EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015019575 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 12297 bases
Position: chr8:20161101-20173397
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015018518	zf-CCCH	PF00642.24	4e-22	1	2
ENSORLP00015018518	zf-CCCH	PF00642.24	4e-22	2	2
ENSORLP00015018518	zf-CCHC	PF00098.23	4.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015027228	-	4922	-	ENSORLP00015018518	265 (aa)	-	-

Gene Model

Click here to download ENSORLG00015019575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015019575's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015019575	cpsf4	100	82.900	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSORLG00015019575	cpsf4	67	84.746	ENSAPOG00000004921	cpsf4	100	84.746	Acanthochromis_polyacanthus
ENSORLG00015019575	cpsf4	100	82.900	ENSAMEG00000006252	CPSF4	100	82.900	Ailuropoda_melanoleuca
ENSORLG00015019575	cpsf4	100	83.774	ENSACIG00000009248	cpsf4	100	84.906	Amphilophus_citrinellus
ENSORLG00015019575	cpsf4	100	93.208	ENSAOCG00000019616	cpsf4	100	93.208	Amphiprion_ocellaris
ENSORLG00015019575	cpsf4	100	93.208	ENSAPEG00000011679	cpsf4	100	93.208	Amphiprion_percula
ENSORLG00015019575	cpsf4	100	90.637	ENSATEG00000007010	cpsf4	100	90.637	Anabas_testudineus
ENSORLG00015019575	cpsf4	100	81.413	ENSACAG00000012941	CPSF4	89	81.413	Anolis_carolinensis
ENSORLG00015019575	cpsf4	100	82.900	ENSANAG00000021360	CPSF4	100	82.900	Aotus_nancymaae
ENSORLG00015019575	cpsf4	100	92.075	ENSACLG00000010374	cpsf4	100	92.075	Astatotilapia_calliptera
ENSORLG00015019575	cpsf4	100	83.704	ENSAMXG00000031647	cpsf4	100	83.696	Astyanax_mexicanus
ENSORLG00015019575	cpsf4	100	79.245	ENSBTAG00000002090	CPSF4	100	79.245	Bos_taurus
ENSORLG00015019575	cpsf4	100	82.900	ENSCJAG00000015826	CPSF4	100	82.900	Callithrix_jacchus
ENSORLG00015019575	cpsf4	100	82.900	ENSCAFG00000015036	CPSF4	99	87.273	Canis_familiaris
ENSORLG00015019575	cpsf4	100	78.439	ENSCAFG00020014462	CPSF4	100	78.439	Canis_lupus_dingo
ENSORLG00015019575	cpsf4	100	82.528	ENSCHIG00000014313	CPSF4	100	82.528	Capra_hircus
ENSORLG00015019575	cpsf4	89	74.262	ENSTSYG00000008195	-	99	74.390	Carlito_syrichta
ENSORLG00015019575	cpsf4	100	80.377	ENSTSYG00000005712	-	100	80.377	Carlito_syrichta
ENSORLG00015019575	cpsf4	100	72.932	ENSTSYG00000014604	-	100	72.932	Carlito_syrichta
ENSORLG00015019575	cpsf4	82	82.273	ENSCAPG00000013881	CPSF4	88	81.532	Cavia_aperea
ENSORLG00015019575	cpsf4	100	80.000	ENSCPOG00000001783	CPSF4	100	80.000	Cavia_porcellus
ENSORLG00015019575	cpsf4	100	82.900	ENSCCAG00000028291	CPSF4	100	82.900	Cebus_capucinus
ENSORLG00015019575	cpsf4	100	82.900	ENSCATG00000038440	CPSF4	100	82.900	Cercocebus_atys
ENSORLG00015019575	cpsf4	100	82.900	ENSCLAG00000007050	CPSF4	100	82.900	Chinchilla_lanigera
ENSORLG00015019575	cpsf4	100	82.900	ENSCSAG00000017795	CPSF4	100	82.900	Chlorocebus_sabaeus
ENSORLG00015019575	cpsf4	62	78.788	ENSCPBG00000010269	-	99	78.788	Chrysemys_picta_bellii
ENSORLG00015019575	cpsf4	80	82.407	ENSCPBG00000020869	CPSF4	100	82.407	Chrysemys_picta_bellii
ENSORLG00015019575	cpsf4	97	56.641	ENSCING00000021080	-	97	56.641	Ciona_intestinalis
ENSORLG00015019575	cpsf4	96	54.417	ENSCSAVG00000011469	-	97	54.417	Ciona_savignyi
