EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015018569 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 30988 bases
Position: chr19:20962987-20993974
Accession: 101160767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015033267	DND1_DSRM	PF14709.7	7.5e-25	1	1
ENSORLP00015033267	RRM_1	PF00076.22	1.6e-39	1	3
ENSORLP00015033267	RRM_1	PF00076.22	1.6e-39	2	3
ENSORLP00015033267	RRM_1	PF00076.22	1.6e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015026010	-	3700	XM_004080747	ENSORLP00015033267	611 (aa)	XP_004080795	-

Gene Model

Click here to download ENSORLG00015018569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015018569's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015018569	a1cf	88	52.015	ENSORLG00015000066	rbm47	79	51.648
ENSORLG00015018569	a1cf	65	63.176	ENSORLG00015020234	rbm46	93	61.076

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015018569	a1cf	100	75.570	ENSG00000148584	A1CF	100	87.624	Homo_sapiens
ENSORLG00015018569	a1cf	100	82.692	ENSAPOG00000008259	a1cf	100	83.840	Acanthochromis_polyacanthus
ENSORLG00015018569	a1cf	100	74.510	ENSAMEG00000000523	A1CF	100	75.614	Ailuropoda_melanoleuca
ENSORLG00015018569	a1cf	100	84.416	ENSACIG00000008632	a1cf	100	85.390	Amphilophus_citrinellus
ENSORLG00015018569	a1cf	100	84.288	ENSAOCG00000023744	a1cf	100	85.761	Amphiprion_ocellaris
ENSORLG00015018569	a1cf	100	85.434	ENSAPEG00000009537	a1cf	100	86.907	Amphiprion_percula
ENSORLG00015018569	a1cf	100	86.341	ENSATEG00000013720	a1cf	100	86.179	Anabas_testudineus
ENSORLG00015018569	a1cf	100	76.759	ENSAPLG00000002964	A1CF	100	76.268	Anas_platyrhynchos
ENSORLG00015018569	a1cf	100	74.468	ENSACAG00000015269	A1CF	100	73.977	Anolis_carolinensis
ENSORLG00015018569	a1cf	100	75.204	ENSANAG00000019974	A1CF	100	74.673	Aotus_nancymaae
ENSORLG00015018569	a1cf	100	82.708	ENSACLG00000017428	a1cf	100	83.850	Astatotilapia_calliptera
ENSORLG00015018569	a1cf	100	74.757	ENSAMXG00000018180	a1cf	100	74.110	Astyanax_mexicanus
ENSORLG00015018569	a1cf	100	75.041	ENSBTAG00000021195	A1CF	100	76.335	Bos_taurus
ENSORLG00015018569	a1cf	100	76.183	ENSCJAG00000005045	A1CF	100	75.654	Callithrix_jacchus
ENSORLG00015018569	a1cf	100	75.163	ENSCAFG00000015581	A1CF	100	74.959	Canis_familiaris
ENSORLG00015018569	a1cf	100	75.163	ENSCAFG00020026421	A1CF	98	82.609	Canis_lupus_dingo
ENSORLG00015018569	a1cf	100	76.672	ENSCHIG00000020411	A1CF	100	76.183	Capra_hircus
ENSORLG00015018569	a1cf	94	75.390	ENSTSYG00000001755	A1CF	100	74.350	Carlito_syrichta
ENSORLG00015018569	a1cf	100	72.303	ENSCAPG00000017386	A1CF	100	72.012	Cavia_aperea
