EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015017480 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 10227 bases
Position: chr2:15996275-16006501
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015016501	RRM_1	PF00076.22	8.4e-31	1	2
ENSORLP00015016501	RRM_1	PF00076.22	8.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015024718	-	4308	-	ENSORLP00015016501	506 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015017480	pspc1	84	52.915	ENSORLG00015002131	sfpq	51	61.111
ENSORLG00015017480	pspc1	71	58.901	ENSORLG00015018033	nono	86	59.631

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017480	pspc1	82	68.650	ENSG00000121390	PSPC1	82	79.321	Homo_sapiens
ENSORLG00015017480	pspc1	100	78.053	ENSAPOG00000015946	pspc1	100	78.435	Acanthochromis_polyacanthus
ENSORLG00015017480	pspc1	82	69.091	ENSAMEG00000017420	PSPC1	88	70.638	Ailuropoda_melanoleuca
ENSORLG00015017480	pspc1	100	71.012	ENSACIG00000018695	pspc1	100	70.633	Amphilophus_citrinellus
ENSORLG00015017480	pspc1	100	77.757	ENSAOCG00000005279	pspc1	100	78.327	Amphiprion_ocellaris
ENSORLG00015017480	pspc1	100	78.203	ENSAPEG00000015927	pspc1	100	78.776	Amphiprion_percula
ENSORLG00015017480	pspc1	100	67.311	ENSATEG00000004878	pspc1	100	65.840	Anabas_testudineus
ENSORLG00015017480	pspc1	67	65.439	ENSAPLG00000003643	SFPQ	82	57.333	Anas_platyrhynchos
ENSORLG00015017480	pspc1	75	64.593	ENSAPLG00000006246	PSPC1	100	68.704	Anas_platyrhynchos
ENSORLG00015017480	pspc1	71	58.967	ENSACAG00000013307	-	73	50.800	Anolis_carolinensis
ENSORLG00015017480	pspc1	87	64.803	ENSACAG00000002093	PSPC1	91	67.269	Anolis_carolinensis
ENSORLG00015017480	pspc1	86	66.739	ENSANAG00000000059	PSPC1	83	76.852	Aotus_nancymaae
ENSORLG00015017480	pspc1	100	70.196	ENSACLG00000027220	pspc1	100	69.866	Astatotilapia_calliptera
ENSORLG00015017480	pspc1	100	60.926	ENSAMXG00000036881	pspc1	100	64.587	Astyanax_mexicanus
ENSORLG00015017480	pspc1	88	66.030	ENSBTAG00000003934	PSPC1	89	70.426	Bos_taurus
ENSORLG00015017480	pspc1	86	66.739	ENSCJAG00000004554	PSPC1	88	70.638	Callithrix_jacchus
ENSORLG00015017480	pspc1	77	72.087	ENSCAFG00020002009	PSPC1	83	79.321	Canis_lupus_dingo
ENSORLG00015017480	pspc1	88	66.030	ENSCHIG00000016708	PSPC1	89	70.426	Capra_hircus
ENSORLG00015017480	pspc1	75	63.250	ENSTSYG00000032882	PSPC1	88	63.433	Carlito_syrichta
ENSORLG00015017480	pspc1	82	68.650	ENSCPOG00000000395	PSPC1	83	79.321	Cavia_porcellus
ENSORLG00015017480	pspc1	86	66.739	ENSCCAG00000033498	PSPC1	88	70.638	Cebus_capucinus
ENSORLG00015017480	pspc1	82	68.421	ENSCATG00000036434	PSPC1	90	79.321	Cercocebus_atys
ENSORLG00015017480	pspc1	72	67.442	ENSCLAG00000005241	PSPC1	92	68.496	Chinchilla_lanigera
