	95	79.899	ENSPPYG00000020703	SMARCA1	92	80.777	Pongo_abelii
ENSORLG00015017210	smarca5	75	78.125	ENSPCOG00000020722	SMARCA1	93	80.119	Propithecus_coquereli
ENSORLG00015017210	smarca5	87	83.355	ENSPVAG00000003805	SMARCA1	84	83.443	Pteropus_vampyrus
ENSORLG00015017210	smarca5	58	98.153	ENSPNYG00000012299	smarca5	92	98.153	Pundamilia_nyererei
ENSORLG00015017210	smarca5	97	80.697	ENSRNOG00000003762	Smarca1	92	82.515	Rattus_norvegicus
ENSORLG00015017210	smarca5	95	82.828	ENSRROG00000034167	SMARCA1	92	83.742	Rhinopithecus_roxellana
ENSORLG00015017210	smarca5	94	83.538	ENSSBOG00000020641	SMARCA1	99	83.538	Saimiri_boliviensis_boliviensis
ENSORLG00015017210	smarca5	94	80.350	ENSSHAG00000013518	SMARCA1	99	80.473	Sarcophilus_harrisii
ENSORLG00015017210	smarca5	94	93.196	ENSSFOG00015016794	smarca5	100	93.196	Scleropages_formosus
ENSORLG00015017210	smarca5	97	83.021	ENSSFOG00015009043	smarca1	96	85.451	Scleropages_formosus
ENSORLG00015017210	smarca5	100	96.146	ENSSMAG00000004801	smarca5	100	96.146	Scophthalmus_maximus
ENSORLG00015017210	smarca5	100	96.818	ENSSDUG00000020690	smarca5	100	96.818	Seriola_dumerili
ENSORLG00015017210	smarca5	100	96.818	ENSSLDG00000025190	smarca5	100	96.818	Seriola_lalandi_dorsalis
ENSORLG00015017210	smarca5	78	83.986	ENSSARG00000000842	SMARCA1	81	83.986	Sorex_araneus
ENSORLG00015017210	smarca5	95	83.773	ENSSPUG00000000590	SMARCA1	93	85.684	Sphenodon_punctatus
ENSORLG00015017210	smarca5	100	97.110	ENSSPAG00000002894	smarca5	100	97.110	Stegastes_partitus
ENSORLG00015017210	smarca5	94	83.077	ENSSSCG00000012649	SMARCA1	95	83.214	Sus_scrofa
ENSORLG00015017210	smarca5	94	84.318	ENSTGUG00000003899	-	99	84.560	Taeniopygia_guttata
ENSORLG00015017210	smarca5	100	94.889	ENSTRUG00000014094	smarca5	100	94.986	Takifugu_rubripes
ENSORLG00015017210	smarca5	98	94.975	ENSTNIG00000017717	smarca5	97	95.248	Tetraodon_nigroviridis
ENSORLG00015017210	smarca5	86	82.373	ENSTBEG00000014973	SMARCA1	89	82.413	Tupaia_belangeri
ENSORLG00015017210	smarca5	93	79.469	ENSTTRG00000006168	SMARCA1	96	80.231	Tursiops_truncatus
ENSORLG00015017210	smarca5	95	82.727	ENSUAMG00000020201	SMARCA1	92	83.538	Ursus_americanus
ENSORLG00015017210	smarca5	98	77.438	ENSUMAG00000004073	SMARCA1	95	85.185	Ursus_maritimus
ENSORLG00015017210	smarca5	73	87.171	ENSVPAG00000010492	-	77	87.543	Vicugna_pacos
ENSORLG00015017210	smarca5	95	82.929	ENSVVUG00000008878	SMARCA1	98	84.878	Vulpes_vulpes
ENSORLG00015017210	smarca5	95	84.435	ENSXETG00000001526	smarca1	98	85.010	Xenopus_tropicalis
ENSORLG00015017210	smarca5	97	97.123	ENSXCOG00000011170	smarca5	100	97.123	Xiphophorus_couchianus
ENSORLG00015017210	smarca5	100	96.625	ENSXMAG00000009678	smarca5	100	96.625	Xiphophorus_maculatus