ENSORLG00015018569	a1cf	100	75.490	ENSCPOG00000009807	A1CF	100	75.000	Cavia_porcellus
ENSORLG00015018569	a1cf	100	75.980	ENSCCAG00000018168	A1CF	100	75.614	Cebus_capucinus
ENSORLG00015018569	a1cf	100	74.510	ENSCATG00000043715	A1CF	100	74.141	Cercocebus_atys
ENSORLG00015018569	a1cf	100	75.204	ENSCLAG00000010424	A1CF	100	75.204	Chinchilla_lanigera
ENSORLG00015018569	a1cf	100	75.614	ENSCSAG00000007032	A1CF	100	75.614	Chlorocebus_sabaeus
ENSORLG00015018569	a1cf	98	72.158	ENSCHOG00000009089	A1CF	98	71.993	Choloepus_hoffmanni
ENSORLG00015018569	a1cf	100	77.087	ENSCPBG00000026464	A1CF	100	76.268	Chrysemys_picta_bellii
ENSORLG00015018569	a1cf	100	75.817	ENSCANG00000038032	A1CF	100	75.450	Colobus_angolensis_palliatus
ENSORLG00015018569	a1cf	100	74.062	ENSCGRG00001017413	A1cf	100	74.062	Cricetulus_griseus_chok1gshd
ENSORLG00015018569	a1cf	100	74.020	ENSCGRG00000017332	A1cf	100	73.573	Cricetulus_griseus_crigri
ENSORLG00015018569	a1cf	100	82.410	ENSCSEG00000002361	a1cf	100	82.876	Cynoglossus_semilaevis
ENSORLG00015018569	a1cf	100	87.154	ENSCVAG00000010520	a1cf	100	86.829	Cyprinodon_variegatus
ENSORLG00015018569	a1cf	100	78.887	ENSDARG00000002968	a1cf	100	78.887	Danio_rerio
ENSORLG00015018569	a1cf	100	75.570	ENSDNOG00000002829	A1CF	100	75.367	Dasypus_novemcinctus
ENSORLG00015018569	a1cf	80	85.185	ENSETEG00000012527	A1CF	80	85.185	Echinops_telfairi
ENSORLG00015018569	a1cf	100	76.299	ENSEASG00005012924	A1CF	100	75.935	Equus_asinus_asinus
ENSORLG00015018569	a1cf	100	75.974	ENSECAG00000010424	A1CF	100	75.610	Equus_caballus
ENSORLG00015018569	a1cf	79	65.696	ENSEEUG00000000013	A1CF	100	65.696	Erinaceus_europaeus
ENSORLG00015018569	a1cf	100	81.015	ENSELUG00000003159	a1cf	100	80.196	Esox_lucius
ENSORLG00015018569	a1cf	100	73.693	ENSFCAG00000011179	A1CF	100	74.141	Felis_catus
ENSORLG00015018569	a1cf	100	76.268	ENSFALG00000013183	A1CF	100	75.777	Ficedula_albicollis
ENSORLG00015018569	a1cf	100	74.551	ENSFDAG00000019371	A1CF	100	74.551	Fukomys_damarensis
ENSORLG00015018569	a1cf	100	81.301	ENSFHEG00000019652	a1cf	96	90.625	Fundulus_heteroclitus
ENSORLG00015018569	a1cf	100	77.941	ENSGMOG00000018943	a1cf	100	77.941	Gadus_morhua
ENSORLG00015018569	a1cf	96	76.280	ENSGALG00000003765	A1CF	98	75.768	Gallus_gallus
ENSORLG00015018569	a1cf	100	80.000	ENSGAFG00000014868	a1cf	100	79.675	Gambusia_affinis
ENSORLG00015018569	a1cf	100	84.365	ENSGACG00000010241	a1cf	100	83.713	Gasterosteus_aculeatus
ENSORLG00015018569	a1cf	95	76.339	ENSGAGG00000016508	A1CF	97	75.475	Gopherus_agassizii
ENSORLG00015018569	a1cf	100	75.570	ENSGGOG00000009670	A1CF	100	75.000	Gorilla_gorilla
