EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015017880 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: -
Full Name: SR-related CTD-associated factor 4a
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 34724 bases
Position: chr14:10993249-11027972
Accession: ZDB-GENE-030131-9003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015032806	RRM_1	PF00076.22	1.3e-07	1	1
ENSORLP00015032833	RRM_1	PF00076.22	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015025140	-	5737	-	ENSORLP00015032806	1146 (aa)	-	-
ENSORLT00015025194	-	6090	-	ENSORLP00015032833	1315 (aa)	-	-

Gene Model

Click here to download ENSORLG00015017880's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015017880's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015017880	scaf4a	86	74.400	ENSAPOG00000002946	scaf4a	100	72.851	Acanthochromis_polyacanthus
ENSORLG00015017880	scaf4a	100	72.704	ENSAOCG00000000615	scaf4a	100	73.214	Amphiprion_ocellaris
ENSORLG00015017880	scaf4a	100	72.743	ENSAPEG00000021229	scaf4a	100	73.254	Amphiprion_percula
ENSORLG00015017880	scaf4a	57	58.766	ENSAPLG00000002509	SCAF4	70	54.362	Anas_platyrhynchos
ENSORLG00015017880	scaf4a	52	58.499	ENSCAFG00020026019	SCAF4	70	63.415	Canis_lupus_dingo
ENSORLG00015017880	scaf4a	100	64.508	ENSCSEG00000019549	scaf4a	99	63.667	Cynoglossus_semilaevis
ENSORLG00015017880	scaf4a	86	52.750	ENSDARG00000077093	scaf4a	94	51.053	Danio_rerio
ENSORLG00015017880	scaf4a	78	82.432	ENSELUG00000009909	scaf4a	73	82.883	Esox_lucius
ENSORLG00015017880	scaf4a	66	74.808	ENSFHEG00000017866	scaf4a	92	76.326	Fundulus_heteroclitus
ENSORLG00015017880	scaf4a	57	58.964	ENSGALG00000033965	SCAF4	89	47.559	Gallus_gallus
ENSORLG00015017880	scaf4a	66	77.982	ENSGAFG00000019460	scaf4a	94	75.529	Gambusia_affinis
ENSORLG00015017880	scaf4a	81	60.597	ENSGACG00000020580	scaf4a	86	64.980	Gasterosteus_aculeatus
ENSORLG00015017880	scaf4a	100	71.041	ENSHBUG00000007920	scaf4a	100	69.890	Haplochromis_burtoni
ENSORLG00015017880	scaf4a	56	83.673	ENSHCOG00000006849	scaf4a	77	88.235	Hippocampus_comes
ENSORLG00015017880	scaf4a	61	69.767	ENSIPUG00000011285	scaf4	100	73.077	Ictalurus_punctatus
ENSORLG00015017880	scaf4a	98	66.435	ENSLBEG00000014675	scaf4a	100	68.087	Labrus_bergylta
ENSORLG00015017880	scaf4a	73	53.846	ENSLACG00000013913	SCAF4	81	53.125	Latimeria_chalumnae
ENSORLG00015017880	scaf4a	92	45.359	ENSLOCG00000009162	scaf4a	65	61.142	Lepisosteus_oculatus
ENSORLG00015017880	scaf4a	54	60.890	ENSLAFG00000010710	SCAF4	76	63.880	Loxodonta_africana
ENSORLG00015017880	scaf4a	52	61.346	ENSMNEG00000032966	SCAF4	52	41.287	Macaca_nemestrina
ENSORLG00015017880	scaf4a	74	68.468	ENSMAMG00000013223	scaf4a	100	68.743	Mastacembelus_armatus
ENSORLG00015017880	scaf4a	99	70.222	ENSMZEG00005024349	scaf4a	99	70.399	Maylandia_zebra
ENSORLG00015017880	scaf4a	51	45.441	ENSONIG00000005610	scaf4b	67	73.913	Oreochromis_niloticus
ENSORLG00015017880	scaf4a	100	71.550	ENSONIG00000004687	scaf4a	100	70.025	Oreochromis_niloticus
ENSORLG00015017880	scaf4a	100	97.666	ENSORLG00000004384	scaf4a	100	97.666	Oryzias_latipes
ENSORLG00015017880	scaf4a	100	97.364	ENSORLG00020011857	scaf4a	100	97.364	Oryzias_latipes_hni
ENSORLG00015017880	scaf4a	99	88.851	ENSOMEG00000014482	scaf4a	99	88.937	Oryzias_melastigma
ENSORLG00015017880	scaf4a	59	63.008	ENSPKIG00000022408	scaf4a	99	62.364	Paramormyrops_kingsleyae
ENSORLG00015017880	scaf4a	81	46.786	ENSPMGG00000016741	scaf4a	60	59.178	Periophthalmus_magnuspinnatus
ENSORLG00015017880	scaf4a	86	78.069	ENSPFOG00000017156	scaf4a	100	65.838	Poecilia_formosa
ENSORLG00015017880	scaf4a	67	78.406	ENSPLAG00000001972	scaf4a	94	78.906	Poecilia_latipinna
ENSORLG00015017880	scaf4a	79	56.357	ENSPNAG00000016892	scaf4a	99	50.987	Pygocentrus_nattereri
ENSORLG00015017880	scaf4a	65	75.564	ENSSMAG00000017901	scaf4a	99	67.280	Scophthalmus_maximus
ENSORLG00015017880	scaf4a	100	73.158	ENSSDUG00000012918	scaf4a	100	73.074	Seriola_dumerili
ENSORLG00015017880	scaf4a	100	73.243	ENSSLDG00000021671	scaf4a	100	71.235	Seriola_lalandi_dorsalis
ENSORLG00015017880	scaf4a	52	59.528	ENSUMAG00000016962	SCAF4	53	42.647	Ursus_maritimus
ENSORLG00015017880	scaf4a	76	64.479	ENSXETG00000007351	scaf4	53	63.291	Xenopus_tropicalis