EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015017339 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 14577 bases
Position: chr21:7747348-7761924
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015032492	Smg4_UPF3	PF03467.15	2.1e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015034289	-	3679	-	ENSORLP00015032498	328 (aa)	-	-
ENSORLT00015024544	-	4291	-	ENSORLP00015032492	798 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017339	upf3a	54	50.321	ENSAPOG00000012775	upf3b	97	51.193	Acanthochromis_polyacanthus
ENSORLG00015017339	upf3a	58	87.257	ENSAPOG00000013484	upf3a	100	87.257	Acanthochromis_polyacanthus
ENSORLG00015017339	upf3a	57	52.311	ENSAMEG00000004259	UPF3A	99	52.092	Ailuropoda_melanoleuca
ENSORLG00015017339	upf3a	57	82.773	ENSACIG00000020468	upf3a	99	82.773	Amphilophus_citrinellus
ENSORLG00015017339	upf3a	58	87.257	ENSAOCG00000020784	upf3a	100	87.257	Amphiprion_ocellaris
ENSORLG00015017339	upf3a	58	87.257	ENSAPEG00000003519	upf3a	100	87.257	Amphiprion_percula
ENSORLG00015017339	upf3a	51	52.164	ENSATEG00000018742	upf3b	92	51.936	Anabas_testudineus
ENSORLG00015017339	upf3a	58	85.961	ENSATEG00000005843	upf3a	100	85.961	Anabas_testudineus
ENSORLG00015017339	upf3a	51	62.679	ENSACAG00000001540	UPF3A	99	62.679	Anolis_carolinensis
ENSORLG00015017339	upf3a	55	51.566	ENSANAG00000021713	UPF3A	98	52.101	Aotus_nancymaae
ENSORLG00015017339	upf3a	58	83.784	ENSACLG00000026274	upf3a	100	83.784	Astatotilapia_calliptera
ENSORLG00015017339	upf3a	58	77.922	ENSAMXG00000002608	upf3a	100	77.922	Astyanax_mexicanus
ENSORLG00015017339	upf3a	51	55.787	ENSCJAG00000019102	UPF3A	89	56.019	Callithrix_jacchus
ENSORLG00015017339	upf3a	53	52.052	ENSCAFG00000006504	UPF3A	92	54.128	Canis_familiaris
ENSORLG00015017339	upf3a	53	52.052	ENSCAFG00020014268	UPF3A	85	55.474	Canis_lupus_dingo
ENSORLG00015017339	upf3a	51	55.294	ENSCHIG00000008682	UPF3A	84	55.765	Capra_hircus
ENSORLG00015017339	upf3a	51	56.552	ENSCCAG00000018406	UPF3A	90	57.011	Cebus_capucinus
ENSORLG00015017339	upf3a	51	58.491	ENSCATG00000029733	UPF3A	90	59.198	Cercocebus_atys
ENSORLG00015017339	upf3a	51	58.042	ENSCSAG00000017388	UPF3A	90	57.604	Chlorocebus_sabaeus
ENSORLG00015017339	upf3a	58	83.948	ENSCSEG00000005106	upf3a	99	83.948	Cynoglossus_semilaevis
ENSORLG00015017339	upf3a	58	81.681	ENSCVAG00000022333	upf3a	100	81.681	Cyprinodon_variegatus
ENSORLG00015017339	upf3a	51	51.121	ENSDARG00000000489	upf3b	91	51.230	Danio_rerio
ENSORLG00015017339	upf3a	58	76.458	ENSDARG00000069297	upf3a	100	76.458	Danio_rerio
ENSORLG00015017339	upf3a	51	57.957	ENSEASG00005021884	UPF3A	87	58.432	Equus_asinus_asinus
ENSORLG00015017339	upf3a	51	57.442	ENSECAG00000017141	UPF3A	87	57.442	Equus_caballus
ENSORLG00015017339	upf3a	58	76.972	ENSELUG00000011050	upf3a	100	76.972	Esox_lucius
ENSORLG00015017339	upf3a	52	57.306	ENSFCAG00000014602	UPF3A	91	56.335	Felis_catus
ENSORLG00015017339	upf3a	58	84.052	ENSGAFG00000021170	upf3a	100	84.052	Gambusia_affinis
ENSORLG00015017339	upf3a	58	86.825	ENSHBUG00000011325	upf3a	99	87.013	Haplochromis_burtoni
ENSORLG00015017339	upf3a	50	51.508	ENSHCOG00000017004	upf3b	93	50.812	Hippocampus_comes
ENSORLG00015017339	upf3a	55	75.450	ENSHCOG00000013985	upf3a	95	76.126	Hippocampus_comes
ENSORLG00015017339	upf3a	58	75.378	ENSIPUG00000023450	upf3a	100	75.378	Ictalurus_punctatus