ENSORLG00015018569	a1cf	100	85.227	ENSHBUG00000021959	a1cf	100	85.877	Haplochromis_burtoni
ENSORLG00015018569	a1cf	100	74.919	ENSHGLG00000008955	A1CF	100	75.244	Heterocephalus_glaber_female
ENSORLG00015018569	a1cf	100	74.267	ENSHGLG00100000518	A1CF	100	74.593	Heterocephalus_glaber_male
ENSORLG00015018569	a1cf	100	72.698	ENSHCOG00000017669	a1cf	100	74.475	Hippocampus_comes
ENSORLG00015018569	a1cf	89	82.936	ENSIPUG00000010367	a1cf	99	80.986	Ictalurus_punctatus
ENSORLG00015018569	a1cf	100	86.710	ENSKMAG00000006568	a1cf	100	86.548	Kryptolebias_marmoratus
ENSORLG00015018569	a1cf	99	86.928	ENSLBEG00000020994	a1cf	99	87.418	Labrus_bergylta
ENSORLG00015018569	a1cf	100	77.578	ENSLACG00000008061	A1CF	100	76.923	Latimeria_chalumnae
ENSORLG00015018569	a1cf	100	79.869	ENSLOCG00000006302	a1cf	100	79.869	Lepisosteus_oculatus
ENSORLG00015018569	a1cf	100	74.551	ENSLAFG00000015462	A1CF	100	75.041	Loxodonta_africana
ENSORLG00015018569	a1cf	100	74.673	ENSMFAG00000035948	A1CF	100	74.304	Macaca_fascicularis
ENSORLG00015018569	a1cf	100	74.673	ENSMMUG00000007077	A1CF	100	74.304	Macaca_mulatta
ENSORLG00015018569	a1cf	100	74.510	ENSMNEG00000031454	A1CF	100	74.141	Macaca_nemestrina
ENSORLG00015018569	a1cf	100	75.654	ENSMLEG00000037223	A1CF	100	75.286	Mandrillus_leucophaeus
ENSORLG00015018569	a1cf	100	83.876	ENSMAMG00000010402	a1cf	100	85.016	Mastacembelus_armatus
ENSORLG00015018569	a1cf	100	85.458	ENSMZEG00005013245	a1cf	100	84.967	Maylandia_zebra
ENSORLG00015018569	a1cf	100	76.471	ENSMGAG00000001507	A1CF	100	75.980	Meleagris_gallopavo
ENSORLG00015018569	a1cf	100	73.736	ENSMAUG00000007422	A1cf	100	73.736	Mesocricetus_auratus
ENSORLG00015018569	a1cf	100	73.539	ENSMICG00000003377	A1CF	100	74.351	Microcebus_murinus
ENSORLG00015018569	a1cf	100	74.756	ENSMOCG00000021536	A1cf	100	74.715	Microtus_ochrogaster
ENSORLG00015018569	a1cf	100	76.105	ENSMMOG00000009422	a1cf	100	76.268	Mola_mola
ENSORLG00015018569	a1cf	92	76.071	ENSMODG00000016478	A1CF	99	76.964	Monodelphis_domestica
ENSORLG00015018569	a1cf	100	77.741	ENSMALG00000012992	a1cf	100	77.250	Monopterus_albus
ENSORLG00015018569	a1cf	100	73.290	MGP_CAROLIEiJ_G0022873	A1cf	100	73.246	Mus_caroli
ENSORLG00015018569	a1cf	100	73.290	ENSMUSG00000052595	A1cf	99	81.605	Mus_musculus
ENSORLG00015018569	a1cf	100	73.290	MGP_PahariEiJ_G0014366	A1cf	100	72.594	Mus_pahari
ENSORLG00015018569	a1cf	100	73.127	MGP_SPRETEiJ_G0023792	A1cf	100	73.083	Mus_spretus
ENSORLG00015018569	a1cf	100	69.722	ENSMPUG00000016971	A1CF	100	69.558	Mustela_putorius_furo
ENSORLG00015018569	a1cf	100	75.654	ENSMLUG00000016071	A1CF	100	75.530	Myotis_lucifugus
