EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015019421 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 16788 bases
Position: chr13:8192195-8208982
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015017905	Npa1	PF11707.8	7e-81	1	1
ENSORLP00015017375	Npa1	PF11707.8	1.2e-79	1	1
ENSORLP00015033370	Npa1	PF11707.8	9e-79	1	1
ENSORLP00015017123	Npa1	PF11707.8	1.1e-78	1	1
ENSORLP00015017178	Npa1	PF11707.8	7e-78	1	1
ENSORLP00015017284	Npa1	PF11707.8	1.5e-76	1	1
ENSORLP00015033068	Npa1	PF11707.8	6.5e-73	1	1
ENSORLP00015033148	Npa1	PF11707.8	2.4e-56	1	2
ENSORLP00015033148	Npa1	PF11707.8	2.4e-56	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015025554	-	6210	-	ENSORLP00015017178	2069 (aa)	-	-
ENSORLT00015025656	-	6213	-	ENSORLP00015033068	2070 (aa)	-	-
ENSORLT00015026206	-	6270	-	ENSORLP00015033370	2089 (aa)	-	-
ENSORLT00015025501	-	6309	-	ENSORLP00015017123	2102 (aa)	-	-
ENSORLT00015025796	-	6552	-	ENSORLP00015017375	2183 (aa)	-	-
ENSORLT00015026460	-	6318	-	ENSORLP00015017905	2105 (aa)	-	-
ENSORLT00015025693	-	6318	-	ENSORLP00015017284	2105 (aa)	-	-
ENSORLT00015025803	-	6402	-	ENSORLP00015033148	2133 (aa)	-	-

Gene Model

Click here to download ENSORLG00015019421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015019421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015019421	urb1	97	46.575	ENSG00000142207	URB1	99	42.451	Homo_sapiens
ENSORLG00015019421	urb1	99	67.848	ENSAPOG00000020308	urb1	99	65.049	Acanthochromis_polyacanthus
ENSORLG00015019421	urb1	98	49.300	ENSAMEG00000011998	URB1	99	42.770	Ailuropoda_melanoleuca
ENSORLG00015019421	urb1	94	73.204	ENSACIG00000003248	urb1	89	73.204	Amphilophus_citrinellus
ENSORLG00015019421	urb1	97	71.217	ENSAOCG00000010364	urb1	95	71.217	Amphiprion_ocellaris
ENSORLG00015019421	urb1	97	71.786	ENSAPEG00000010758	urb1	99	71.786	Amphiprion_percula
ENSORLG00015019421	urb1	99	73.407	ENSATEG00000011790	urb1	93	73.407	Anabas_testudineus
ENSORLG00015019421	urb1	96	58.571	ENSAPLG00000012791	URB1	97	58.571	Anas_platyrhynchos
ENSORLG00015019421	urb1	99	52.941	ENSACAG00000002817	URB1	92	53.501	Anolis_carolinensis
ENSORLG00015019421	urb1	97	46.521	ENSANAG00000024617	URB1	95	46.442	Aotus_nancymaae
ENSORLG00015019421	urb1	99	67.481	ENSACLG00000024865	urb1	99	65.755	Astatotilapia_calliptera
ENSORLG00015019421	urb1	99	48.283	ENSAMXG00000012306	urb1	97	48.337	Astyanax_mexicanus
ENSORLG00015019421	urb1	98	49.300	ENSBTAG00000012412	URB1	99	42.050	Bos_taurus
ENSORLG00015019421	urb1	97	46.313	ENSCJAG00000009118	URB1	95	46.237	Callithrix_jacchus