ENSORLG00015017339	upf3a	58	85.776	ENSKMAG00000004381	upf3a	100	85.776	Kryptolebias_marmoratus
ENSORLG00015017339	upf3a	51	48.874	ENSKMAG00000020300	upf3b	92	50.805	Kryptolebias_marmoratus
ENSORLG00015017339	upf3a	57	79.431	ENSLBEG00000021570	upf3a	100	79.212	Labrus_bergylta
ENSORLG00015017339	upf3a	56	73.523	ENSLOCG00000002665	upf3a	98	73.523	Lepisosteus_oculatus
ENSORLG00015017339	upf3a	51	56.635	ENSMFAG00000045016	UPF3A	81	59.269	Macaca_fascicularis
ENSORLG00015017339	upf3a	50	58.621	ENSMMUG00000007449	UPF3A	88	58.637	Macaca_mulatta
ENSORLG00015017339	upf3a	50	58.519	ENSMNEG00000036402	UPF3A	84	58.519	Macaca_nemestrina
ENSORLG00015017339	upf3a	58	83.507	ENSMAMG00000018364	upf3a	100	83.507	Mastacembelus_armatus
ENSORLG00015017339	upf3a	58	83.784	ENSMZEG00005021571	upf3a	100	83.784	Maylandia_zebra
ENSORLG00015017339	upf3a	50	62.740	ENSMGAG00000014837	UPF3A	99	62.981	Meleagris_gallopavo
ENSORLG00015017339	upf3a	58	81.420	ENSMMOG00000019751	upf3a	100	81.420	Mola_mola
ENSORLG00015017339	upf3a	51	56.148	ENSMPUG00000009139	UPF3A	89	56.481	Mustela_putorius_furo
ENSORLG00015017339	upf3a	58	86.609	ENSNBRG00000000828	upf3a	100	86.609	Neolamprologus_brichardi
ENSORLG00015017339	upf3a	51	56.840	ENSNLEG00000007563	UPF3A	90	57.311	Nomascus_leucogenys
ENSORLG00015017339	upf3a	58	86.481	ENSONIG00000006817	upf3a	100	86.481	Oreochromis_niloticus
ENSORLG00015017339	upf3a	58	97.639	ENSORLG00000010911	upf3a	100	97.639	Oryzias_latipes
ENSORLG00015017339	upf3a	58	97.619	ENSORLG00020014317	upf3a	100	97.619	Oryzias_latipes_hni
ENSORLG00015017339	upf3a	58	95.022	ENSOMEG00000014425	upf3a	100	95.022	Oryzias_melastigma
ENSORLG00015017339	upf3a	52	57.078	ENSPPRG00000025062	UPF3A	91	57.078	Panthera_pardus
ENSORLG00015017339	upf3a	51	59.434	ENSPANG00000004346	UPF3A	90	59.434	Papio_anubis
ENSORLG00015017339	upf3a	51	74.396	ENSPKIG00000004422	upf3a	100	67.273	Paramormyrops_kingsleyae
ENSORLG00015017339	upf3a	58	78.557	ENSPMGG00000012696	upf3a	100	78.557	Periophthalmus_magnuspinnatus
ENSORLG00015017339	upf3a	58	84.665	ENSPFOG00000013222	upf3a	100	84.665	Poecilia_formosa
ENSORLG00015017339	upf3a	57	83.151	ENSPLAG00000011960	upf3a	100	83.151	Poecilia_latipinna
ENSORLG00015017339	upf3a	58	80.745	ENSPMEG00000000836	upf3a	100	80.745	Poecilia_mexicana
ENSORLG00015017339	upf3a	52	53.761	ENSPVAG00000005656	UPF3A	93	53.761	Pteropus_vampyrus
ENSORLG00015017339	upf3a	58	83.784	ENSPNYG00000011289	upf3a	100	83.784	Pundamilia_nyererei
ENSORLG00015017339	upf3a	58	76.407	ENSPNAG00000019532	upf3a	100	76.407	Pygocentrus_nattereri
ENSORLG00015017339	upf3a	58	68.683	ENSSFOG00015021851	upf3a	100	68.683	Scleropages_formosus
ENSORLG00015017339	upf3a	58	79.430	ENSSMAG00000003858	upf3a	100	80.652	Scophthalmus_maximus
ENSORLG00015017339	upf3a	58	84.342	ENSSDUG00000009680	upf3a	100	84.342	Seriola_dumerili
ENSORLG00015017339	upf3a	58	87.257	ENSSLDG00000009700	upf3a	100	87.257	Seriola_lalandi_dorsalis
ENSORLG00015017339	upf3a	58	81.641	ENSSPAG00000007938	upf3a	100	86.609	Stegastes_partitus
ENSORLG00015017339	upf3a	58	79.050	ENSTRUG00000012730	upf3a	100	79.050	Takifugu_rubripes
ENSORLG00015017339	upf3a	50	55.746	ENSXETG00000002572	upf3a	92	57.107	Xenopus_tropicalis
ENSORLG00015017339	upf3a	58	84.483	ENSXMAG00000013452	upf3a	100	84.483	Xiphophorus_maculatus