EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015019114 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: -
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 15081 bases
Position: chr9:18462647-18477727
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015018033	ResIII	PF04851.15	8.6e-27	1	2
ENSORLP00015018033	ResIII	PF04851.15	8.6e-27	2	2
ENSORLP00015018067	ResIII	PF04851.15	9.2e-27	1	2
ENSORLP00015018067	ResIII	PF04851.15	9.2e-27	2	2
ENSORLP00015018033	DEAD	PF00270.29	3.7e-54	1	2
ENSORLP00015018033	DEAD	PF00270.29	3.7e-54	2	2
ENSORLP00015018067	DEAD	PF00270.29	4.7e-54	1	2
ENSORLP00015018067	DEAD	PF00270.29	4.7e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015026610	-	9287	-	ENSORLP00015018033	1944 (aa)	-	-
ENSORLT00015034996	-	9230	-	ENSORLP00015018067	2134 (aa)	-	-

Gene Model

Click here to download ENSORLG00015019114's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015019114's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015019114	snrnp200	88	45.424	ENSORLG00015009231	ascc3	89	44.421

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015019114	snrnp200	100	90.339	ENSG00000144028	SNRNP200	100	90.309	Homo_sapiens
ENSORLG00015019114	snrnp200	100	96.626	ENSAPOG00000010223	snrnp200	99	96.626	Acanthochromis_polyacanthus
ENSORLG00015019114	snrnp200	100	90.288	ENSAMEG00000008996	SNRNP200	100	90.262	Ailuropoda_melanoleuca
ENSORLG00015019114	snrnp200	99	96.698	ENSACIG00000001764	snrnp200	98	96.570	Amphilophus_citrinellus
ENSORLG00015019114	snrnp200	100	96.439	ENSAOCG00000024593	snrnp200	100	95.766	Amphiprion_ocellaris
ENSORLG00015019114	snrnp200	99	95.773	ENSAPEG00000012554	snrnp200	100	95.766	Amphiprion_percula
ENSORLG00015019114	snrnp200	100	96.439	ENSATEG00000022522	snrnp200	99	96.439	Anabas_testudineus
ENSORLG00015019114	snrnp200	100	90.442	ENSAPLG00000004313	SNRNP200	100	90.335	Anas_platyrhynchos
ENSORLG00015019114	snrnp200	99	89.348	ENSACAG00000000434	SNRNP200	100	89.348	Anolis_carolinensis
ENSORLG00015019114	snrnp200	99	89.944	ENSANAG00000036625	SNRNP200	100	86.735	Aotus_nancymaae
ENSORLG00015019114	snrnp200	99	96.098	ENSACLG00000011188	snrnp200	99	96.064	Astatotilapia_calliptera
ENSORLG00015019114	snrnp200	99	93.371	ENSAMXG00000005684	snrnp200	99	93.346	Astyanax_mexicanus
ENSORLG00015019114	snrnp200	100	89.934	ENSBTAG00000000848	SNRNP200	100	89.934	Bos_taurus
ENSORLG00015019114	snrnp200	100	90.339	ENSCJAG00000007514	SNRNP200	100	90.309	Callithrix_jacchus
ENSORLG00015019114	snrnp200	100	89.501	ENSCAFG00020019979	SNRNP200	100	91.482	Canis_lupus_dingo
ENSORLG00015019114	snrnp200	100	89.981	ENSCHIG00000020611	SNRNP200	100	89.981	Capra_hircus
ENSORLG00015019114	snrnp200	100	90.391	ENSTSYG00000010467	SNRNP200	100	90.356	Carlito_syrichta
ENSORLG00015019114	snrnp200	100	89.954	ENSCAPG00000017234	SNRNP200	99	89.845	Cavia_aperea
