EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSORLG00015017754 (Gene tree)
Gene ID
-
Gene Symbol
lig4
Alias
-
Full Name
ligase IV%2C DNA%2C ATP-dependent
Gene Type
protein_coding
Species
Oryzias_latipes_hsok
Status
putative
Strand
Plus strand
Length
24568 bases
Position
chr2:15656635-15681202
Accession
ZDB-GENE-070820-10
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00015016751RNA_ligasePF09414.105.9e-0911
ENSORLP00015016754RNA_ligasePF09414.105.9e-0911
ENSORLP00015032745RNA_ligasePF09414.105.9e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00015025091-3990-ENSORLP00015016751912 (aa)--
ENSORLT00015034431-3767-ENSORLP00015016754912 (aa)--
ENSORLT00015025015-3938-ENSORLP00015032745912 (aa)--
Gene Model
Click here to download ENSORLG00015017754's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017754's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00015017754lig49964.945ENSG00000174405LIG410065.603Homo_sapiens
ENSORLG00015017754lig49986.044ENSAPOG00000000866lig49986.044Acanthochromis_polyacanthus
ENSORLG00015017754lig49963.239ENSAMEG00000019685LIG49963.239Ailuropoda_melanoleuca
ENSORLG00015017754lig49985.181ENSACIG00000018309lig49985.181Amphilophus_citrinellus
ENSORLG00015017754lig49985.824ENSAOCG00000011768lig49985.824Amphiprion_ocellaris
ENSORLG00015017754lig49986.044ENSAPEG00000017815lig49986.044Amphiprion_percula
ENSORLG00015017754lig49984.708ENSATEG00000005583lig49984.488Anabas_testudineus
ENSORLG00015017754lig49667.122ENSAPLG00000001673LIG49966.894Anas_platyrhynchos
ENSORLG00015017754lig49966.520ENSACAG00000014566LIG49966.520Anolis_carolinensis
ENSORLG00015017754lig49964.396ENSANAG00000012446LIG49964.176Aotus_nancymaae
ENSORLG00015017754lig49985.291ENSACLG00000027051lig49985.291Astatotilapia_calliptera
ENSORLG00015017754lig49977.582ENSAMXG00000008192lig49477.582Astyanax_mexicanus
ENSORLG00015017754lig49964.945ENSBTAG00000015868LIG49964.945Bos_taurus
ENSORLG00015017754lig49963.956ENSCJAG00000014689LIG49963.736Callithrix_jacchus
ENSORLG00015017754lig49963.877ENSCAFG00000006031LIG49964.207Canis_familiaris
ENSORLG00015017754lig49963.877ENSCAFG00020021230LIG49964.207Canis_lupus_dingo
ENSORLG00015017754lig49964.725ENSCHIG00000001019LIG49964.725Capra_hircus
ENSORLG00015017754lig49864.309ENSCAPG00000006284LIG49964.199Cavia_aperea
ENSORLG00015017754lig49963.956ENSCPOG00000014266LIG49963.846Cavia_porcellus
ENSORLG00015017754lig49963.956ENSCCAG00000019971LIG49963.846Cebus_capucinus
ENSORLG00015017754lig49964.459ENSCATG00000021075LIG49964.459Cercocebus_atys
ENSORLG00015017754lig49964.803ENSCLAG00000003376LIG49964.693Chinchilla_lanigera
ENSORLG00015017754lig49964.176ENSCSAG00000000211LIG49964.176Chlorocebus_sabaeus
ENSORLG00015017754lig49968.102ENSCPBG00000023291LIG410067.538Chrysemys_picta_bellii
ENSORLG00015017754lig46948.438ENSCING00000009536-9448.950Ciona_intestinalis