ENSORLG00015019421	urb1	99	48.739	ENSCAFG00000008892	URB1	99	41.917	Canis_familiaris
ENSORLG00015019421	urb1	99	48.739	ENSCAFG00020025987	-	92	48.739	Canis_lupus_dingo
ENSORLG00015019421	urb1	99	44.382	ENSCAFG00020025994	-	99	41.473	Canis_lupus_dingo
ENSORLG00015019421	urb1	97	45.657	ENSCHIG00000015645	URB1	99	41.277	Capra_hircus
ENSORLG00015019421	urb1	99	49.300	ENSTSYG00000013286	URB1	92	49.300	Carlito_syrichta
ENSORLG00015019421	urb1	96	45.952	ENSCAPG00000015589	URB1	99	41.562	Cavia_aperea
ENSORLG00015019421	urb1	98	46.442	ENSCPOG00000006748	URB1	95	46.442	Cavia_porcellus
ENSORLG00015019421	urb1	97	46.572	ENSCCAG00000021299	URB1	95	46.493	Cebus_capucinus
ENSORLG00015019421	urb1	97	47.213	ENSCATG00000042630	URB1	95	47.078	Cercocebus_atys
ENSORLG00015019421	urb1	97	50.279	ENSCLAG00000005262	URB1	92	50.279	Chinchilla_lanigera
ENSORLG00015019421	urb1	97	46.271	ENSCSAG00000009584	URB1	95	46.146	Chlorocebus_sabaeus
ENSORLG00015019421	urb1	99	54.891	ENSCPBG00000006454	URB1	97	54.891	Chrysemys_picta_bellii
ENSORLG00015019421	urb1	97	47.233	ENSCANG00000031088	URB1	95	47.075	Colobus_angolensis_palliatus
ENSORLG00015019421	urb1	96	46.154	ENSCGRG00001010616	Urb1	95	45.901	Cricetulus_griseus_chok1gshd
ENSORLG00015019421	urb1	95	46.456	ENSCGRG00000015840	Urb1	95	46.456	Cricetulus_griseus_crigri
ENSORLG00015019421	urb1	98	61.838	ENSCSEG00000012616	urb1	98	69.832	Cynoglossus_semilaevis
ENSORLG00015019421	urb1	96	72.000	ENSCVAG00000009076	urb1	99	71.882	Cyprinodon_variegatus
ENSORLG00015019421	urb1	99	62.567	ENSDARG00000060308	urb1	93	62.567	Danio_rerio
ENSORLG00015019421	urb1	90	45.253	ENSDNOG00000015586	URB1	99	45.253	Dasypus_novemcinctus
ENSORLG00015019421	urb1	97	46.267	ENSDORG00000006735	Urb1	99	42.304	Dipodomys_ordii
ENSORLG00015019421	urb1	85	52.533	ENSETEG00000009080	URB1	84	52.075	Echinops_telfairi
ENSORLG00015019421	urb1	99	49.860	ENSEASG00005007711	URB1	99	44.644	Equus_asinus_asinus
ENSORLG00015019421	urb1	99	49.860	ENSECAG00000013206	URB1	99	54.233	Equus_caballus
ENSORLG00015019421	urb1	97	60.274	ENSELUG00000020516	urb1	99	54.157	Esox_lucius
ENSORLG00015019421	urb1	99	48.459	ENSFCAG00000002177	URB1	99	42.496	Felis_catus
ENSORLG00015019421	urb1	96	51.026	ENSFALG00000004636	URB1	99	40.328	Ficedula_albicollis
ENSORLG00015019421	urb1	97	46.386	ENSFDAG00000007288	URB1	91	46.237	Fukomys_damarensis
ENSORLG00015019421	urb1	99	67.218	ENSFHEG00000000202	urb1	99	64.014	Fundulus_heteroclitus
ENSORLG00015019421	urb1	92	61.708	ENSGMOG00000001838	urb1	94	55.989	Gadus_morhua
ENSORLG00015019421	urb1	98	55.676	ENSGALG00000015887	URB1	96	55.676	Gallus_gallus