ENSORLG00015019114	snrnp200	100	90.185	ENSCPOG00000006776	SNRNP200	100	90.169	Cavia_porcellus
ENSORLG00015019114	snrnp200	100	90.339	ENSCCAG00000033962	SNRNP200	100	90.309	Cebus_capucinus
ENSORLG00015019114	snrnp200	100	90.339	ENSCATG00000015790	SNRNP200	100	90.309	Cercocebus_atys
ENSORLG00015019114	snrnp200	100	90.236	ENSCLAG00000004116	SNRNP200	100	90.215	Chinchilla_lanigera
ENSORLG00015019114	snrnp200	100	90.391	ENSCSAG00000017369	SNRNP200	100	90.356	Chlorocebus_sabaeus
ENSORLG00015019114	snrnp200	75	92.126	ENSCHOG00000012981	-	58	92.126	Choloepus_hoffmanni
ENSORLG00015019114	snrnp200	100	90.508	ENSCPBG00000022571	SNRNP200	99	93.617	Chrysemys_picta_bellii
ENSORLG00015019114	snrnp200	99	76.000	ENSCING00000005082	-	99	75.759	Ciona_intestinalis
ENSORLG00015019114	snrnp200	100	90.288	ENSCANG00000033932	SNRNP200	100	90.095	Colobus_angolensis_palliatus
ENSORLG00015019114	snrnp200	100	90.309	ENSCGRG00001022610	Snrnp200	100	90.309	Cricetulus_griseus_chok1gshd
ENSORLG00015019114	snrnp200	100	89.808	ENSCGRG00000016472	Snrnp200	100	89.808	Cricetulus_griseus_crigri
ENSORLG00015019114	snrnp200	100	94.939	ENSCSEG00000016399	snrnp200	100	94.939	Cynoglossus_semilaevis
ENSORLG00015019114	snrnp200	100	91.143	ENSCVAG00000017631	snrnp200	99	91.143	Cyprinodon_variegatus
ENSORLG00015019114	snrnp200	100	93.205	ENSDARG00000077536	snrnp200	99	93.205	Danio_rerio
ENSORLG00015019114	snrnp200	100	88.904	ENSDNOG00000011227	SNRNP200	100	88.904	Dasypus_novemcinctus
ENSORLG00015019114	snrnp200	100	90.200	ENSDORG00000005861	Snrnp200	100	87.944	Dipodomys_ordii
ENSORLG00015019114	snrnp200	100	73.253	FBgn0263599	l(3)72Ab	99	73.253	Drosophila_melanogaster
ENSORLG00015019114	snrnp200	95	89.492	ENSETEG00000000162	SNRNP200	74	89.492	Echinops_telfairi
ENSORLG00015019114	snrnp200	91	80.269	ENSEBUG00000016524	snrnp200	95	80.269	Eptatretus_burgeri
ENSORLG00015019114	snrnp200	100	89.309	ENSEASG00005001884	SNRNP200	100	89.184	Equus_asinus_asinus
ENSORLG00015019114	snrnp200	100	90.288	ENSECAG00000019675	SNRNP200	100	90.262	Equus_caballus
ENSORLG00015019114	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSORLG00015019114	snrnp200	99	95.150	ENSELUG00000018948	snrnp200	99	94.988	Esox_lucius
ENSORLG00015019114	snrnp200	100	90.339	ENSFCAG00000010699	SNRNP200	100	90.309	Felis_catus
ENSORLG00015019114	snrnp200	97	84.852	ENSFALG00000001368	-	95	84.852	Ficedula_albicollis
ENSORLG00015019114	snrnp200	100	90.134	ENSFDAG00000004683	SNRNP200	100	90.122	Fukomys_damarensis
ENSORLG00015019114	snrnp200	100	93.674	ENSFHEG00000003786	snrnp200	99	93.674	Fundulus_heteroclitus
ENSORLG00015019114	snrnp200	100	94.042	ENSGMOG00000004881	snrnp200	99	93.826	Gadus_morhua
ENSORLG00015019114	snrnp200	100	93.580	ENSGAFG00000010807	snrnp200	99	93.580	Gambusia_affinis
