EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015017355 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 40934 bases
Position: chr2:16131269-16172202
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015016296	R3H	PF01424.22	6.9e-13	1	1
ENSORLP00015032457	R3H	PF01424.22	7.2e-13	1	1
ENSORLP00015032496	R3H	PF01424.22	7.6e-13	1	1
ENSORLP00015016349	R3H	PF01424.22	7.8e-13	1	1
ENSORLP00015016361	R3H	PF01424.22	7.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015034288	-	4985	-	ENSORLP00015016361	997 (aa)	-	-
ENSORLT00015034283	-	5352	-	ENSORLP00015032496	983 (aa)	-	-
ENSORLT00015034249	-	3408	-	ENSORLP00015016296	936 (aa)	-	-
ENSORLT00015024471	-	3465	-	ENSORLP00015032457	955 (aa)	-	-
ENSORLT00015024501	-	4967	-	ENSORLP00015016349	991 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015017355	r3hdm1	81	57.558	ENSORLG00015012735	r3hdm2	75	55.307

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017355	r3hdm1	91	61.067	ENSG00000048991	R3HDM1	97	65.125	Homo_sapiens
ENSORLG00015017355	r3hdm1	100	77.011	ENSAPOG00000020850	r3hdm1	98	75.949	Acanthochromis_polyacanthus
ENSORLG00015017355	r3hdm1	99	46.933	ENSAMEG00000014886	R3HDM1	89	46.866	Ailuropoda_melanoleuca
ENSORLG00015017355	r3hdm1	100	76.600	ENSAOCG00000005192	r3hdm1	100	76.218	Amphiprion_ocellaris
ENSORLG00015017355	r3hdm1	100	74.131	ENSAPEG00000016108	r3hdm1	100	75.437	Amphiprion_percula
ENSORLG00015017355	r3hdm1	100	71.914	ENSATEG00000000232	r3hdm1	100	74.066	Anabas_testudineus
ENSORLG00015017355	r3hdm1	99	47.007	ENSAPLG00000015231	R3HDM1	89	46.875	Anas_platyrhynchos
ENSORLG00015017355	r3hdm1	99	46.927	ENSACAG00000001676	R3HDM1	89	46.555	Anolis_carolinensis
ENSORLG00015017355	r3hdm1	91	61.333	ENSANAG00000035334	R3HDM1	89	61.333	Aotus_nancymaae
ENSORLG00015017355	r3hdm1	100	73.461	ENSACLG00000027282	r3hdm1	100	74.585	Astatotilapia_calliptera
ENSORLG00015017355	r3hdm1	85	70.382	ENSAMXG00000003536	r3hdm1	82	68.169	Astyanax_mexicanus
ENSORLG00015017355	r3hdm1	85	73.026	ENSAMXG00000012861	R3HDM1	89	62.712	Astyanax_mexicanus
ENSORLG00015017355	r3hdm1	99	46.402	ENSBTAG00000013302	R3HDM1	89	45.682	Bos_taurus
ENSORLG00015017355	r3hdm1	91	61.067	ENSCJAG00000011718	R3HDM1	89	61.067	Callithrix_jacchus
ENSORLG00015017355	r3hdm1	99	46.712	ENSCAFG00000005075	R3HDM1	89	46.467	Canis_familiaris
ENSORLG00015017355	r3hdm1	99	46.712	ENSCAFG00020016119	R3HDM1	92	57.611	Canis_lupus_dingo
ENSORLG00015017355	r3hdm1	99	46.588	ENSCHIG00000020851	R3HDM1	89	46.086	Capra_hircus
ENSORLG00015017355	r3hdm1	99	45.626	ENSCPOG00000012784	R3HDM1	100	61.433	Cavia_porcellus
ENSORLG00015017355	r3hdm1	91	60.533	ENSCCAG00000027199	R3HDM1	89	60.533	Cebus_capucinus
