EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015017411 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 4851 bases
Position: chr9:19007102-19011952
Accession: 101157948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015032522	PRP21_like_P	PF12230.8	1.1e-52	1	1
ENSORLP00015032522	Surp	PF01805.20	6.3e-46	1	2
ENSORLP00015032522	Surp	PF01805.20	6.3e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015034300	-	2725	XM_004072522	ENSORLP00015032522	781 (aa)	XP_004072570	-

Gene Model

Click here to download ENSORLG00015017411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017411's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017411	sf3a1	99	84.258	ENSG00000099995	SF3A1	100	82.264	Homo_sapiens
ENSORLG00015017411	sf3a1	100	93.003	ENSAPOG00000020465	sf3a1	100	93.257	Acanthochromis_polyacanthus
ENSORLG00015017411	sf3a1	97	84.706	ENSAMEG00000007737	SF3A1	100	81.932	Ailuropoda_melanoleuca
ENSORLG00015017411	sf3a1	100	93.130	ENSACIG00000020672	sf3a1	100	93.384	Amphilophus_citrinellus
ENSORLG00015017411	sf3a1	100	92.875	ENSAOCG00000003060	sf3a1	100	93.130	Amphiprion_ocellaris
ENSORLG00015017411	sf3a1	100	93.003	ENSAPEG00000010735	sf3a1	100	93.257	Amphiprion_percula
ENSORLG00015017411	sf3a1	97	92.680	ENSATEG00000021201	sf3a1	96	92.941	Anabas_testudineus
ENSORLG00015017411	sf3a1	96	84.941	ENSAPLG00000009057	SF3A1	100	82.843	Anas_platyrhynchos
ENSORLG00015017411	sf3a1	100	80.074	ENSACAG00000009415	SF3A1	100	80.322	Anolis_carolinensis
ENSORLG00015017411	sf3a1	99	83.632	ENSANAG00000032045	SF3A1	100	82.390	Aotus_nancymaae
ENSORLG00015017411	sf3a1	100	92.229	ENSACLG00000012622	sf3a1	100	91.975	Astatotilapia_calliptera
ENSORLG00015017411	sf3a1	99	87.117	ENSAMXG00000005382	sf3a1	99	87.245	Astyanax_mexicanus
ENSORLG00015017411	sf3a1	99	83.871	ENSBTAG00000003390	SF3A1	100	82.138	Bos_taurus
ENSORLG00015017411	sf3a1	82	45.386	WBGene00004188	prp-21	59	51.195	Caenorhabditis_elegans
ENSORLG00015017411	sf3a1	99	83.871	ENSCJAG00000010370	SF3A1	100	82.264	Callithrix_jacchus
ENSORLG00015017411	sf3a1	99	83.742	ENSCAFG00000012559	SF3A1	100	82.138	Canis_familiaris
ENSORLG00015017411	sf3a1	99	83.742	ENSCAFG00020000838	SF3A1	100	82.138	Canis_lupus_dingo
ENSORLG00015017411	sf3a1	99	84.000	ENSCHIG00000018642	SF3A1	100	82.264	Capra_hircus
ENSORLG00015017411	sf3a1	99	84.000	ENSTSYG00000004739	SF3A1	100	82.390	Carlito_syrichta
ENSORLG00015017411	sf3a1	94	68.548	ENSCAPG00000015414	SF3A1	97	67.876	Cavia_aperea
ENSORLG00015017411	sf3a1	99	84.129	ENSCPOG00000014589	SF3A1	100	82.138	Cavia_porcellus
ENSORLG00015017411	sf3a1	99	83.632	ENSCCAG00000032006	SF3A1	100	82.390	Cebus_capucinus
ENSORLG00015017411	sf3a1	99	83.871	ENSCATG00000029241	SF3A1	100	82.264	Cercocebus_atys