ENSORLG00015019114	snrnp200	100	95.840	ENSGACG00000011474	snrnp200	99	95.605	Gasterosteus_aculeatus
ENSORLG00015019114	snrnp200	99	90.540	ENSGAGG00000016069	SNRNP200	99	90.540	Gopherus_agassizii
ENSORLG00015019114	snrnp200	100	90.339	ENSGGOG00000005174	SNRNP200	100	90.309	Gorilla_gorilla
ENSORLG00015019114	snrnp200	99	93.418	ENSHBUG00000011322	snrnp200	99	93.586	Haplochromis_burtoni
ENSORLG00015019114	snrnp200	100	90.185	ENSHGLG00000006654	SNRNP200	100	90.169	Heterocephalus_glaber_female
ENSORLG00015019114	snrnp200	100	90.185	ENSHGLG00100018594	SNRNP200	100	90.169	Heterocephalus_glaber_male
ENSORLG00015019114	snrnp200	100	90.339	ENSSTOG00000016351	SNRNP200	100	90.309	Ictidomys_tridecemlineatus
ENSORLG00015019114	snrnp200	100	90.082	ENSJJAG00000023659	Snrnp200	100	90.075	Jaculus_jaculus
ENSORLG00015019114	snrnp200	100	93.508	ENSKMAG00000003665	snrnp200	99	93.508	Kryptolebias_marmoratus
ENSORLG00015019114	snrnp200	100	96.348	ENSLBEG00000021585	snrnp200	99	96.345	Labrus_bergylta
ENSORLG00015019114	snrnp200	90	91.681	ENSLACG00000000226	SNRNP200	100	91.213	Latimeria_chalumnae
ENSORLG00015019114	snrnp200	100	93.114	ENSLOCG00000015198	snrnp200	99	93.071	Lepisosteus_oculatus
ENSORLG00015019114	snrnp200	100	90.082	ENSLAFG00000015626	SNRNP200	100	90.075	Loxodonta_africana
ENSORLG00015019114	snrnp200	100	90.288	ENSMFAG00000040174	SNRNP200	99	91.570	Macaca_fascicularis
ENSORLG00015019114	snrnp200	100	90.288	ENSMMUG00000023261	SNRNP200	100	90.262	Macaca_mulatta
ENSORLG00015019114	snrnp200	100	90.236	ENSMNEG00000032398	SNRNP200	100	90.215	Macaca_nemestrina
ENSORLG00015019114	snrnp200	100	90.339	ENSMLEG00000019083	SNRNP200	99	91.570	Mandrillus_leucophaeus
ENSORLG00015019114	snrnp200	100	95.835	ENSMAMG00000007851	snrnp200	99	95.738	Mastacembelus_armatus
ENSORLG00015019114	snrnp200	99	93.418	ENSMZEG00005010787	snrnp200	99	93.586	Maylandia_zebra
ENSORLG00015019114	snrnp200	100	90.134	ENSMGAG00000001831	SNRNP200	99	90.049	Meleagris_gallopavo
ENSORLG00015019114	snrnp200	100	90.356	ENSMAUG00000011825	Snrnp200	100	90.356	Mesocricetus_auratus
ENSORLG00015019114	snrnp200	100	90.391	ENSMICG00000004710	SNRNP200	100	90.356	Microcebus_murinus
ENSORLG00015019114	snrnp200	100	88.624	ENSMOCG00000011814	Snrnp200	100	88.624	Microtus_ochrogaster
ENSORLG00015019114	snrnp200	99	94.029	ENSMMOG00000014167	snrnp200	99	94.002	Mola_mola
ENSORLG00015019114	snrnp200	100	90.288	ENSMODG00000008475	SNRNP200	100	90.262	Monodelphis_domestica
ENSORLG00015019114	snrnp200	99	96.231	ENSMALG00000001973	snrnp200	99	96.157	Monopterus_albus
ENSORLG00015019114	snrnp200	100	90.236	MGP_CAROLIEiJ_G0024250	Snrnp200	100	90.215	Mus_caroli
ENSORLG00015019114	snrnp200	100	90.288	ENSMUSG00000003660	Snrnp200	100	90.262	Mus_musculus
ENSORLG00015019114	snrnp200	100	90.288	MGP_PahariEiJ_G0025695	Snrnp200	100	90.262	Mus_pahari