ENSORLG00015017355	r3hdm1	98	57.361	ENSCATG00000023642	R3HDM1	89	60.800	Cercocebus_atys
ENSORLG00015017355	r3hdm1	99	46.161	ENSCLAG00000007962	R3HDM1	100	63.481	Chinchilla_lanigera
ENSORLG00015017355	r3hdm1	99	45.650	ENSCSAG00000016356	R3HDM1	89	45.953	Chlorocebus_sabaeus
ENSORLG00015017355	r3hdm1	80	65.116	ENSCHOG00000013638	R3HDM1	64	65.116	Choloepus_hoffmanni
ENSORLG00015017355	r3hdm1	82	69.784	ENSCPBG00000009645	R3HDM1	88	69.784	Chrysemys_picta_bellii
ENSORLG00015017355	r3hdm1	91	60.800	ENSCANG00000034748	R3HDM1	89	60.800	Colobus_angolensis_palliatus
ENSORLG00015017355	r3hdm1	99	46.604	ENSCGRG00001012357	R3hdm1	86	45.682	Cricetulus_griseus_chok1gshd
ENSORLG00015017355	r3hdm1	99	46.604	ENSCGRG00000012080	R3hdm1	100	64.846	Cricetulus_griseus_crigri
ENSORLG00015017355	r3hdm1	100	62.974	ENSCSEG00000008944	r3hdm1	100	63.557	Cynoglossus_semilaevis
ENSORLG00015017355	r3hdm1	100	74.372	ENSCVAG00000007582	r3hdm1	100	73.769	Cyprinodon_variegatus
ENSORLG00015017355	r3hdm1	53	37.051	ENSDARG00000061081	arpp21	56	50.226	Danio_rerio
ENSORLG00015017355	r3hdm1	99	44.804	ENSDNOG00000000771	R3HDM1	89	44.326	Dasypus_novemcinctus
ENSORLG00015017355	r3hdm1	91	56.522	ENSETEG00000013606	R3HDM1	84	56.917	Echinops_telfairi
ENSORLG00015017355	r3hdm1	52	44.129	ENSEBUG00000014746	arpp21	99	39.820	Eptatretus_burgeri
ENSORLG00015017355	r3hdm1	85	67.742	ENSEASG00005007392	R3HDM1	88	60.621	Equus_asinus_asinus
ENSORLG00015017355	r3hdm1	85	67.742	ENSECAG00000019114	R3HDM1	88	60.621	Equus_caballus
ENSORLG00015017355	r3hdm1	93	49.413	ENSELUG00000014413	r3hdm1	86	50.266	Esox_lucius
ENSORLG00015017355	r3hdm1	95	50.794	ENSELUG00000004909	R3HDM1	86	50.751	Esox_lucius
ENSORLG00015017355	r3hdm1	85	67.742	ENSFCAG00000027113	R3HDM1	88	60.143	Felis_catus
ENSORLG00015017355	r3hdm1	84	49.327	ENSFALG00000013731	R3HDM1	90	44.732	Ficedula_albicollis
ENSORLG00015017355	r3hdm1	99	45.868	ENSFDAG00000016478	R3HDM1	100	64.164	Fukomys_damarensis
ENSORLG00015017355	r3hdm1	100	74.308	ENSFHEG00000018713	r3hdm1	100	73.639	Fundulus_heteroclitus
ENSORLG00015017355	r3hdm1	62	68.848	ENSGMOG00000006042	-	80	55.398	Gadus_morhua
ENSORLG00015017355	r3hdm1	91	61.867	ENSGALG00000012246	R3HDM1	86	65.461	Gallus_gallus
ENSORLG00015017355	r3hdm1	100	70.938	ENSGAFG00000006203	r3hdm1	100	72.199	Gambusia_affinis
ENSORLG00015017355	r3hdm1	95	72.910	ENSGACG00000014925	r3hdm1	95	72.581	Gasterosteus_aculeatus
ENSORLG00015017355	r3hdm1	85	65.484	ENSGAGG00000007840	R3HDM1	84	58.477	Gopherus_agassizii
ENSORLG00015017355	r3hdm1	91	61.067	ENSGGOG00000008156	R3HDM1	89	61.067	Gorilla_gorilla
ENSORLG00015017355	r3hdm1	56	78.919	ENSHBUG00000015737	R3HDM1	92	82.046	Haplochromis_burtoni
