EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015019014 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: -
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 22903 bases
Position: chr16:29798910-29821812
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015017889	EST1	PF10374.9	1.4e-23	1	1
ENSORLP00015017930	EST1	PF10374.9	1.6e-23	1	1
ENSORLP00015017930	EST1_DNA_bind	PF10373.9	3.6e-41	1	1
ENSORLP00015017889	EST1_DNA_bind	PF10373.9	4.8e-40	1	1
ENSORLP00015017889	PIN_4	PF13638.6	1e-05	1	1
ENSORLP00015017930	PIN_4	PF13638.6	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015026450	-	2991	-	ENSORLP00015017889	996 (aa)	-	-
ENSORLT00015026502	-	7388	-	ENSORLP00015017930	1108 (aa)	-	-

Gene Model

Click here to download ENSORLG00015019014's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015019014's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015019014	smg5	99	65.631	ENSG00000198952	SMG5	99	64.237	Homo_sapiens
ENSORLG00015019014	smg5	100	86.335	ENSAPOG00000019690	smg5	100	85.359	Acanthochromis_polyacanthus
ENSORLG00015019014	smg5	98	64.911	ENSAMEG00000014458	SMG5	100	63.429	Ailuropoda_melanoleuca
ENSORLG00015019014	smg5	100	81.818	ENSACIG00000001353	smg5	99	81.298	Amphilophus_citrinellus
ENSORLG00015019014	smg5	100	87.200	ENSAOCG00000019483	smg5	100	85.943	Amphiprion_ocellaris
ENSORLG00015019014	smg5	100	86.833	ENSAPEG00000022949	smg5	100	86.032	Amphiprion_percula
ENSORLG00015019014	smg5	100	84.698	ENSATEG00000005348	smg5	100	84.389	Anabas_testudineus
ENSORLG00015019014	smg5	98	66.023	ENSAPLG00000010263	SMG5	100	64.479	Anas_platyrhynchos
ENSORLG00015019014	smg5	99	65.437	ENSANAG00000032899	SMG5	99	65.107	Aotus_nancymaae
ENSORLG00015019014	smg5	100	85.511	ENSACLG00000009311	smg5	100	85.053	Astatotilapia_calliptera
ENSORLG00015019014	smg5	100	75.625	ENSAMXG00000024616	smg5	100	75.871	Astyanax_mexicanus
ENSORLG00015019014	smg5	99	39.553	ENSBTAG00000021747	-	85	50.243	Bos_taurus
ENSORLG00015019014	smg5	99	65.953	ENSBTAG00000009435	SMG5	99	64.140	Bos_taurus
ENSORLG00015019014	smg5	99	65.695	ENSCJAG00000005684	SMG5	99	65.107	Callithrix_jacchus
ENSORLG00015019014	smg5	99	65.298	ENSCAFG00000016839	SMG5	99	63.938	Canis_familiaris
ENSORLG00015019014	smg5	99	65.298	ENSCAFG00020006061	SMG5	99	63.938	Canis_lupus_dingo
ENSORLG00015019014	smg5	99	66.277	ENSCHIG00000007709	SMG5	99	64.043	Capra_hircus
ENSORLG00015019014	smg5	98	39.745	ENSCHIG00000006323	-	85	50.620	Capra_hircus
ENSORLG00015019014	smg5	99	65.661	ENSTSYG00000004099	SMG5	99	63.981	Carlito_syrichta
ENSORLG00015019014	smg5	94	50.922	ENSCAPG00000003631	SMG5	100	50.412	Cavia_aperea
ENSORLG00015019014	smg5	99	65.858	ENSCPOG00000015696	SMG5	99	64.752	Cavia_porcellus
ENSORLG00015019014	smg5	99	65.695	ENSCCAG00000027409	SMG5	99	64.912	Cebus_capucinus
ENSORLG00015019014	smg5	99	65.792	ENSCATG00000030539	SMG5	99	64.237	Cercocebus_atys