ENSORLG00015019421	urb1	97	67.625	ENSGAFG00000020694	urb1	97	69.744	Gambusia_affinis
ENSORLG00015019421	urb1	99	74.451	ENSGACG00000011703	urb1	93	74.451	Gasterosteus_aculeatus
ENSORLG00015019421	urb1	99	53.804	ENSGAGG00000022544	URB1	97	53.804	Gopherus_agassizii
ENSORLG00015019421	urb1	97	46.575	ENSGGOG00000000285	URB1	95	46.446	Gorilla_gorilla
ENSORLG00015019421	urb1	99	74.309	ENSHBUG00000001904	urb1	93	74.309	Haplochromis_burtoni
ENSORLG00015019421	urb1	98	45.242	ENSHGLG00000004907	URB1	95	45.242	Heterocephalus_glaber_female
ENSORLG00015019421	urb1	98	45.784	ENSHGLG00100010749	URB1	95	45.784	Heterocephalus_glaber_male
ENSORLG00015019421	urb1	73	67.311	ENSHCOG00000018683	urb1	96	67.892	Hippocampus_comes
ENSORLG00015019421	urb1	99	59.444	ENSIPUG00000014721	urb1	98	59.444	Ictalurus_punctatus
ENSORLG00015019421	urb1	98	49.721	ENSSTOG00000004539	URB1	99	42.209	Ictidomys_tridecemlineatus
ENSORLG00015019421	urb1	93	72.577	ENSKMAG00000006001	urb1	96	72.577	Kryptolebias_marmoratus
ENSORLG00015019421	urb1	97	67.937	ENSLBEG00000027208	urb1	98	68.295	Labrus_bergylta
ENSORLG00015019421	urb1	97	58.042	ENSLACG00000017059	URB1	94	58.042	Latimeria_chalumnae
ENSORLG00015019421	urb1	99	52.350	ENSLOCG00000009190	urb1	97	52.350	Lepisosteus_oculatus
ENSORLG00015019421	urb1	97	46.466	ENSLAFG00000010407	URB1	99	41.876	Loxodonta_africana
ENSORLG00015019421	urb1	97	47.207	ENSMFAG00000034391	URB1	92	47.072	Macaca_fascicularis
ENSORLG00015019421	urb1	97	47.182	ENSMMUG00000010295	URB1	95	47.046	Macaca_mulatta
ENSORLG00015019421	urb1	97	46.382	ENSMNEG00000032981	URB1	99	42.720	Macaca_nemestrina
ENSORLG00015019421	urb1	97	47.184	ENSMLEG00000041435	URB1	95	47.049	Mandrillus_leucophaeus
ENSORLG00015019421	urb1	99	74.444	ENSMAMG00000011238	urb1	93	74.444	Mastacembelus_armatus
ENSORLG00015019421	urb1	99	65.111	ENSMZEG00005011862	urb1	99	65.111	Maylandia_zebra
ENSORLG00015019421	urb1	97	59.574	ENSMGAG00000014512	URB1	96	59.574	Meleagris_gallopavo
ENSORLG00015019421	urb1	92	48.645	ENSMAUG00000010516	Urb1	99	48.601	Mesocricetus_auratus
ENSORLG00015019421	urb1	98	46.551	ENSMICG00000016424	URB1	99	42.365	Microcebus_murinus
ENSORLG00015019421	urb1	97	46.304	ENSMOCG00000012613	Urb1	95	46.304	Microtus_ochrogaster
ENSORLG00015019421	urb1	99	50.140	ENSMODG00000021076	URB1	93	50.140	Monodelphis_domestica
ENSORLG00015019421	urb1	99	77.457	ENSMALG00000017411	urb1	96	71.459	Monopterus_albus
ENSORLG00015019421	urb1	97	45.979	MGP_CAROLIEiJ_G0020948	Urb1	99	41.909	Mus_caroli
ENSORLG00015019421	urb1	97	45.979	ENSMUSG00000039929	Urb1	99	41.765	Mus_musculus