ENSORLG00015019114	snrnp200	98	92.541	MGP_SPRETEiJ_G0025170	Snrnp200	100	92.541	Mus_spretus
ENSORLG00015019114	snrnp200	100	90.339	ENSMPUG00000008949	SNRNP200	100	90.309	Mustela_putorius_furo
ENSORLG00015019114	snrnp200	100	87.359	ENSMLUG00000027511	-	100	87.172	Myotis_lucifugus
ENSORLG00015019114	snrnp200	100	89.985	ENSMLUG00000010493	SNRNP200	100	89.902	Myotis_lucifugus
ENSORLG00015019114	snrnp200	100	90.339	ENSNGAG00000021993	Snrnp200	100	90.309	Nannospalax_galili
ENSORLG00015019114	snrnp200	99	96.335	ENSNBRG00000017960	snrnp200	98	96.335	Neolamprologus_brichardi
ENSORLG00015019114	snrnp200	100	86.192	ENSNLEG00000000025	SNRNP200	100	86.192	Nomascus_leucogenys
ENSORLG00015019114	snrnp200	100	94.845	ENSMEUG00000010532	SNRNP200	79	92.381	Notamacropus_eugenii
ENSORLG00015019114	snrnp200	100	89.260	ENSOPRG00000015464	SNRNP200	100	87.032	Ochotona_princeps
ENSORLG00015019114	snrnp200	100	90.185	ENSODEG00000008366	SNRNP200	100	90.169	Octodon_degus
ENSORLG00015019114	snrnp200	99	96.004	ENSONIG00000010714	snrnp200	99	95.970	Oreochromis_niloticus
ENSORLG00015019114	snrnp200	100	90.391	ENSOCUG00000009864	SNRNP200	100	90.356	Oryctolagus_cuniculus
ENSORLG00015019114	snrnp200	100	99.794	ENSORLG00000012286	snrnp200	100	99.766	Oryzias_latipes
ENSORLG00015019114	snrnp200	100	99.906	ENSORLG00020004648	snrnp200	100	99.906	Oryzias_latipes_hni
ENSORLG00015019114	snrnp200	100	99.391	ENSOMEG00000011834	snrnp200	99	99.391	Oryzias_melastigma
ENSORLG00015019114	snrnp200	100	90.391	ENSOGAG00000006879	SNRNP200	100	90.356	Otolemur_garnettii
ENSORLG00015019114	snrnp200	100	89.284	ENSOARG00000013949	SNRNP200	100	89.284	Ovis_aries
ENSORLG00015019114	snrnp200	100	90.339	ENSPPAG00000041559	SNRNP200	100	90.309	Pan_paniscus
ENSORLG00015019114	snrnp200	100	90.339	ENSPPRG00000004435	SNRNP200	100	90.309	Panthera_pardus
ENSORLG00015019114	snrnp200	100	89.888	ENSPTIG00000006380	SNRNP200	100	89.888	Panthera_tigris_altaica
ENSORLG00015019114	snrnp200	100	90.339	ENSPTRG00000012230	SNRNP200	100	90.309	Pan_troglodytes
ENSORLG00015019114	snrnp200	100	90.288	ENSPANG00000006017	SNRNP200	100	90.262	Papio_anubis
ENSORLG00015019114	snrnp200	100	93.677	ENSPKIG00000014762	snrnp200	99	93.677	Paramormyrops_kingsleyae
ENSORLG00015019114	snrnp200	100	89.471	ENSPSIG00000008580	SNRNP200	100	89.471	Pelodiscus_sinensis
ENSORLG00015019114	snrnp200	100	90.134	ENSPCIG00000023050	SNRNP200	100	90.122	Phascolarctos_cinereus
ENSORLG00015019114	snrnp200	100	96.300	ENSPFOG00000015110	snrnp200	99	96.300	Poecilia_formosa
ENSORLG00015019114	snrnp200	99	96.605	ENSPLAG00000006711	snrnp200	99	96.590	Poecilia_latipinna
ENSORLG00015019114	snrnp200	99	96.307	ENSPMEG00000021166	snrnp200	99	96.315	Poecilia_mexicana
ENSORLG00015019114	snrnp200	100	96.204	ENSPREG00000008875	snrnp200	99	96.204	Poecilia_reticulata
ENSORLG00015019114	snrnp200	100	90.339	ENSPPYG00000012068	SNRNP200	100	90.309	Pongo_abelii