ENSORLG00015017411	sf3a1	99	84.000	ENSCLAG00000006508	SF3A1	100	82.516	Chinchilla_lanigera
ENSORLG00015017411	sf3a1	99	83.871	ENSCSAG00000009470	SF3A1	100	82.264	Chlorocebus_sabaeus
ENSORLG00015017411	sf3a1	59	90.476	ENSCHOG00000005201	SF3A1	62	90.476	Choloepus_hoffmanni
ENSORLG00015017411	sf3a1	100	83.565	ENSCPBG00000007595	SF3A1	100	82.427	Chrysemys_picta_bellii
ENSORLG00015017411	sf3a1	97	53.161	ENSCING00000008526	-	66	58.779	Ciona_intestinalis
ENSORLG00015017411	sf3a1	92	64.035	ENSCSAVG00000005608	-	85	43.478	Ciona_savignyi
ENSORLG00015017411	sf3a1	99	83.871	ENSCANG00000033564	SF3A1	100	82.264	Colobus_angolensis_palliatus
ENSORLG00015017411	sf3a1	97	84.868	ENSCGRG00001008933	Sf3a1	100	82.013	Cricetulus_griseus_chok1gshd
ENSORLG00015017411	sf3a1	97	84.868	ENSCGRG00000006127	Sf3a1	100	82.013	Cricetulus_griseus_crigri
ENSORLG00015017411	sf3a1	100	89.581	ENSCSEG00000010792	sf3a1	100	88.945	Cynoglossus_semilaevis
ENSORLG00015017411	sf3a1	100	91.233	ENSCVAG00000004560	sf3a1	100	91.360	Cyprinodon_variegatus
ENSORLG00015017411	sf3a1	100	86.768	ENSDARG00000041887	sf3a1	100	89.714	Danio_rerio
ENSORLG00015017411	sf3a1	99	84.021	ENSDNOG00000010629	SF3A1	100	82.035	Dasypus_novemcinctus
ENSORLG00015017411	sf3a1	99	84.387	ENSDORG00000005613	Sf3a1	100	82.390	Dipodomys_ordii
ENSORLG00015017411	sf3a1	85	83.058	ENSETEG00000017194	SF3A1	95	83.383	Echinops_telfairi
ENSORLG00015017411	sf3a1	97	67.170	ENSEBUG00000001285	sf3a1	95	68.388	Eptatretus_burgeri
ENSORLG00015017411	sf3a1	99	83.504	ENSEASG00005010254	SF3A1	100	82.516	Equus_asinus_asinus
ENSORLG00015017411	sf3a1	99	83.504	ENSECAG00000023962	SF3A1	100	82.516	Equus_caballus
ENSORLG00015017411	sf3a1	74	90.164	ENSEEUG00000003159	SF3A1	81	90.164	Erinaceus_europaeus
ENSORLG00015017411	sf3a1	100	86.058	ENSELUG00000022578	sf3a1	100	86.692	Esox_lucius
ENSORLG00015017411	sf3a1	99	83.742	ENSFCAG00000011932	SF3A1	100	82.138	Felis_catus
ENSORLG00015017411	sf3a1	96	83.995	ENSFALG00000006944	SF3A1	100	81.967	Ficedula_albicollis
ENSORLG00015017411	sf3a1	99	83.871	ENSFDAG00000009560	SF3A1	100	82.264	Fukomys_damarensis
ENSORLG00015017411	sf3a1	100	91.741	ENSFHEG00000010866	sf3a1	100	93.139	Fundulus_heteroclitus
ENSORLG00015017411	sf3a1	100	86.497	ENSGMOG00000016024	sf3a1	100	85.805	Gadus_morhua
ENSORLG00015017411	sf3a1	96	84.921	ENSGALG00000007937	SF3A1	100	82.598	Gallus_gallus
ENSORLG00015017411	sf3a1	100	92.884	ENSGAFG00000009111	sf3a1	100	93.139	Gambusia_affinis
ENSORLG00015017411	sf3a1	100	88.748	ENSGACG00000011893	sf3a1	100	87.863	Gasterosteus_aculeatus
ENSORLG00015017411	sf3a1	96	83.113	ENSGAGG00000000762	SF3A1	99	81.926	Gopherus_agassizii
ENSORLG00015017411	sf3a1	99	84.258	ENSGGOG00000012631	SF3A1	100	82.264	Gorilla_gorilla