ENSORLG00015017355	r3hdm1	99	46.786	ENSHGLG00000015718	R3HDM1	100	64.041	Heterocephalus_glaber_female
ENSORLG00015017355	r3hdm1	98	38.389	ENSHGLG00100015374	-	91	38.668	Heterocephalus_glaber_male
ENSORLG00015017355	r3hdm1	99	46.692	ENSHGLG00100003184	-	100	64.384	Heterocephalus_glaber_male
ENSORLG00015017355	r3hdm1	100	60.992	ENSHCOG00000013366	r3hdm1	100	62.539	Hippocampus_comes
ENSORLG00015017355	r3hdm1	84	70.126	ENSIPUG00000001676	R3HDM1	100	59.226	Ictalurus_punctatus
ENSORLG00015017355	r3hdm1	83	70.432	ENSIPUG00000013629	r3hdm1	81	69.435	Ictalurus_punctatus
ENSORLG00015017355	r3hdm1	99	46.154	ENSSTOG00000007572	R3HDM1	100	64.505	Ictidomys_tridecemlineatus
ENSORLG00015017355	r3hdm1	50	75.155	ENSLBEG00000027981	-	99	78.982	Labrus_bergylta
ENSORLG00015017355	r3hdm1	99	47.181	ENSLACG00000005334	R3HDM1	87	49.299	Latimeria_chalumnae
ENSORLG00015017355	r3hdm1	99	49.509	ENSLOCG00000001641	r3hdm1	90	48.505	Lepisosteus_oculatus
ENSORLG00015017355	r3hdm1	85	66.774	ENSLAFG00000009065	R3HDM1	85	65.057	Loxodonta_africana
ENSORLG00015017355	r3hdm1	85	68.065	ENSMFAG00000030331	R3HDM1	89	61.067	Macaca_fascicularis
ENSORLG00015017355	r3hdm1	91	61.067	ENSMMUG00000009844	R3HDM1	89	61.067	Macaca_mulatta
ENSORLG00015017355	r3hdm1	85	68.065	ENSMNEG00000027793	R3HDM1	89	61.067	Macaca_nemestrina
ENSORLG00015017355	r3hdm1	91	61.067	ENSMLEG00000043189	R3HDM1	89	61.067	Mandrillus_leucophaeus
ENSORLG00015017355	r3hdm1	100	75.400	ENSMAMG00000004532	r3hdm1	100	75.000	Mastacembelus_armatus
ENSORLG00015017355	r3hdm1	100	75.976	ENSMZEG00005003157	r3hdm1	100	75.375	Maylandia_zebra
ENSORLG00015017355	r3hdm1	96	48.049	ENSMGAG00000012461	R3HDM1	88	46.829	Meleagris_gallopavo
ENSORLG00015017355	r3hdm1	99	46.667	ENSMAUG00000010315	R3hdm1	100	64.846	Mesocricetus_auratus
ENSORLG00015017355	r3hdm1	91	61.333	ENSMICG00000042655	-	93	61.333	Microcebus_murinus
ENSORLG00015017355	r3hdm1	91	61.600	ENSMICG00000005900	-	89	61.600	Microcebus_murinus
ENSORLG00015017355	r3hdm1	52	58.509	ENSMOCG00000019833	-	100	64.505	Microtus_ochrogaster
ENSORLG00015017355	r3hdm1	99	45.055	ENSMODG00000000923	R3HDM1	96	44.872	Monodelphis_domestica
ENSORLG00015017355	r3hdm1	100	73.740	ENSMALG00000009000	r3hdm1	90	73.353	Monopterus_albus
ENSORLG00015017355	r3hdm1	99	46.837	MGP_CAROLIEiJ_G0014543	R3hdm1	100	65.188	Mus_caroli
ENSORLG00015017355	r3hdm1	99	46.837	ENSMUSG00000056211	R3hdm1	100	65.188	Mus_musculus
ENSORLG00015017355	r3hdm1	99	46.811	MGP_PahariEiJ_G0027779	R3hdm1	100	65.188	Mus_pahari
ENSORLG00015017355	r3hdm1	99	46.837	MGP_SPRETEiJ_G0015350	R3hdm1	100	65.188	Mus_spretus