ENSORLG00015017480	pspc1	87	62.716	ENSCHOG00000008913	PSPC1	88	67.164	Choloepus_hoffmanni
ENSORLG00015017480	pspc1	88	65.289	ENSCPBG00000020859	PSPC1	90	68.842	Chrysemys_picta_bellii
ENSORLG00015017480	pspc1	58	57.627	ENSCSAVG00000003533	-	53	58.865	Ciona_savignyi
ENSORLG00015017480	pspc1	71	58.333	ENSCANG00000018948	PSPC1	87	81.679	Colobus_angolensis_palliatus
ENSORLG00015017480	pspc1	92	62.941	ENSCGRG00001018368	Pspc1	88	70.426	Cricetulus_griseus_chok1gshd
ENSORLG00015017480	pspc1	92	62.941	ENSCGRG00000011724	Pspc1	88	70.426	Cricetulus_griseus_crigri
ENSORLG00015017480	pspc1	100	70.577	ENSCVAG00000007679	-	100	73.938	Cyprinodon_variegatus
ENSORLG00015017480	pspc1	100	61.770	ENSDARG00000006621	pspc1	100	67.494	Danio_rerio
ENSORLG00015017480	pspc1	82	69.108	ENSDNOG00000011078	PSPC1	88	70.426	Dasypus_novemcinctus
ENSORLG00015017480	pspc1	87	65.319	ENSDORG00000016050	Pspc1	88	68.085	Dipodomys_ordii
ENSORLG00015017480	pspc1	52	78.218	ENSETEG00000000502	-	60	78.218	Echinops_telfairi
ENSORLG00015017480	pspc1	91	52.778	ENSEBUG00000003964	-	61	67.847	Eptatretus_burgeri
ENSORLG00015017480	pspc1	60	43.161	ENSEBUG00000010133	pspc1	72	47.273	Eptatretus_burgeri
ENSORLG00015017480	pspc1	82	69.108	ENSEASG00005000119	PSPC1	87	74.085	Equus_asinus_asinus
ENSORLG00015017480	pspc1	82	69.108	ENSECAG00000017286	PSPC1	87	74.085	Equus_caballus
ENSORLG00015017480	pspc1	51	70.000	ENSEEUG00000011288	-	51	70.000	Erinaceus_europaeus
ENSORLG00015017480	pspc1	100	65.185	ENSELUG00000003746	pspc1	100	65.511	Esox_lucius
ENSORLG00015017480	pspc1	82	69.108	ENSFCAG00000027841	PSPC1	83	79.321	Felis_catus
ENSORLG00015017480	pspc1	89	65.298	ENSFALG00000008750	PSPC1	89	68.763	Ficedula_albicollis
ENSORLG00015017480	pspc1	87	67.447	ENSFDAG00000002617	PSPC1	90	70.213	Fukomys_damarensis
ENSORLG00015017480	pspc1	100	63.027	ENSGMOG00000015074	pspc1	100	63.671	Gadus_morhua
ENSORLG00015017480	pspc1	87	65.966	ENSGALG00000017142	PSPC1	90	68.842	Gallus_gallus
ENSORLG00015017480	pspc1	76	78.626	ENSGAFG00000006327	pspc1	81	78.372	Gambusia_affinis
ENSORLG00015017480	pspc1	100	67.510	ENSGACG00000014901	pspc1	94	79.403	Gasterosteus_aculeatus
ENSORLG00015017480	pspc1	88	65.289	ENSGAGG00000019164	PSPC1	90	68.842	Gopherus_agassizii
ENSORLG00015017480	pspc1	78	59.564	ENSGAGG00000017325	-	69	56.616	Gopherus_agassizii
ENSORLG00015017480	pspc1	82	68.650	ENSGGOG00000003414	PSPC1	82	79.321	Gorilla_gorilla
ENSORLG00015017480	pspc1	100	78.378	ENSHBUG00000001139	pspc1	100	79.537	Haplochromis_burtoni
ENSORLG00015017480	pspc1	92	64.990	ENSHGLG00000018811	PSPC1	89	70.213	Heterocephalus_glaber_female