ENSORLG00015019014	smg5	99	65.437	ENSCLAG00000003983	SMG5	99	64.752	Chinchilla_lanigera
ENSORLG00015019014	smg5	99	65.792	ENSCSAG00000002120	SMG5	99	64.043	Chlorocebus_sabaeus
ENSORLG00015019014	smg5	54	74.729	ENSCHOG00000008741	-	57	75.090	Choloepus_hoffmanni
ENSORLG00015019014	smg5	93	64.307	ENSCPBG00000025848	SMG5	100	63.509	Chrysemys_picta_bellii
ENSORLG00015019014	smg5	92	32.919	ENSCING00000008706	-	84	37.717	Ciona_intestinalis
ENSORLG00015019014	smg5	99	63.521	ENSCANG00000029208	SMG5	99	61.613	Colobus_angolensis_palliatus
ENSORLG00015019014	smg5	99	65.689	ENSCGRG00001006336	Smg5	99	63.946	Cricetulus_griseus_chok1gshd
ENSORLG00015019014	smg5	98	65.672	ENSCGRG00000005111	Smg5	100	63.762	Cricetulus_griseus_crigri
ENSORLG00015019014	smg5	100	81.317	ENSCSEG00000014220	smg5	100	80.516	Cynoglossus_semilaevis
ENSORLG00015019014	smg5	100	77.143	ENSCVAG00000000529	smg5	100	76.673	Cyprinodon_variegatus
ENSORLG00015019014	smg5	100	76.224	ENSDARG00000041481	smg5	100	76.643	Danio_rerio
ENSORLG00015019014	smg5	91	32.975	ENSDNOG00000039862	-	89	37.310	Dasypus_novemcinctus
ENSORLG00015019014	smg5	99	63.557	ENSDNOG00000000051	SMG5	99	61.591	Dasypus_novemcinctus
ENSORLG00015019014	smg5	99	65.986	ENSDORG00000010382	Smg5	99	64.500	Dipodomys_ordii
ENSORLG00015019014	smg5	74	84.466	ENSETEG00000010336	SMG5	81	84.466	Echinops_telfairi
ENSORLG00015019014	smg5	91	45.732	ENSEBUG00000003739	smg5	99	46.368	Eptatretus_burgeri
ENSORLG00015019014	smg5	99	66.504	ENSEASG00005019122	SMG5	99	64.431	Equus_asinus_asinus
ENSORLG00015019014	smg5	99	66.504	ENSECAG00000001389	SMG5	99	64.626	Equus_caballus
ENSORLG00015019014	smg5	74	77.183	ENSEEUG00000012690	SMG5	75	76.338	Erinaceus_europaeus
ENSORLG00015019014	smg5	100	80.267	ENSELUG00000012585	smg5	100	78.793	Esox_lucius
ENSORLG00015019014	smg5	99	65.362	ENSFCAG00000011783	SMG5	99	63.840	Felis_catus
ENSORLG00015019014	smg5	56	71.039	ENSFALG00000001166	-	95	66.951	Ficedula_albicollis
ENSORLG00015019014	smg5	97	65.442	ENSFDAG00000017388	SMG5	100	64.222	Fukomys_damarensis
ENSORLG00015019014	smg5	98	76.359	ENSFHEG00000013939	smg5	95	87.539	Fundulus_heteroclitus
ENSORLG00015019014	smg5	100	76.754	ENSGMOG00000007310	smg5	100	76.754	Gadus_morhua
ENSORLG00015019014	smg5	99	65.521	ENSGALG00000029918	-	99	63.791	Gallus_gallus
ENSORLG00015019014	smg5	92	87.859	ENSGAFG00000021691	smg5	99	87.859	Gambusia_affinis
ENSORLG00015019014	smg5	100	83.437	ENSGACG00000013142	smg5	100	83.199	Gasterosteus_aculeatus
ENSORLG00015019014	smg5	99	66.165	ENSGAGG00000016131	SMG5	99	64.286	Gopherus_agassizii
ENSORLG00015019014	smg5	99	65.598	ENSGGOG00000010932	SMG5	99	64.043	Gorilla_gorilla
ENSORLG00015019014	smg5	100	85.182	ENSHBUG00000008654	smg5	100	85.080	Haplochromis_burtoni
ENSORLG00015019014	smg5	99	65.595	ENSHGLG00000019152	SMG5	99	64.306	Heterocephalus_glaber_female
ENSORLG00015019014	smg5	89	66.087	ENSHGLG00100015948	SMG5	99	64.649	Heterocephalus_glaber_male