ENSORLG00015017355	r3hdm1	99	46.634	ENSMPUG00000002412	R3HDM1	89	45.969	Mustela_putorius_furo
ENSORLG00015017355	r3hdm1	99	46.380	ENSMLUG00000013824	R3HDM1	89	45.298	Myotis_lucifugus
ENSORLG00015017355	r3hdm1	91	61.067	ENSNLEG00000008622	R3HDM1	89	61.067	Nomascus_leucogenys
ENSORLG00015017355	r3hdm1	94	42.023	ENSMEUG00000011784	R3HDM1	89	42.857	Notamacropus_eugenii
ENSORLG00015017355	r3hdm1	99	45.352	ENSODEG00000008607	R3HDM1	100	64.164	Octodon_degus
ENSORLG00015017355	r3hdm1	95	74.587	ENSONIG00000012017	r3hdm1	89	73.967	Oreochromis_niloticus
ENSORLG00015017355	r3hdm1	99	46.334	ENSOANG00000007987	R3HDM1	89	46.334	Ornithorhynchus_anatinus
ENSORLG00015017355	r3hdm1	99	46.634	ENSOCUG00000017366	R3HDM1	97	46.221	Oryctolagus_cuniculus
ENSORLG00015017355	r3hdm1	100	98.397	ENSORLG00000004297	r3hdm1	100	98.397	Oryzias_latipes
ENSORLG00015017355	r3hdm1	55	90.075	ENSOMEG00000003882	-	99	89.888	Oryzias_melastigma
ENSORLG00015017355	r3hdm1	99	47.192	ENSOGAG00000003136	R3HDM1	89	46.550	Otolemur_garnettii
ENSORLG00015017355	r3hdm1	99	46.785	ENSOARG00000010788	R3HDM1	89	45.870	Ovis_aries
ENSORLG00015017355	r3hdm1	91	61.067	ENSPPAG00000027858	R3HDM1	89	61.067	Pan_paniscus
ENSORLG00015017355	r3hdm1	91	60.800	ENSPPRG00000002626	R3HDM1	89	60.800	Panthera_pardus
ENSORLG00015017355	r3hdm1	91	61.067	ENSPTIG00000016581	R3HDM1	89	61.067	Panthera_tigris_altaica
ENSORLG00015017355	r3hdm1	91	61.067	ENSPTRG00000012494	R3HDM1	89	61.067	Pan_troglodytes
ENSORLG00015017355	r3hdm1	91	61.067	ENSPANG00000026448	R3HDM1	89	61.067	Papio_anubis
ENSORLG00015017355	r3hdm1	87	71.523	ENSPKIG00000004328	r3hdm1	78	70.530	Paramormyrops_kingsleyae
ENSORLG00015017355	r3hdm1	99	47.633	ENSPSIG00000012915	R3HDM1	88	47.301	Pelodiscus_sinensis
ENSORLG00015017355	r3hdm1	99	46.887	ENSPEMG00000015187	R3hdm1	100	64.846	Peromyscus_maniculatus_bairdii
ENSORLG00015017355	r3hdm1	82	40.180	ENSPMAG00000003369	-	95	39.489	Petromyzon_marinus
ENSORLG00015017355	r3hdm1	85	66.452	ENSPCIG00000002491	R3HDM1	88	58.432	Phascolarctos_cinereus
ENSORLG00015017355	r3hdm1	100	73.206	ENSPFOG00000015036	r3hdm1	100	72.344	Poecilia_formosa
ENSORLG00015017355	r3hdm1	100	71.227	ENSPLAG00000018042	r3hdm1	100	71.694	Poecilia_latipinna
ENSORLG00015017355	r3hdm1	100	71.198	ENSPMEG00000023947	r3hdm1	100	71.946	Poecilia_mexicana
ENSORLG00015017355	r3hdm1	100	72.500	ENSPREG00000007902	r3hdm1	100	72.300	Poecilia_reticulata
ENSORLG00015017355	r3hdm1	99	45.278	ENSPPYG00000012815	R3HDM1	89	45.894	Pongo_abelii
ENSORLG00015017355	r3hdm1	81	69.298	ENSPCAG00000006208	R3HDM1	66	69.298	Procavia_capensis
ENSORLG00015017355	r3hdm1	91	58.649	ENSPCOG00000012698	R3HDM1	79	70.758	Propithecus_coquereli