ENSORLG00015017480	pspc1	57	80.903	ENSHGLG00100007962	PSPC1	87	81.469	Heterocephalus_glaber_male
ENSORLG00015017480	pspc1	81	72.488	ENSHCOG00000013251	pspc1	99	70.444	Hippocampus_comes
ENSORLG00015017480	pspc1	100	65.789	ENSIPUG00000013192	pspc1	100	66.917	Ictalurus_punctatus
ENSORLG00015017480	pspc1	80	70.465	ENSSTOG00000026833	PSPC1	82	79.321	Ictidomys_tridecemlineatus
ENSORLG00015017480	pspc1	82	68.421	ENSJJAG00000018334	Pspc1	88	70.213	Jaculus_jaculus
ENSORLG00015017480	pspc1	100	66.339	ENSKMAG00000013525	-	98	75.410	Kryptolebias_marmoratus
ENSORLG00015017480	pspc1	99	68.529	ENSLBEG00000004474	pspc1	100	71.402	Labrus_bergylta
ENSORLG00015017480	pspc1	100	62.362	ENSLACG00000010762	PSPC1	100	63.197	Latimeria_chalumnae
ENSORLG00015017480	pspc1	100	65.038	ENSLOCG00000010832	pspc1	99	66.792	Lepisosteus_oculatus
ENSORLG00015017480	pspc1	87	64.803	ENSLAFG00000010968	PSPC1	88	70.172	Loxodonta_africana
ENSORLG00015017480	pspc1	82	68.421	ENSMFAG00000032728	PSPC1	91	79.385	Macaca_fascicularis
ENSORLG00015017480	pspc1	82	68.421	ENSMMUG00000020262	PSPC1	88	79.321	Macaca_mulatta
ENSORLG00015017480	pspc1	82	68.421	ENSMNEG00000027401	PSPC1	85	74.442	Macaca_nemestrina
ENSORLG00015017480	pspc1	70	68.267	ENSMLEG00000039043	PSPC1	94	70.588	Mandrillus_leucophaeus
ENSORLG00015017480	pspc1	100	75.330	ENSMAMG00000004333	pspc1	100	74.812	Mastacembelus_armatus
ENSORLG00015017480	pspc1	100	70.196	ENSMZEG00005005726	pspc1	100	69.866	Maylandia_zebra
ENSORLG00015017480	pspc1	76	64.524	ENSMGAG00000015134	PSPC1	100	68.613	Meleagris_gallopavo
ENSORLG00015017480	pspc1	81	66.279	ENSMAUG00000021067	Pspc1	86	67.168	Mesocricetus_auratus
ENSORLG00015017480	pspc1	90	66.393	ENSMICG00000013970	PSPC1	83	79.321	Microcebus_murinus
ENSORLG00015017480	pspc1	77	71.359	ENSMOCG00000006060	Pspc1	88	70.000	Microtus_ochrogaster
ENSORLG00015017480	pspc1	81	75.000	ENSMMOG00000004352	pspc1	65	75.000	Mola_mola
ENSORLG00015017480	pspc1	77	72.087	ENSMODG00000008029	PSPC1	66	74.634	Monodelphis_domestica
ENSORLG00015017480	pspc1	100	76.218	ENSMALG00000008914	pspc1	100	77.388	Monopterus_albus
ENSORLG00015017480	pspc1	77	71.776	MGP_CAROLIEiJ_G0019341	Pspc1	86	74.010	Mus_caroli
ENSORLG00015017480	pspc1	77	71.776	ENSMUSG00000021938	Pspc1	86	74.010	Mus_musculus
ENSORLG00015017480	pspc1	77	71.776	MGP_PahariEiJ_G0030359	Pspc1	86	74.010	Mus_pahari
ENSORLG00015017480	pspc1	77	71.776	MGP_SPRETEiJ_G0020232	Pspc1	86	74.010	Mus_spretus
ENSORLG00015017480	pspc1	77	72.087	ENSMPUG00000013347	PSPC1	88	70.638	Mustela_putorius_furo
ENSORLG00015017480	pspc1	87	65.625	ENSMLUG00000017663	PSPC1	89	70.402	Myotis_lucifugus
ENSORLG00015017480	pspc1	87	66.038	ENSNGAG00000011271	Pspc1	88	69.723	Nannospalax_galili