ENSORLG00015018569	a1cf	100	74.388	ENSNGAG00000015136	A1cf	100	74.388	Nannospalax_galili
ENSORLG00015018569	a1cf	100	84.903	ENSNBRG00000001712	a1cf	100	85.552	Neolamprologus_brichardi
ENSORLG00015018569	a1cf	100	75.570	ENSNLEG00000012028	A1CF	100	75.204	Nomascus_leucogenys
ENSORLG00015018569	a1cf	94	74.523	ENSMEUG00000015909	A1CF	100	74.177	Notamacropus_eugenii
ENSORLG00015018569	a1cf	88	69.259	ENSOPRG00000010667	A1CF	97	69.118	Ochotona_princeps
ENSORLG00015018569	a1cf	100	85.877	ENSONIG00000019105	a1cf	100	86.039	Oreochromis_niloticus
ENSORLG00015018569	a1cf	79	76.141	ENSOANG00000007360	A1CF	99	76.141	Ornithorhynchus_anatinus
ENSORLG00015018569	a1cf	100	73.779	ENSOCUG00000011587	A1CF	100	73.941	Oryctolagus_cuniculus
ENSORLG00015018569	a1cf	100	95.745	ENSORLG00000013342	a1cf	100	95.745	Oryzias_latipes
ENSORLG00015018569	a1cf	100	99.836	ENSORLG00020000586	a1cf	100	99.836	Oryzias_latipes_hni
ENSORLG00015018569	a1cf	100	93.811	ENSOMEG00000013531	a1cf	100	92.997	Oryzias_melastigma
ENSORLG00015018569	a1cf	100	74.468	ENSOGAG00000012884	A1CF	100	75.450	Otolemur_garnettii
ENSORLG00015018569	a1cf	100	76.183	ENSOARG00000013695	A1CF	100	75.693	Ovis_aries
ENSORLG00015018569	a1cf	98	73.719	ENSPPAG00000028115	A1CF	99	78.978	Pan_paniscus
ENSORLG00015018569	a1cf	100	74.837	ENSPPRG00000012180	A1CF	100	75.286	Panthera_pardus
ENSORLG00015018569	a1cf	100	74.837	ENSPTIG00000021223	A1CF	100	75.286	Panthera_tigris_altaica
ENSORLG00015018569	a1cf	100	75.733	ENSPTRG00000002508	A1CF	100	75.163	Pan_troglodytes
ENSORLG00015018569	a1cf	100	74.673	ENSPANG00000021988	A1CF	100	74.304	Papio_anubis
ENSORLG00015018569	a1cf	100	79.378	ENSPKIG00000025176	a1cf	100	78.887	Paramormyrops_kingsleyae
ENSORLG00015018569	a1cf	100	75.450	ENSPSIG00000010318	A1CF	100	74.632	Pelodiscus_sinensis
ENSORLG00015018569	a1cf	98	69.500	ENSPMGG00000013359	a1cf	99	69.652	Periophthalmus_magnuspinnatus
ENSORLG00015018569	a1cf	100	74.062	ENSPEMG00000015021	A1cf	100	74.062	Peromyscus_maniculatus_bairdii
ENSORLG00015018569	a1cf	100	74.304	ENSPCIG00000002175	A1CF	100	74.959	Phascolarctos_cinereus
ENSORLG00015018569	a1cf	100	88.293	ENSPFOG00000006683	a1cf	100	88.130	Poecilia_formosa
ENSORLG00015018569	a1cf	100	88.293	ENSPFOG00000007437	-	100	88.130	Poecilia_formosa
ENSORLG00015018569	a1cf	100	86.829	ENSPLAG00000000026	a1cf	100	86.667	Poecilia_latipinna
ENSORLG00015018569	a1cf	100	86.829	ENSPLAG00000001210	-	100	86.667	Poecilia_latipinna
ENSORLG00015018569	a1cf	100	80.000	ENSPMEG00000015529	-	100	79.675	Poecilia_mexicana
ENSORLG00015018569	a1cf	100	78.699	ENSPMEG00000000921	a1cf	100	78.374	Poecilia_mexicana