ENSORLG00015019014	smg5	99	65.404	ENSHCOG00000010229	smg5	91	82.282	Hippocampus_comes
ENSORLG00015019014	smg5	100	76.398	ENSIPUG00000006624	Smg5	100	75.510	Ictalurus_punctatus
ENSORLG00015019014	smg5	99	65.728	ENSSTOG00000001780	SMG5	99	64.522	Ictidomys_tridecemlineatus
ENSORLG00015019014	smg5	99	65.795	ENSJJAG00000022763	Smg5	99	64.597	Jaculus_jaculus
ENSORLG00015019014	smg5	100	87.022	ENSKMAG00000014586	smg5	100	86.756	Kryptolebias_marmoratus
ENSORLG00015019014	smg5	100	85.485	ENSLBEG00000002145	smg5	100	84.506	Labrus_bergylta
ENSORLG00015019014	smg5	99	59.452	ENSLACG00000010521	SMG5	99	58.389	Latimeria_chalumnae
ENSORLG00015019014	smg5	93	83.486	ENSLOCG00000008380	smg5	99	71.670	Lepisosteus_oculatus
ENSORLG00015019014	smg5	100	65.500	ENSLAFG00000006241	SMG5	100	63.857	Loxodonta_africana
ENSORLG00015019014	smg5	99	65.792	ENSMFAG00000045357	SMG5	99	64.237	Macaca_fascicularis
ENSORLG00015019014	smg5	99	65.951	ENSMMUG00000000090	SMG5	99	64.237	Macaca_mulatta
ENSORLG00015019014	smg5	99	65.695	ENSMNEG00000044425	SMG5	99	64.140	Macaca_nemestrina
ENSORLG00015019014	smg5	99	60.445	ENSMLEG00000041192	SMG5	99	58.955	Mandrillus_leucophaeus
ENSORLG00015019014	smg5	100	84.253	ENSMAMG00000010683	smg5	100	84.342	Mastacembelus_armatus
ENSORLG00015019014	smg5	65	73.901	ENSMZEG00005016543	smg5	100	75.115	Maylandia_zebra
ENSORLG00015019014	smg5	99	79.712	ENSMZEG00005015815	smg5	99	78.942	Maylandia_zebra
ENSORLG00015019014	smg5	99	65.949	ENSMAUG00000010381	Smg5	99	64.105	Mesocricetus_auratus
ENSORLG00015019014	smg5	99	65.433	ENSMICG00000002257	SMG5	99	64.362	Microcebus_murinus
ENSORLG00015019014	smg5	99	65.656	ENSMOCG00000016590	Smg5	99	63.813	Microtus_ochrogaster
ENSORLG00015019014	smg5	100	79.787	ENSMMOG00000017199	smg5	100	79.344	Mola_mola
ENSORLG00015019014	smg5	72	33.760	ENSMODG00000010675	-	88	34.271	Monodelphis_domestica
ENSORLG00015019014	smg5	79	34.527	ENSMODG00000004735	-	88	34.527	Monodelphis_domestica
ENSORLG00015019014	smg5	81	36.207	ENSMODG00000004532	-	87	35.714	Monodelphis_domestica
ENSORLG00015019014	smg5	97	30.983	ENSMODG00000004511	-	77	35.567	Monodelphis_domestica
ENSORLG00015019014	smg5	86	66.555	ENSMODG00000016901	SMG5	98	65.583	Monodelphis_domestica
ENSORLG00015019014	smg5	100	83.126	ENSMALG00000010375	smg5	100	82.012	Monopterus_albus
ENSORLG00015019014	smg5	99	65.234	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSORLG00015019014	smg5	99	65.561	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSORLG00015019014	smg5	99	65.336	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSORLG00015019014	smg5	99	65.366	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSORLG00015019014	smg5	93	64.345	ENSMPUG00000004546	SMG5	100	63.617	Mustela_putorius_furo
ENSORLG00015019014	smg5	99	65.306	ENSMLUG00000008518	SMG5	99	64.820	Myotis_lucifugus
ENSORLG00015019014	smg5	79	49.877	ENSNGAG00000012101	-	86	49.024	Nannospalax_galili