ENSORLG00015017480	pspc1	76	75.260	ENSNBRG00000014059	pspc1	92	71.970	Neolamprologus_brichardi
ENSORLG00015017480	pspc1	82	68.650	ENSNLEG00000001294	PSPC1	88	70.638	Nomascus_leucogenys
ENSORLG00015017480	pspc1	87	56.604	ENSODEG00000007817	-	88	58.974	Octodon_degus
ENSORLG00015017480	pspc1	87	64.719	ENSODEG00000019012	-	88	65.659	Octodon_degus
ENSORLG00015017480	pspc1	100	78.998	ENSONIG00000012010	pspc1	99	80.154	Oreochromis_niloticus
ENSORLG00015017480	pspc1	81	59.762	ENSOANG00000011381	-	92	56.399	Ornithorhynchus_anatinus
ENSORLG00015017480	pspc1	75	65.060	ENSOANG00000009017	-	100	70.343	Ornithorhynchus_anatinus
ENSORLG00015017480	pspc1	87	64.389	ENSOCUG00000006153	PSPC1	88	70.426	Oryctolagus_cuniculus
ENSORLG00015017480	pspc1	100	97.628	ENSORLG00000004232	-	100	97.628	Oryzias_latipes
ENSORLG00015017480	pspc1	100	97.233	ENSORLG00020000578	PSPC1	100	97.233	Oryzias_latipes_hni
ENSORLG00015017480	pspc1	86	67.391	ENSOGAG00000012643	PSPC1	88	70.638	Otolemur_garnettii
ENSORLG00015017480	pspc1	81	68.736	ENSOARG00000014163	PSPC1	95	70.085	Ovis_aries
ENSORLG00015017480	pspc1	82	63.551	ENSPPAG00000009836	PSPC1	92	79.321	Pan_paniscus
ENSORLG00015017480	pspc1	82	69.108	ENSPPRG00000008833	PSPC1	88	70.638	Panthera_pardus
ENSORLG00015017480	pspc1	70	68.800	ENSPTIG00000016917	PSPC1	84	70.588	Panthera_tigris_altaica
ENSORLG00015017480	pspc1	82	68.493	ENSPTRG00000005677	PSPC1	82	79.321	Pan_troglodytes
ENSORLG00015017480	pspc1	82	68.421	ENSPANG00000001992	PSPC1	89	79.385	Papio_anubis
ENSORLG00015017480	pspc1	100	60.901	ENSPKIG00000003578	pspc1	100	65.177	Paramormyrops_kingsleyae
ENSORLG00015017480	pspc1	90	63.022	ENSPSIG00000005168	PSPC1	90	68.067	Pelodiscus_sinensis
ENSORLG00015017480	pspc1	70	69.806	ENSPMGG00000015135	pspc1	98	68.732	Periophthalmus_magnuspinnatus
ENSORLG00015017480	pspc1	77	71.602	ENSPEMG00000015214	Pspc1	88	70.213	Peromyscus_maniculatus_bairdii
ENSORLG00015017480	pspc1	57	43.197	ENSPMAG00000004618	pspc1	79	45.385	Petromyzon_marinus
ENSORLG00015017480	pspc1	85	67.550	ENSPCIG00000017680	PSPC1	88	70.638	Phascolarctos_cinereus
ENSORLG00015017480	pspc1	99	78.558	ENSPFOG00000003362	pspc1	100	78.363	Poecilia_formosa
ENSORLG00015017480	pspc1	84	51.818	ENSPLAG00000004407	-	54	55.473	Poecilia_latipinna
ENSORLG00015017480	pspc1	100	78.571	ENSPLAG00000011540	pspc1	100	78.378	Poecilia_latipinna
ENSORLG00015017480	pspc1	100	78.185	ENSPMEG00000008322	pspc1	100	77.992	Poecilia_mexicana
ENSORLG00015017480	pspc1	84	52.055	ENSPMEG00000001025	-	53	55.970	Poecilia_mexicana
ENSORLG00015017480	pspc1	100	77.799	ENSPREG00000007786	pspc1	100	77.606	Poecilia_reticulata
ENSORLG00015017480	pspc1	82	68.192	ENSPPYG00000005186	PSPC1	85	74.690	Pongo_abelii