ENSORLG00015017754lig48345.740ENSCSAVG00000010336-9845.216Ciona_savignyi
ENSORLG00015017754lig49964.176ENSCANG00000005805LIG49964.176Colobus_angolensis_palliatus
ENSORLG00015017754lig49963.417ENSCGRG00001012072Lig49963.308Cricetulus_griseus_chok1gshd
ENSORLG00015017754lig49963.417ENSCGRG00000013417Lig49963.308Cricetulus_griseus_crigri
ENSORLG00015017754lig49782.340ENSCSEG00000013905lig49682.227Cynoglossus_semilaevis
ENSORLG00015017754lig49984.835ENSCVAG00000007896lig49984.835Cyprinodon_variegatus
ENSORLG00015017754lig49977.058ENSDARG00000060620lig49976.839Danio_rerio
ENSORLG00015017754lig49963.447ENSDNOG00000000513LIG49963.557Dasypus_novemcinctus
ENSORLG00015017754lig49964.790ENSDORG00000027303Lig49964.790Dipodomys_ordii
ENSORLG00015017754lig49231.116FBgn0030506Lig49330.891Drosophila_melanogaster
ENSORLG00015017754lig49862.791ENSETEG00000015563LIG410062.791Echinops_telfairi
ENSORLG00015017754lig49944.491ENSEBUG00000014243lig49944.491Eptatretus_burgeri
ENSORLG00015017754lig49963.516ENSEASG00005022073LIG49963.516Equus_asinus_asinus
ENSORLG00015017754lig49963.516ENSECAG00000003257LIG49963.516Equus_caballus
ENSORLG00015017754lig49979.911ENSELUG00000006787lig49979.911Esox_lucius
ENSORLG00015017754lig49963.767ENSFCAG00000031985LIG49963.767Felis_catus
ENSORLG00015017754lig48868.688ENSFALG00000004214LIG49868.441Ficedula_albicollis
ENSORLG00015017754lig49963.846ENSFDAG00000008973LIG49963.626Fukomys_damarensis
ENSORLG00015017754lig49984.337ENSFHEG00000007398lig49084.337Fundulus_heteroclitus
ENSORLG00015017754lig48677.238ENSGMOG00000012843lig49977.238Gadus_morhua
ENSORLG00015017754lig410065.502ENSGALG00000016854LIG410065.502Gallus_gallus
ENSORLG00015017754lig49883.871ENSGAFG00000019779lig49683.206Gambusia_affinis
ENSORLG00015017754lig49982.068ENSGACG00000014135lig49982.068Gasterosteus_aculeatus
ENSORLG00015017754lig49964.725ENSGGOG00000027771LIG49964.725Gorilla_gorilla
ENSORLG00015017754lig49985.291ENSHBUG00000006245lig49985.291Haplochromis_burtoni
ENSORLG00015017754lig49964.066ENSHGLG00000000718LIG49963.846Heterocephalus_glaber_female
ENSORLG00015017754lig49964.066ENSHGLG00100003265LIG49963.846Heterocephalus_glaber_male
ENSORLG00015017754lig49979.737ENSHCOG00000012010lig49979.737Hippocampus_comes
ENSORLG00015017754lig410076.013ENSIPUG00000013748lig410076.013Ictalurus_punctatus
ENSORLG00015017754lig49965.022ENSSTOG00000024303LIG49965.022Ictidomys_tridecemlineatus
ENSORLG00015017754lig49963.816ENSJJAG00000006750Lig49963.925Jaculus_jaculus
ENSORLG00015017754lig49981.778ENSKMAG00000001149lig49981.778Kryptolebias_marmoratus
ENSORLG00015017754lig49184.699ENSLBEG00000014578lig410084.699Labrus_bergylta
ENSORLG00015017754lig49967.470ENSLACG00000003282LIG49967.470Latimeria_chalumnae
ENSORLG00015017754lig49971.272ENSLOCG00000008901lig49870.943Lepisosteus_oculatus