ENSORLG00015019014	smg5	99	64.946	ENSNGAG00000020706	Smg5	99	64.230	Nannospalax_galili
ENSORLG00015019014	smg5	96	81.153	ENSNBRG00000004332	smg5	98	81.173	Neolamprologus_brichardi
ENSORLG00015019014	smg5	99	65.792	ENSNLEG00000012439	SMG5	99	64.140	Nomascus_leucogenys
ENSORLG00015019014	smg5	99	64.981	ENSMEUG00000012834	SMG5	99	64.160	Notamacropus_eugenii
ENSORLG00015019014	smg5	99	65.695	ENSOPRG00000009152	SMG5	99	63.946	Ochotona_princeps
ENSORLG00015019014	smg5	99	65.567	ENSODEG00000012237	SMG5	99	64.981	Octodon_degus
ENSORLG00015019014	smg5	100	85.359	ENSONIG00000008632	smg5	100	84.458	Oreochromis_niloticus
ENSORLG00015019014	smg5	98	65.510	ENSOCUG00000012886	SMG5	100	64.385	Oryctolagus_cuniculus
ENSORLG00015019014	smg5	89	37.568	ENSOCUG00000023338	-	86	45.771	Oryctolagus_cuniculus
ENSORLG00015019014	smg5	100	98.647	ENSORLG00000016239	smg5	100	98.647	Oryzias_latipes
ENSORLG00015019014	smg5	100	99.097	ENSORLG00020013127	smg5	100	99.097	Oryzias_latipes_hni
ENSORLG00015019014	smg5	84	93.985	ENSOMEG00000021330	smg5	92	94.200	Oryzias_melastigma
ENSORLG00015019014	smg5	99	65.430	ENSOGAG00000004966	SMG5	99	64.362	Otolemur_garnettii
ENSORLG00015019014	smg5	99	66.179	ENSOARG00000005778	SMG5	99	64.043	Ovis_aries
ENSORLG00015019014	smg5	99	39.942	ENSOARG00000011963	-	85	50.847	Ovis_aries
ENSORLG00015019014	smg5	99	65.534	ENSPPAG00000011996	SMG5	99	64.140	Pan_paniscus
ENSORLG00015019014	smg5	98	64.841	ENSPPRG00000011901	SMG5	100	63.591	Panthera_pardus
ENSORLG00015019014	smg5	93	63.175	ENSPTIG00000007892	SMG5	87	74.690	Panthera_tigris_altaica
ENSORLG00015019014	smg5	88	76.685	ENSPTRG00000049282	-	99	64.140	Pan_troglodytes
ENSORLG00015019014	smg5	99	65.534	ENSPTRG00000023925	SMG5	99	64.140	Pan_troglodytes
ENSORLG00015019014	smg5	99	65.792	ENSPANG00000011201	SMG5	99	64.237	Papio_anubis
ENSORLG00015019014	smg5	100	76.676	ENSPKIG00000009402	smg5	100	75.413	Paramormyrops_kingsleyae
ENSORLG00015019014	smg5	98	67.745	ENSPSIG00000015198	SMG5	100	65.782	Pelodiscus_sinensis
ENSORLG00015019014	smg5	100	71.069	ENSPMGG00000010465	smg5	100	69.973	Periophthalmus_magnuspinnatus
ENSORLG00015019014	smg5	99	65.851	ENSPEMG00000001819	Smg5	99	63.911	Peromyscus_maniculatus_bairdii
ENSORLG00015019014	smg5	98	48.409	ENSPMAG00000000410	smg5	99	48.075	Petromyzon_marinus
ENSORLG00015019014	smg5	99	66.503	ENSPCIG00000018938	SMG5	99	65.000	Phascolarctos_cinereus
ENSORLG00015019014	smg5	100	85.307	ENSPFOG00000010191	smg5	100	84.911	Poecilia_formosa
ENSORLG00015019014	smg5	100	85.446	ENSPLAG00000009332	smg5	100	85.000	Poecilia_latipinna
ENSORLG00015019014	smg5	100	85.307	ENSPMEG00000014105	smg5	100	84.821	Poecilia_mexicana
ENSORLG00015019014	smg5	100	85.446	ENSPREG00000017713	smg5	100	85.179	Poecilia_reticulata
ENSORLG00015019014	smg5	99	65.695	ENSPPYG00000000723	SMG5	99	64.237	Pongo_abelii
ENSORLG00015019014	smg5	76	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSORLG00015019014	smg5	99	65.564	ENSPCOG00000004741	SMG5	99	64.460	Propithecus_coquereli