ENSORLG00015017480	pspc1	91	63.636	ENSPCOG00000014364	PSPC1	88	67.447	Propithecus_coquereli
ENSORLG00015017480	pspc1	87	65.618	ENSPVAG00000005036	PSPC1	89	69.296	Pteropus_vampyrus
ENSORLG00015017480	pspc1	100	70.392	ENSPNYG00000008893	pspc1	100	70.058	Pundamilia_nyererei
ENSORLG00015017480	pspc1	100	65.028	ENSPNAG00000016511	pspc1	100	66.541	Pygocentrus_nattereri
ENSORLG00015017480	pspc1	90	65.574	ENSRNOG00000020782	Pspc1	86	74.194	Rattus_norvegicus
ENSORLG00015017480	pspc1	87	66.022	ENSRBIG00000036057	PSPC1	91	79.321	Rhinopithecus_bieti
ENSORLG00015017480	pspc1	87	66.022	ENSRROG00000036334	PSPC1	82	79.321	Rhinopithecus_roxellana
ENSORLG00015017480	pspc1	72	61.316	ENSSBOG00000028172	PSPC1	88	80.224	Saimiri_boliviensis_boliviensis
ENSORLG00015017480	pspc1	85	62.092	ENSSHAG00000004696	PSPC1	88	65.678	Sarcophilus_harrisii
ENSORLG00015017480	pspc1	87	67.556	ENSSFOG00015001395	pspc1	99	73.348	Scleropages_formosus
ENSORLG00015017480	pspc1	100	76.038	ENSSMAG00000001761	pspc1	100	74.858	Scophthalmus_maximus
ENSORLG00015017480	pspc1	100	74.444	ENSSDUG00000010651	pspc1	100	76.155	Seriola_dumerili
ENSORLG00015017480	pspc1	100	69.763	ENSSLDG00000004284	pspc1	100	69.691	Seriola_lalandi_dorsalis
ENSORLG00015017480	pspc1	82	62.929	ENSSARG00000000888	PSPC1	89	65.032	Sorex_araneus
ENSORLG00015017480	pspc1	86	51.007	ENSSPUG00000001136	-	64	50.446	Sphenodon_punctatus
ENSORLG00015017480	pspc1	91	58.607	ENSSPUG00000008550	PSPC1	88	59.615	Sphenodon_punctatus
ENSORLG00015017480	pspc1	100	78.195	ENSSPAG00000001921	pspc1	100	78.571	Stegastes_partitus
ENSORLG00015017480	pspc1	82	68.879	ENSSSCG00000009569	PSPC1	84	79.012	Sus_scrofa
ENSORLG00015017480	pspc1	87	65.966	ENSTGUG00000011295	PSPC1	99	69.593	Taeniopygia_guttata
ENSORLG00015017480	pspc1	100	68.015	ENSTRUG00000011335	pspc1	100	69.112	Takifugu_rubripes
ENSORLG00015017480	pspc1	100	68.544	ENSTNIG00000010358	pspc1	100	71.150	Tetraodon_nigroviridis
ENSORLG00015017480	pspc1	92	56.557	ENSTBEG00000002361	PSPC1	88	61.050	Tupaia_belangeri
ENSORLG00015017480	pspc1	86	67.396	ENSTTRG00000003343	PSPC1	89	70.426	Tursiops_truncatus
ENSORLG00015017480	pspc1	63	76.025	ENSUAMG00000012309	PSPC1	82	81.469	Ursus_americanus
ENSORLG00015017480	pspc1	82	68.864	ENSUMAG00000013993	PSPC1	91	79.012	Ursus_maritimus
ENSORLG00015017480	pspc1	70	68.533	ENSVPAG00000010029	PSPC1	100	70.588	Vicugna_pacos
ENSORLG00015017480	pspc1	77	72.087	ENSVVUG00000006414	PSPC1	84	79.321	Vulpes_vulpes
ENSORLG00015017480	pspc1	76	74.809	ENSXCOG00000017438	pspc1	93	78.880	Xiphophorus_couchianus
ENSORLG00015017480	pspc1	76	79.644	ENSXMAG00000007929	pspc1	93	79.389	Xiphophorus_maculatus