ENSORLG00015017411	sf3a1	100	93.121	ENSHBUG00000015795	sf3a1	100	91.847	Haplochromis_burtoni
ENSORLG00015017411	sf3a1	99	83.871	ENSHGLG00000007907	SF3A1	100	82.264	Heterocephalus_glaber_female
ENSORLG00015017411	sf3a1	99	83.871	ENSHGLG00100013799	SF3A1	100	82.264	Heterocephalus_glaber_male
ENSORLG00015017411	sf3a1	100	88.295	ENSHCOG00000015423	sf3a1	100	88.168	Hippocampus_comes
ENSORLG00015017411	sf3a1	98	84.347	ENSIPUG00000002470	sf3a1	99	84.088	Ictalurus_punctatus
ENSORLG00015017411	sf3a1	98	84.367	ENSSTOG00000013892	SF3A1	100	82.390	Ictidomys_tridecemlineatus
ENSORLG00015017411	sf3a1	98	84.109	ENSJJAG00000022566	Sf3a1	100	82.538	Jaculus_jaculus
ENSORLG00015017411	sf3a1	100	91.094	ENSKMAG00000002400	sf3a1	100	91.603	Kryptolebias_marmoratus
ENSORLG00015017411	sf3a1	100	92.102	ENSLBEG00000022974	sf3a1	100	91.847	Labrus_bergylta
ENSORLG00015017411	sf3a1	100	83.165	ENSLACG00000003565	SF3A1	100	83.291	Latimeria_chalumnae
ENSORLG00015017411	sf3a1	100	86.692	ENSLOCG00000008251	sf3a1	99	85.551	Lepisosteus_oculatus
ENSORLG00015017411	sf3a1	97	55.627	ENSLAFG00000026032	-	97	55.155	Loxodonta_africana
ENSORLG00015017411	sf3a1	99	83.742	ENSLAFG00000000448	SF3A1	100	82.138	Loxodonta_africana
ENSORLG00015017411	sf3a1	99	83.742	ENSMFAG00000031979	SF3A1	100	82.138	Macaca_fascicularis
ENSORLG00015017411	sf3a1	99	83.742	ENSMMUG00000005547	SF3A1	100	82.138	Macaca_mulatta
ENSORLG00015017411	sf3a1	99	83.871	ENSMNEG00000037229	SF3A1	100	82.264	Macaca_nemestrina
ENSORLG00015017411	sf3a1	99	83.871	ENSMLEG00000041908	SF3A1	100	82.264	Mandrillus_leucophaeus
ENSORLG00015017411	sf3a1	98	91.580	ENSMAMG00000006460	sf3a1	97	91.839	Mastacembelus_armatus
ENSORLG00015017411	sf3a1	100	92.229	ENSMZEG00005009633	sf3a1	100	91.975	Maylandia_zebra
ENSORLG00015017411	sf3a1	96	84.921	ENSMGAG00000001330	SF3A1	99	83.724	Meleagris_gallopavo
ENSORLG00015017411	sf3a1	93	80.790	ENSMAUG00000020317	Sf3a1	100	76.582	Mesocricetus_auratus
ENSORLG00015017411	sf3a1	99	83.871	ENSMICG00000010038	SF3A1	100	82.138	Microcebus_murinus
ENSORLG00015017411	sf3a1	99	83.871	ENSMOCG00000008438	Sf3a1	100	82.264	Microtus_ochrogaster
ENSORLG00015017411	sf3a1	100	89.172	ENSMMOG00000015588	sf3a1	99	89.299	Mola_mola
ENSORLG00015017411	sf3a1	97	84.424	ENSMODG00000009270	SF3A1	100	82.219	Monodelphis_domestica
ENSORLG00015017411	sf3a1	100	90.609	ENSMALG00000000148	sf3a1	99	92.507	Monopterus_albus
ENSORLG00015017411	sf3a1	97	84.737	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.071	Mus_caroli
ENSORLG00015017411	sf3a1	97	84.737	ENSMUSG00000002129	Sf3a1	99	82.071	Mus_musculus
ENSORLG00015017411	sf3a1	97	84.737	MGP_PahariEiJ_G0016862	Sf3a1	99	82.197	Mus_pahari