ENSORLG00015019421	urb1	96	46.616	MGP_PahariEiJ_G0016653	Urb1	94	46.454	Mus_pahari
ENSORLG00015019421	urb1	97	45.955	MGP_SPRETEiJ_G0021854	Urb1	99	41.897	Mus_spretus
ENSORLG00015019421	urb1	99	50.140	ENSMPUG00000001123	URB1	92	50.140	Mustela_putorius_furo
ENSORLG00015019421	urb1	99	46.049	ENSNGAG00000001905	Urb1	99	46.049	Nannospalax_galili
ENSORLG00015019421	urb1	82	63.924	ENSNBRG00000001049	urb1	99	63.924	Neolamprologus_brichardi
ENSORLG00015019421	urb1	97	44.932	ENSNLEG00000026872	URB1	99	41.382	Nomascus_leucogenys
ENSORLG00015019421	urb1	91	50.600	ENSMEUG00000010828	URB1	89	49.714	Notamacropus_eugenii
ENSORLG00015019421	urb1	98	51.117	ENSOPRG00000013482	URB1	91	51.117	Ochotona_princeps
ENSORLG00015019421	urb1	98	50.000	ENSODEG00000002587	URB1	92	50.000	Octodon_degus
ENSORLG00015019421	urb1	99	73.278	ENSONIG00000005599	urb1	93	73.278	Oreochromis_niloticus
ENSORLG00015019421	urb1	98	46.775	ENSOCUG00000009381	URB1	99	42.870	Oryctolagus_cuniculus
ENSORLG00015019421	urb1	99	98.343	ENSORLG00000003429	urb1	100	91.789	Oryzias_latipes
ENSORLG00015019421	urb1	99	97.790	ENSORLG00020013785	urb1	100	91.353	Oryzias_latipes_hni
ENSORLG00015019421	urb1	80	84.848	ENSOMEG00000002094	urb1	99	84.848	Oryzias_melastigma
ENSORLG00015019421	urb1	98	46.349	ENSOGAG00000017140	URB1	99	42.527	Otolemur_garnettii
ENSORLG00015019421	urb1	87	46.093	ENSOARG00000013679	URB1	90	45.808	Ovis_aries
ENSORLG00015019421	urb1	97	46.521	ENSPPAG00000003423	URB1	99	42.471	Pan_paniscus
ENSORLG00015019421	urb1	99	48.739	ENSPPRG00000023131	URB1	99	42.570	Panthera_pardus
ENSORLG00015019421	urb1	86	48.739	ENSPTIG00000016125	URB1	93	44.689	Panthera_tigris_altaica
ENSORLG00015019421	urb1	97	46.466	ENSPTRG00000013852	URB1	99	42.483	Pan_troglodytes
ENSORLG00015019421	urb1	97	47.207	ENSPANG00000021964	URB1	95	47.049	Papio_anubis
ENSORLG00015019421	urb1	98	53.154	ENSPKIG00000003683	urb1	99	50.788	Paramormyrops_kingsleyae
ENSORLG00015019421	urb1	97	46.141	ENSPEMG00000021205	Urb1	98	42.264	Peromyscus_maniculatus_bairdii
ENSORLG00015019421	urb1	81	31.657	ENSPMAG00000009733	URB1	99	32.027	Petromyzon_marinus
ENSORLG00015019421	urb1	98	50.420	ENSPCIG00000016350	URB1	91	50.420	Phascolarctos_cinereus
ENSORLG00015019421	urb1	96	70.752	ENSPLAG00000004371	urb1	93	70.752	Poecilia_latipinna
ENSORLG00015019421	urb1	99	66.771	ENSPMEG00000006634	urb1	99	64.996	Poecilia_mexicana
ENSORLG00015019421	urb1	99	66.076	ENSPREG00000013453	urb1	99	64.362	Poecilia_reticulata
ENSORLG00015019421	urb1	97	46.363	ENSPPYG00000011359	URB1	95	46.334	Pongo_abelii