ENSORLG00015017355	r3hdm1	80	44.322	ENSPVAG00000006098	R3HDM1	89	40.465	Pteropus_vampyrus
ENSORLG00015017355	r3hdm1	84	69.628	ENSPNAG00000013952	r3hdm1	82	69.318	Pygocentrus_nattereri
ENSORLG00015017355	r3hdm1	86	70.874	ENSPNAG00000005436	R3HDM1	89	66.176	Pygocentrus_nattereri
ENSORLG00015017355	r3hdm1	62	48.265	ENSPNAG00000004162	arpp21	83	48.125	Pygocentrus_nattereri
ENSORLG00015017355	r3hdm1	99	47.070	ENSRNOG00000004099	R3hdm1	89	45.888	Rattus_norvegicus
ENSORLG00015017355	r3hdm1	82	70.863	ENSRBIG00000033317	R3HDM1	88	70.863	Rhinopithecus_bieti
ENSORLG00015017355	r3hdm1	91	61.067	ENSRROG00000034534	R3HDM1	89	61.067	Rhinopithecus_roxellana
ENSORLG00015017355	r3hdm1	91	61.067	ENSSBOG00000020389	R3HDM1	89	61.067	Saimiri_boliviensis_boliviensis
ENSORLG00015017355	r3hdm1	100	45.691	ENSSHAG00000016999	R3HDM1	89	46.334	Sarcophilus_harrisii
ENSORLG00015017355	r3hdm1	90	73.754	ENSSFOG00015014134	r3hdm1	79	72.757	Scleropages_formosus
ENSORLG00015017355	r3hdm1	97	52.313	ENSSFOG00015019851	-	94	57.480	Scleropages_formosus
ENSORLG00015017355	r3hdm1	100	71.640	ENSSMAG00000001669	r3hdm1	90	70.949	Scophthalmus_maximus
ENSORLG00015017355	r3hdm1	100	74.802	ENSSDUG00000010749	r3hdm1	100	74.605	Seriola_dumerili
ENSORLG00015017355	r3hdm1	100	75.746	ENSSLDG00000004499	r3hdm1	90	75.447	Seriola_lalandi_dorsalis
ENSORLG00015017355	r3hdm1	55	52.769	ENSSARG00000000352	-	50	53.420	Sorex_araneus
ENSORLG00015017355	r3hdm1	99	46.961	ENSSPUG00000004167	R3HDM1	88	47.296	Sphenodon_punctatus
ENSORLG00015017355	r3hdm1	100	76.946	ENSSPAG00000004648	r3hdm1	100	76.355	Stegastes_partitus
ENSORLG00015017355	r3hdm1	91	58.871	ENSSSCG00000015692	R3HDM1	89	58.871	Sus_scrofa
ENSORLG00015017355	r3hdm1	100	44.197	ENSTGUG00000011750	R3HDM1	89	47.019	Taeniopygia_guttata
ENSORLG00015017355	r3hdm1	100	67.333	ENSTRUG00000011654	r3hdm1	99	67.276	Takifugu_rubripes
ENSORLG00015017355	r3hdm1	98	65.041	ENSTNIG00000010362	r3hdm1	99	64.431	Tetraodon_nigroviridis
ENSORLG00015017355	r3hdm1	79	50.715	ENSTTRG00000003935	R3HDM1	67	50.323	Tursiops_truncatus
ENSORLG00015017355	r3hdm1	67	62.133	ENSUAMG00000024806	R3HDM1	92	57.280	Ursus_americanus
ENSORLG00015017355	r3hdm1	91	61.333	ENSUMAG00000005552	R3HDM1	88	61.333	Ursus_maritimus
ENSORLG00015017355	r3hdm1	85	47.387	ENSVPAG00000007333	R3HDM1	73	47.524	Vicugna_pacos
ENSORLG00015017355	r3hdm1	91	61.170	ENSVVUG00000006457	R3HDM1	89	61.170	Vulpes_vulpes
ENSORLG00015017355	r3hdm1	99	43.500	ENSXETG00000019330	r3hdm1	99	43.500	Xenopus_tropicalis
ENSORLG00015017355	r3hdm1	76	71.757	ENSXCOG00000017448	r3hdm1	92	71.448	Xiphophorus_couchianus
ENSORLG00015017355	r3hdm1	100	73.025	ENSXMAG00000007885	r3hdm1	100	72.929	Xiphophorus_maculatus