ENSORLG00015019014	smg5	99	59.572	ENSPVAG00000016748	SMG5	99	58.738	Pteropus_vampyrus
ENSORLG00015019014	smg5	100	84.704	ENSPNYG00000013397	smg5	100	84.248	Pundamilia_nyererei
ENSORLG00015019014	smg5	100	76.046	ENSPNAG00000028363	smg5	100	75.644	Pygocentrus_nattereri
ENSORLG00015019014	smg5	99	65.366	ENSRNOG00000019590	Smg5	99	63.619	Rattus_norvegicus
ENSORLG00015019014	smg5	99	65.889	ENSRBIG00000027428	SMG5	99	64.237	Rhinopithecus_bieti
ENSORLG00015019014	smg5	99	65.889	ENSRROG00000030035	SMG5	99	64.237	Rhinopithecus_roxellana
ENSORLG00015019014	smg5	99	65.825	ENSSBOG00000033339	SMG5	99	65.107	Saimiri_boliviensis_boliviensis
ENSORLG00015019014	smg5	65	34.316	ENSSHAG00000000935	-	88	35.981	Sarcophilus_harrisii
ENSORLG00015019014	smg5	98	65.510	ENSSHAG00000014163	SMG5	100	64.519	Sarcophilus_harrisii
ENSORLG00015019014	smg5	82	36.099	ENSSHAG00000000561	-	91	36.473	Sarcophilus_harrisii
ENSORLG00015019014	smg5	99	30.869	ENSSHAG00000009572	-	80	41.007	Sarcophilus_harrisii
ENSORLG00015019014	smg5	100	77.264	ENSSFOG00015024175	smg5	100	76.015	Scleropages_formosus
ENSORLG00015019014	smg5	100	84.431	ENSSMAG00000013059	smg5	100	83.897	Scophthalmus_maximus
ENSORLG00015019014	smg5	100	86.549	ENSSDUG00000007122	smg5	100	85.221	Seriola_dumerili
ENSORLG00015019014	smg5	100	86.424	ENSSLDG00000011418	smg5	100	85.980	Seriola_lalandi_dorsalis
ENSORLG00015019014	smg5	85	67.986	ENSSARG00000012484	SMG5	94	67.986	Sorex_araneus
ENSORLG00015019014	smg5	93	63.781	ENSSPUG00000002260	SMG5	100	62.326	Sphenodon_punctatus
ENSORLG00015019014	smg5	100	86.348	ENSSPAG00000014266	smg5	100	85.284	Stegastes_partitus
ENSORLG00015019014	smg5	99	51.881	ENSSSCG00000039308	-	99	50.689	Sus_scrofa
ENSORLG00015019014	smg5	99	66.407	ENSSSCG00000006490	-	100	63.806	Sus_scrofa
ENSORLG00015019014	smg5	99	67.871	ENSTGUG00000003748	-	99	65.861	Taeniopygia_guttata
ENSORLG00015019014	smg5	100	78.388	ENSTRUG00000012580	smg5	100	78.559	Takifugu_rubripes
ENSORLG00015019014	smg5	100	79.170	ENSTNIG00000010303	smg5	100	79.078	Tetraodon_nigroviridis
ENSORLG00015019014	smg5	59	83.251	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSORLG00015019014	smg5	99	62.391	ENSTTRG00000001401	SMG5	99	60.485	Tursiops_truncatus
ENSORLG00015019014	smg5	99	65.132	ENSUAMG00000013721	SMG5	99	63.805	Ursus_americanus
ENSORLG00015019014	smg5	99	61.341	ENSUMAG00000018041	SMG5	95	72.517	Ursus_maritimus
ENSORLG00015019014	smg5	92	71.782	ENSVPAG00000009446	SMG5	99	56.548	Vicugna_pacos
ENSORLG00015019014	smg5	99	65.494	ENSVVUG00000005887	SMG5	99	64.035	Vulpes_vulpes
ENSORLG00015019014	smg5	79	54.237	ENSXETG00000033791	SMG5	95	57.386	Xenopus_tropicalis
ENSORLG00015019014	smg5	81	89.560	ENSXCOG00000004379	smg5	99	89.560	Xiphophorus_couchianus
ENSORLG00015019014	smg5	100	84.911	ENSXMAG00000013499	smg5	100	84.464	Xiphophorus_maculatus