ENSORLG00015017754lig49963.377ENSLAFG00000031152LIG49963.377Loxodonta_africana
ENSORLG00015017754lig49964.176ENSMFAG00000037235LIG49964.176Macaca_fascicularis
ENSORLG00015017754lig49964.066ENSMMUG00000008874LIG49964.066Macaca_mulatta
ENSORLG00015017754lig49964.176ENSMNEG00000023575LIG49964.176Macaca_nemestrina
ENSORLG00015017754lig49964.066ENSMLEG00000026720LIG49964.066Mandrillus_leucophaeus
ENSORLG00015017754lig49984.649ENSMAMG00000008472lig49984.649Mastacembelus_armatus
ENSORLG00015017754lig49985.181ENSMZEG00005001855lig49985.181Maylandia_zebra
ENSORLG00015017754lig410065.393ENSMGAG00000015532LIG410065.393Meleagris_gallopavo
ENSORLG00015017754lig49963.596ENSMOCG00000019000Lig49963.268Microtus_ochrogaster
ENSORLG00015017754lig49984.430ENSMMOG00000004390lig49984.430Mola_mola
ENSORLG00015017754lig49965.121ENSMODG00000025064LIG49965.121Monodelphis_domestica
ENSORLG00015017754lig49983.114ENSMALG00000008555lig49982.785Monopterus_albus
ENSORLG00015017754lig49964.035MGP_CAROLIEiJ_G0030809Lig49963.925Mus_caroli
ENSORLG00015017754lig49963.706ENSMUSG00000049717Lig49963.487Mus_musculus
ENSORLG00015017754lig49963.377MGP_PahariEiJ_G0021270Lig49963.268Mus_pahari
ENSORLG00015017754lig49964.035MGP_SPRETEiJ_G0031917Lig49963.925Mus_spretus
ENSORLG00015017754lig49964.145ENSMPUG00000018675LIG49964.145Mustela_putorius_furo
ENSORLG00015017754lig49964.066ENSMLUG00000001267LIG49963.846Myotis_lucifugus
ENSORLG00015017754lig49964.145ENSNGAG00000013258Lig49964.035Nannospalax_galili
ENSORLG00015017754lig49985.071ENSNBRG00000021252lig49985.071Neolamprologus_brichardi
ENSORLG00015017754lig49964.066ENSNLEG00000007888LIG49964.066Nomascus_leucogenys
ENSORLG00015017754lig49963.326ENSOPRG00000005765LIG49963.326Ochotona_princeps
ENSORLG00015017754lig49964.097ENSODEG00000019683LIG49963.877Octodon_degus
ENSORLG00015017754lig49985.401ENSONIG00000011969lig49885.181Oreochromis_niloticus
ENSORLG00015017754lig49964.035ENSOCUG00000015734LIG49964.035Oryctolagus_cuniculus
ENSORLG00015017754lig410099.342ENSORLG00000004041lig410099.342Oryzias_latipes
ENSORLG00015017754lig410099.013ENSORLG00020019607lig410099.013Oryzias_latipes_hni
ENSORLG00015017754lig47693.198ENSOMEG00000003459lig49993.198Oryzias_melastigma
ENSORLG00015017754lig49963.865ENSOGAG00000032120LIG49963.865Otolemur_garnettii
ENSORLG00015017754lig48368.344ENSOARG00000005590LIG49968.344Ovis_aries
ENSORLG00015017754lig49964.505ENSPPAG00000032998LIG49964.505Pan_paniscus
ENSORLG00015017754lig49964.207ENSPPRG00000017804LIG49964.207Panthera_pardus
ENSORLG00015017754lig49964.097ENSPTIG00000010051LIG49964.097Panthera_tigris_altaica
ENSORLG00015017754lig49964.615ENSPTRG00000006025LIG49964.615Pan_troglodytes
ENSORLG00015017754lig49964.570ENSPANG00000007562LIG49964.570Papio_anubis
ENSORLG00015017754lig410075.575ENSPKIG00000011645lig49975.356Paramormyrops_kingsleyae
ENSORLG00015017754lig49967.141ENSPSIG00000001504LIG49967.141Pelodiscus_sinensis