ENSORLG00015017411	sf3a1	97	84.737	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.071	Mus_spretus
ENSORLG00015017411	sf3a1	99	83.484	ENSMPUG00000013144	SF3A1	100	82.264	Mustela_putorius_furo
ENSORLG00015017411	sf3a1	99	83.871	ENSMLUG00000002139	SF3A1	100	82.264	Myotis_lucifugus
ENSORLG00015017411	sf3a1	99	84.015	ENSNGAG00000016977	Sf3a1	100	82.516	Nannospalax_galili
ENSORLG00015017411	sf3a1	100	92.757	ENSNBRG00000016642	sf3a1	100	91.487	Neolamprologus_brichardi
ENSORLG00015017411	sf3a1	99	83.871	ENSNLEG00000003686	SF3A1	100	82.264	Nomascus_leucogenys
ENSORLG00015017411	sf3a1	93	76.955	ENSMEUG00000008741	SF3A1	100	75.297	Notamacropus_eugenii
ENSORLG00015017411	sf3a1	97	85.490	ENSOPRG00000016636	SF3A1	100	83.291	Ochotona_princeps
ENSORLG00015017411	sf3a1	99	83.871	ENSODEG00000002571	SF3A1	100	82.242	Octodon_degus
ENSORLG00015017411	sf3a1	100	93.376	ENSONIG00000010848	sf3a1	100	93.248	Oreochromis_niloticus
ENSORLG00015017411	sf3a1	99	83.742	ENSOCUG00000007633	SF3A1	100	82.516	Oryctolagus_cuniculus
ENSORLG00015017411	sf3a1	96	98.797	ENSORLG00000013050	sf3a1	99	98.797	Oryzias_latipes
ENSORLG00015017411	sf3a1	99	95.876	ENSORLG00020003236	sf3a1	98	95.876	Oryzias_latipes_hni
ENSORLG00015017411	sf3a1	100	96.046	ENSOMEG00000013362	sf3a1	100	96.046	Oryzias_melastigma
ENSORLG00015017411	sf3a1	99	83.871	ENSOGAG00000012931	SF3A1	100	82.264	Otolemur_garnettii
ENSORLG00015017411	sf3a1	99	82.710	ENSOARG00000006849	SF3A1	100	81.006	Ovis_aries
ENSORLG00015017411	sf3a1	99	83.355	ENSPPAG00000041790	SF3A1	100	81.384	Pan_paniscus
ENSORLG00015017411	sf3a1	99	83.742	ENSPPRG00000004391	SF3A1	100	82.138	Panthera_pardus
ENSORLG00015017411	sf3a1	98	83.721	ENSPTIG00000000844	SF3A1	100	83.204	Panthera_tigris_altaica
ENSORLG00015017411	sf3a1	99	84.258	ENSPTRG00000014240	SF3A1	100	82.264	Pan_troglodytes
ENSORLG00015017411	sf3a1	99	83.871	ENSPANG00000020772	SF3A1	100	82.264	Papio_anubis
ENSORLG00015017411	sf3a1	87	91.209	ENSPSIG00000012803	SF3A1	97	91.209	Pelodiscus_sinensis
ENSORLG00015017411	sf3a1	97	88.482	ENSPMGG00000023096	sf3a1	100	88.743	Periophthalmus_magnuspinnatus
ENSORLG00015017411	sf3a1	97	85.000	ENSPEMG00000009494	Sf3a1	100	82.138	Peromyscus_maniculatus_bairdii
ENSORLG00015017411	sf3a1	69	77.273	ENSPMAG00000007139	-	93	76.234	Petromyzon_marinus
ENSORLG00015017411	sf3a1	97	84.162	ENSPCIG00000022692	SF3A1	100	82.472	Phascolarctos_cinereus
ENSORLG00015017411	sf3a1	100	83.057	ENSPFOG00000016768	sf3a1	100	83.057	Poecilia_formosa
ENSORLG00015017411	sf3a1	100	93.139	ENSPLAG00000017268	sf3a1	100	93.520	Poecilia_latipinna
ENSORLG00015017411	sf3a1	96	93.534	ENSPMEG00000019811	sf3a1	100	92.180	Poecilia_mexicana
ENSORLG00015017411	sf3a1	100	93.139	ENSPREG00000010347	sf3a1	100	93.393	Poecilia_reticulata