ENSORLG00015018569	a1cf	100	88.130	ENSPREG00000016298	a1cf	100	87.480	Poecilia_reticulata
ENSORLG00015018569	a1cf	100	74.593	ENSPPYG00000002819	A1CF	100	74.225	Pongo_abelii
ENSORLG00015018569	a1cf	80	58.282	ENSPCAG00000006463	A1CF	68	67.568	Procavia_capensis
ENSORLG00015018569	a1cf	100	75.081	ENSPCOG00000024172	A1CF	100	75.896	Propithecus_coquereli
ENSORLG00015018569	a1cf	100	86.688	ENSPNYG00000017944	a1cf	100	87.338	Pundamilia_nyererei
ENSORLG00015018569	a1cf	100	80.195	ENSPNAG00000007704	a1cf	100	79.708	Pygocentrus_nattereri
ENSORLG00015018569	a1cf	100	72.638	ENSRNOG00000033195	A1cf	100	72.594	Rattus_norvegicus
ENSORLG00015018569	a1cf	100	70.847	ENSRBIG00000042892	A1CF	100	72.243	Rhinopithecus_bieti
ENSORLG00015018569	a1cf	100	75.817	ENSRROG00000041398	A1CF	100	75.450	Rhinopithecus_roxellana
ENSORLG00015018569	a1cf	100	75.693	ENSSBOG00000021930	A1CF	100	75.204	Saimiri_boliviensis_boliviensis
ENSORLG00015018569	a1cf	100	76.596	ENSSHAG00000005096	A1CF	100	76.268	Sarcophilus_harrisii
ENSORLG00015018569	a1cf	100	80.227	ENSSFOG00015011774	a1cf	100	79.870	Scleropages_formosus
ENSORLG00015018569	a1cf	100	85.737	ENSSMAG00000013271	a1cf	100	85.251	Scophthalmus_maximus
ENSORLG00015018569	a1cf	100	85.505	ENSSDUG00000013930	a1cf	100	85.179	Seriola_dumerili
ENSORLG00015018569	a1cf	100	77.362	ENSSLDG00000004290	a1cf	100	76.873	Seriola_lalandi_dorsalis
ENSORLG00015018569	a1cf	95	67.238	ENSSARG00000005940	A1CF	95	67.010	Sorex_araneus
ENSORLG00015018569	a1cf	95	74.570	ENSSPUG00000006797	A1CF	95	74.399	Sphenodon_punctatus
ENSORLG00015018569	a1cf	100	76.020	ENSSSCG00000010431	A1CF	100	75.693	Sus_scrofa
ENSORLG00015018569	a1cf	100	77.236	ENSTGUG00000005090	A1CF	100	77.073	Taeniopygia_guttata
ENSORLG00015018569	a1cf	100	83.929	ENSTRUG00000001982	a1cf	100	84.091	Takifugu_rubripes
ENSORLG00015018569	a1cf	100	84.117	ENSTNIG00000003580	a1cf	100	83.144	Tetraodon_nigroviridis
ENSORLG00015018569	a1cf	98	68.833	ENSTTRG00000013190	A1CF	96	68.667	Tursiops_truncatus
ENSORLG00015018569	a1cf	100	74.346	ENSUAMG00000020065	A1CF	100	74.304	Ursus_americanus
ENSORLG00015018569	a1cf	100	75.163	ENSUMAG00000011162	A1CF	100	74.795	Ursus_maritimus
ENSORLG00015018569	a1cf	87	71.190	ENSVPAG00000006130	A1CF	86	71.190	Vicugna_pacos
ENSORLG00015018569	a1cf	100	74.020	ENSVVUG00000002504	A1CF	99	75.133	Vulpes_vulpes
ENSORLG00015018569	a1cf	100	71.031	ENSXETG00000006611	a1cf	100	70.704	Xenopus_tropicalis
ENSORLG00015018569	a1cf	100	87.154	ENSXCOG00000003302	a1cf	100	86.829	Xiphophorus_couchianus
ENSORLG00015018569	a1cf	100	88.455	ENSXMAG00000016703	a1cf	100	88.130	Xiphophorus_maculatus