ENSORLG00015017754lig49879.665ENSPMGG00000013486lig49978.705Periophthalmus_magnuspinnatus
ENSORLG00015017754lig49962.760ENSPEMG00000000076Lig49962.651Peromyscus_maniculatus_bairdii
ENSORLG00015017754lig49964.364ENSPCIG00000021882LIG49964.364Phascolarctos_cinereus
ENSORLG00015017754lig49884.744ENSPFOG00000000797lig410083.825Poecilia_formosa
ENSORLG00015017754lig49884.633ENSPLAG00000001196lig410083.716Poecilia_latipinna
ENSORLG00015017754lig49884.633ENSPMEG00000021353lig410083.716Poecilia_mexicana
ENSORLG00015017754lig49884.187ENSPREG00000007323lig410083.497Poecilia_reticulata
ENSORLG00015017754lig49963.846ENSPPYG00000005540LIG49963.846Pongo_abelii
ENSORLG00015017754lig49963.516ENSPVAG00000016403LIG49963.516Pteropus_vampyrus
ENSORLG00015017754lig49985.291ENSPNYG00000009660lig49985.291Pundamilia_nyererei
ENSORLG00015017754lig49979.231ENSPNAG00000028056lig49979.231Pygocentrus_nattereri
ENSORLG00015017754lig49979.231ENSPNAG00000028069LIG49979.231Pygocentrus_nattereri
ENSORLG00015017754lig49963.377ENSRNOG00000014605Lig49963.268Rattus_norvegicus
ENSORLG00015017754lig49963.516ENSRBIG00000039962LIG49963.516Rhinopithecus_bieti
ENSORLG00015017754lig49964.286ENSRROG00000006040LIG49964.286Rhinopithecus_roxellana
ENSORLG00015017754lig49964.176ENSSBOG00000019029LIG49963.956Saimiri_boliviensis_boliviensis
ENSORLG00015017754lig49962.061ENSSHAG00000009525LIG49962.061Sarcophilus_harrisii
ENSORLG00015017754lig49976.400ENSSFOG00015012835lig49976.180Scleropages_formosus
ENSORLG00015017754lig49979.780ENSSMAG00000011267lig49979.451Scophthalmus_maximus
ENSORLG00015017754lig49983.515ENSSDUG00000010343lig49983.406Seriola_dumerili
ENSORLG00015017754lig49982.533ENSSLDG00000003239lig49982.205Seriola_lalandi_dorsalis
ENSORLG00015017754lig49864.609ENSSARG00000006573LIG49964.609Sorex_araneus
ENSORLG00015017754lig49267.616ENSSPUG00000002444LIG410067.616Sphenodon_punctatus
ENSORLG00015017754lig49984.978ENSSPAG00000001609lig49984.978Stegastes_partitus
ENSORLG00015017754lig49963.956ENSSSCG00000009540LIG49964.254Sus_scrofa
ENSORLG00015017754lig49966.372ENSTGUG00000010795LIG49966.261Taeniopygia_guttata
ENSORLG00015017754lig49982.675ENSTRUG00000009984lig49982.675Takifugu_rubripes
ENSORLG00015017754lig49981.648ENSTNIG00000010348lig49981.648Tetraodon_nigroviridis
ENSORLG00015017754lig49964.066ENSTBEG00000017741LIG49964.066Tupaia_belangeri
ENSORLG00015017754lig49963.626ENSTTRG00000012660LIG49963.626Tursiops_truncatus
ENSORLG00015017754lig49863.315ENSUAMG00000003773LIG49963.315Ursus_americanus
ENSORLG00015017754lig49966.156ENSXETG00000002654lig49966.156Xenopus_tropicalis
ENSORLG00015017754lig49884.392ENSXCOG00000017401lig410083.497Xiphophorus_couchianus
ENSORLG00015017754lig49884.950ENSXMAG00000015142lig49984.044Xiphophorus_maculatus

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