ENSORLG00015019421	urb1	97	47.440	ENSPCAG00000007430	URB1	91	47.440	Procavia_capensis
ENSORLG00015019421	urb1	98	46.598	ENSPCOG00000022695	URB1	99	42.726	Propithecus_coquereli
ENSORLG00015019421	urb1	99	45.938	ENSPVAG00000000889	URB1	95	46.183	Pteropus_vampyrus
ENSORLG00015019421	urb1	99	64.424	ENSPNYG00000010589	urb1	99	64.424	Pundamilia_nyererei
ENSORLG00015019421	urb1	99	58.470	ENSPNAG00000019324	urb1	97	58.470	Pygocentrus_nattereri
ENSORLG00015019421	urb1	97	46.121	ENSRNOG00000002080	Urb1	95	46.121	Rattus_norvegicus
ENSORLG00015019421	urb1	97	46.878	ENSRBIG00000033122	URB1	95	46.724	Rhinopithecus_bieti
ENSORLG00015019421	urb1	97	46.663	ENSRROG00000040237	URB1	99	42.595	Rhinopithecus_roxellana
ENSORLG00015019421	urb1	97	46.255	ENSSBOG00000027672	URB1	95	46.192	Saimiri_boliviensis_boliviensis
ENSORLG00015019421	urb1	98	50.281	ENSSHAG00000005140	URB1	92	50.281	Sarcophilus_harrisii
ENSORLG00015019421	urb1	88	59.780	ENSSFOG00015000339	urb1	99	52.460	Scleropages_formosus
ENSORLG00015019421	urb1	99	74.510	ENSSMAG00000003782	urb1	93	74.510	Scophthalmus_maximus
ENSORLG00015019421	urb1	99	75.766	ENSSDUG00000012313	urb1	93	75.766	Seriola_dumerili
ENSORLG00015019421	urb1	99	76.045	ENSSLDG00000023179	urb1	93	76.045	Seriola_lalandi_dorsalis
ENSORLG00015019421	urb1	99	56.354	ENSSPUG00000012447	URB1	96	56.354	Sphenodon_punctatus
ENSORLG00015019421	urb1	99	76.243	ENSSPAG00000006325	urb1	93	76.243	Stegastes_partitus
ENSORLG00015019421	urb1	99	41.375	ENSSSCG00000032024	URB1	99	45.657	Sus_scrofa
ENSORLG00015019421	urb1	79	45.182	ENSTGUG00000013442	URB1	100	45.594	Taeniopygia_guttata
ENSORLG00015019421	urb1	99	68.245	ENSTRUG00000009372	urb1	99	60.089	Takifugu_rubripes
ENSORLG00015019421	urb1	99	66.852	ENSTNIG00000016277	urb1	94	66.852	Tetraodon_nigroviridis
ENSORLG00015019421	urb1	71	48.521	ENSTBEG00000010044	URB1	67	47.414	Tupaia_belangeri
ENSORLG00015019421	urb1	88	64.583	ENSTTRG00000007712	URB1	86	64.583	Tursiops_truncatus
ENSORLG00015019421	urb1	98	48.459	ENSUAMG00000012231	URB1	99	42.383	Ursus_americanus
ENSORLG00015019421	urb1	83	53.103	ENSUMAG00000017419	URB1	88	53.819	Ursus_maritimus
ENSORLG00015019421	urb1	71	59.200	ENSVPAG00000001164	URB1	67	59.200	Vicugna_pacos
ENSORLG00015019421	urb1	99	50.140	ENSVVUG00000000551	URB1	93	50.140	Vulpes_vulpes
ENSORLG00015019421	urb1	99	56.452	ENSXETG00000009895	urb1	97	56.452	Xenopus_tropicalis
ENSORLG00015019421	urb1	99	64.093	ENSXCOG00000005500	urb1	98	64.093	Xiphophorus_couchianus
ENSORLG00015019421	urb1	99	64.182	ENSXMAG00000007253	urb1	98	64.182	Xiphophorus_maculatus