ENSORLG00015017411	sf3a1	99	83.871	ENSPPYG00000011707	SF3A1	100	82.264	Pongo_abelii
ENSORLG00015017411	sf3a1	58	84.711	ENSPCAG00000003266	SF3A1	57	84.711	Procavia_capensis
ENSORLG00015017411	sf3a1	99	83.613	ENSPCOG00000026630	SF3A1	100	81.887	Propithecus_coquereli
ENSORLG00015017411	sf3a1	95	84.070	ENSPVAG00000017719	SF3A1	94	83.534	Pteropus_vampyrus
ENSORLG00015017411	sf3a1	100	92.994	ENSPNYG00000018706	sf3a1	100	91.720	Pundamilia_nyererei
ENSORLG00015017411	sf3a1	99	87.117	ENSPNAG00000003721	sf3a1	99	86.862	Pygocentrus_nattereri
ENSORLG00015017411	sf3a1	99	83.742	ENSRNOG00000005218	Sf3a1	99	82.071	Rattus_norvegicus
ENSORLG00015017411	sf3a1	99	83.871	ENSRBIG00000032167	SF3A1	100	82.264	Rhinopithecus_bieti
ENSORLG00015017411	sf3a1	99	83.871	ENSRROG00000044908	SF3A1	100	82.264	Rhinopithecus_roxellana
ENSORLG00015017411	sf3a1	93	84.898	ENSSBOG00000021960	SF3A1	98	84.431	Saimiri_boliviensis_boliviensis
ENSORLG00015017411	sf3a1	100	79.695	ENSSHAG00000003666	SF3A1	99	80.076	Sarcophilus_harrisii
ENSORLG00015017411	sf3a1	100	88.354	ENSSFOG00015004579	sf3a1	100	88.608	Scleropages_formosus
ENSORLG00015017411	sf3a1	100	90.153	ENSSMAG00000004275	sf3a1	100	90.409	Scophthalmus_maximus
ENSORLG00015017411	sf3a1	100	92.866	ENSSDUG00000022219	sf3a1	100	92.739	Seriola_dumerili
ENSORLG00015017411	sf3a1	100	92.866	ENSSLDG00000012642	sf3a1	100	92.739	Seriola_lalandi_dorsalis
ENSORLG00015017411	sf3a1	98	81.395	ENSSARG00000005960	SF3A1	100	80.491	Sorex_araneus
ENSORLG00015017411	sf3a1	97	84.766	ENSSPUG00000018863	SF3A1	100	82.918	Sphenodon_punctatus
ENSORLG00015017411	sf3a1	100	93.631	ENSSPAG00000011856	sf3a1	100	93.503	Stegastes_partitus
ENSORLG00015017411	sf3a1	99	83.484	ENSSSCG00000010002	SF3A1	100	82.138	Sus_scrofa
ENSORLG00015017411	sf3a1	96	84.828	ENSTGUG00000010547	SF3A1	99	83.506	Taeniopygia_guttata
ENSORLG00015017411	sf3a1	100	88.280	ENSTRUG00000006118	sf3a1	100	87.134	Takifugu_rubripes
ENSORLG00015017411	sf3a1	64	88.433	ENSTNIG00000005713	sf3a1	88	87.879	Tetraodon_nigroviridis
ENSORLG00015017411	sf3a1	99	77.419	ENSTBEG00000012771	SF3A1	100	75.975	Tupaia_belangeri
ENSORLG00015017411	sf3a1	99	83.763	ENSTTRG00000001535	SF3A1	100	82.161	Tursiops_truncatus
ENSORLG00015017411	sf3a1	99	81.622	ENSUAMG00000006750	SF3A1	99	81.115	Ursus_americanus
ENSORLG00015017411	sf3a1	100	82.516	ENSUMAG00000016665	SF3A1	100	82.166	Ursus_maritimus
ENSORLG00015017411	sf3a1	99	83.742	ENSVVUG00000003075	SF3A1	100	82.138	Vulpes_vulpes
ENSORLG00015017411	sf3a1	100	78.392	ENSXETG00000016144	sf3a1	96	83.806	Xenopus_tropicalis
ENSORLG00015017411	sf3a1	100	92.122	ENSXCOG00000015653	sf3a1	100	92.376	Xiphophorus_couchianus
ENSORLG00015017411	sf3a1	100	92.376	ENSXMAG00000002753	sf3a1	100	92.630	Xiphophorus_maculatus