ENSORLG00015019114	snrnp200	98	93.590	ENSPCAG00000008536	SNRNP200	86	95.745	Procavia_capensis
ENSORLG00015019114	snrnp200	100	90.339	ENSPCOG00000024608	SNRNP200	100	90.309	Propithecus_coquereli
ENSORLG00015019114	snrnp200	96	90.890	ENSPVAG00000005860	SNRNP200	93	90.890	Pteropus_vampyrus
ENSORLG00015019114	snrnp200	99	91.327	ENSPNYG00000017476	snrnp200	99	91.308	Pundamilia_nyererei
ENSORLG00015019114	snrnp200	100	89.415	ENSPNAG00000010998	snrnp200	99	89.415	Pygocentrus_nattereri
ENSORLG00015019114	snrnp200	100	90.356	ENSRNOG00000012157	Snrnp200	100	90.356	Rattus_norvegicus
ENSORLG00015019114	snrnp200	100	90.339	ENSRBIG00000044690	-	100	90.309	Rhinopithecus_bieti
ENSORLG00015019114	snrnp200	100	90.339	ENSRROG00000037952	-	100	90.309	Rhinopithecus_roxellana
ENSORLG00015019114	snrnp200	100	90.339	ENSSBOG00000035471	SNRNP200	100	90.309	Saimiri_boliviensis_boliviensis
ENSORLG00015019114	snrnp200	100	90.134	ENSSHAG00000000758	SNRNP200	99	90.049	Sarcophilus_harrisii
ENSORLG00015019114	snrnp200	99	93.797	ENSSFOG00015018826	snrnp200	99	93.770	Scleropages_formosus
ENSORLG00015019114	snrnp200	100	96.553	ENSSMAG00000005463	snrnp200	99	96.677	Scophthalmus_maximus
ENSORLG00015019114	snrnp200	100	96.673	ENSSDUG00000021410	snrnp200	99	96.673	Seriola_dumerili
ENSORLG00015019114	snrnp200	100	96.485	ENSSLDG00000010884	snrnp200	99	96.485	Seriola_lalandi_dorsalis
ENSORLG00015019114	snrnp200	95	87.484	ENSSARG00000010728	SNRNP200	96	87.484	Sorex_araneus
ENSORLG00015019114	snrnp200	100	90.699	ENSSPUG00000003726	-	100	90.590	Sphenodon_punctatus
ENSORLG00015019114	snrnp200	100	96.767	ENSSPAG00000001842	snrnp200	99	96.767	Stegastes_partitus
ENSORLG00015019114	snrnp200	100	90.391	ENSSSCG00000008127	SNRNP200	100	90.356	Sus_scrofa
ENSORLG00015019114	snrnp200	99	82.086	ENSTGUG00000014475	-	100	82.086	Taeniopygia_guttata
ENSORLG00015019114	snrnp200	99	95.487	ENSTRUG00000001307	snrnp200	99	95.455	Takifugu_rubripes
ENSORLG00015019114	snrnp200	100	93.543	ENSTNIG00000004320	snrnp200	100	83.544	Tetraodon_nigroviridis
ENSORLG00015019114	snrnp200	82	93.897	ENSTBEG00000003329	-	67	93.897	Tupaia_belangeri
ENSORLG00015019114	snrnp200	100	90.339	ENSTTRG00000004983	SNRNP200	100	90.075	Tursiops_truncatus
ENSORLG00015019114	snrnp200	72	86.445	ENSUAMG00000008395	-	95	82.655	Ursus_americanus
ENSORLG00015019114	snrnp200	100	90.339	ENSUMAG00000012385	SNRNP200	100	90.309	Ursus_maritimus
ENSORLG00015019114	snrnp200	87	93.966	ENSVPAG00000006434	SNRNP200	66	93.966	Vicugna_pacos
ENSORLG00015019114	snrnp200	100	90.108	ENSVVUG00000026247	SNRNP200	100	90.098	Vulpes_vulpes
ENSORLG00015019114	snrnp200	100	89.944	ENSXETG00000001243	snrnp200	100	89.944	Xenopus_tropicalis
ENSORLG00015019114	snrnp200	99	96.468	ENSXMAG00000002058	snrnp200	98	96.463	Xiphophorus_maculatus