ENSORLG00015019575	cpsf4	100	82.900	ENSCANG00000019384	CPSF4	100	82.900	Colobus_angolensis_palliatus
ENSORLG00015019575	cpsf4	100	80.000	ENSCGRG00001024184	Cpsf4	100	80.000	Cricetulus_griseus_chok1gshd
ENSORLG00015019575	cpsf4	100	82.900	ENSCGRG00000013892	Cpsf4	100	82.900	Cricetulus_griseus_crigri
ENSORLG00015019575	cpsf4	100	89.434	ENSCSEG00000019055	cpsf4	100	89.434	Cynoglossus_semilaevis
ENSORLG00015019575	cpsf4	100	91.321	ENSCVAG00000016528	cpsf4	100	91.321	Cyprinodon_variegatus
ENSORLG00015019575	cpsf4	100	83.764	ENSDARG00000020217	cpsf4	100	83.764	Danio_rerio
ENSORLG00015019575	cpsf4	100	82.900	ENSDNOG00000006344	CPSF4	100	82.900	Dasypus_novemcinctus
ENSORLG00015019575	cpsf4	80	82.488	ENSDORG00000000742	Cpsf4	100	82.488	Dipodomys_ordii
ENSORLG00015019575	cpsf4	100	53.846	FBgn0015621	Clp	99	53.846	Drosophila_melanogaster
ENSORLG00015019575	cpsf4	71	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSORLG00015019575	cpsf4	99	64.639	ENSEBUG00000012552	cpsf4	98	64.639	Eptatretus_burgeri
ENSORLG00015019575	cpsf4	100	80.000	ENSEASG00005002487	CPSF4	100	80.000	Equus_asinus_asinus
ENSORLG00015019575	cpsf4	100	82.900	ENSECAG00000007525	CPSF4	100	82.900	Equus_caballus
ENSORLG00015019575	cpsf4	63	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSORLG00015019575	cpsf4	100	83.824	ENSELUG00000011481	cpsf4	100	84.191	Esox_lucius
ENSORLG00015019575	cpsf4	100	82.900	ENSFCAG00000015070	CPSF4	100	82.900	Felis_catus
ENSORLG00015019575	cpsf4	62	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSORLG00015019575	cpsf4	100	79.245	ENSFALG00000013799	CPSF4	100	79.245	Ficedula_albicollis
ENSORLG00015019575	cpsf4	90	81.893	ENSFDAG00000014092	CPSF4	100	81.893	Fukomys_damarensis
ENSORLG00015019575	cpsf4	100	91.321	ENSFHEG00000010880	cpsf4	100	91.321	Fundulus_heteroclitus
ENSORLG00015019575	cpsf4	100	81.250	ENSGMOG00000002330	cpsf4	100	81.250	Gadus_morhua
ENSORLG00015019575	cpsf4	99	35.165	ENSGALG00000004441	-	98	35.165	Gallus_gallus
ENSORLG00015019575	cpsf4	100	79.623	ENSGALG00000004714	CPSF4	100	79.623	Gallus_gallus
ENSORLG00015019575	cpsf4	100	91.321	ENSGAFG00000010580	cpsf4	100	91.321	Gambusia_affinis
ENSORLG00015019575	cpsf4	100	85.448	ENSGACG00000007792	cpsf4	100	85.448	Gasterosteus_aculeatus
ENSORLG00015019575	cpsf4	100	82.528	ENSGAGG00000021835	CPSF4	100	82.528	Gopherus_agassizii
ENSORLG00015019575	cpsf4	69	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSORLG00015019575	cpsf4	100	82.900	ENSGGOG00000015131	CPSF4	100	82.900	Gorilla_gorilla
ENSORLG00015019575	cpsf4	100	92.075	ENSHBUG00000013699	cpsf4	100	92.075	Haplochromis_burtoni
ENSORLG00015019575	cpsf4	100	81.919	ENSHGLG00000017150	CPSF4	100	81.919	Heterocephalus_glaber_female
ENSORLG00015019575	cpsf4	87	79.237	ENSHGLG00100009215	-	100	79.237	Heterocephalus_glaber_male
ENSORLG00015019575	cpsf4	67	63.842	ENSHGLG00100017302	-	93	62.437	Heterocephalus_glaber_male
ENSORLG00015019575	cpsf4	100	86.842	ENSHCOG00000004397	cpsf4	100	86.842	Hippocampus_comes
ENSORLG00015019575	cpsf4	100	84.502	ENSIPUG00000017147	cpsf4	100	84.502	Ictalurus_punctatus
ENSORLG00015019575	cpsf4	100	82.900	ENSSTOG00000001688	CPSF4	100	82.900	Ictidomys_tridecemlineatus
ENSORLG00015019575	cpsf4	100	82.900	ENSJJAG00000019426	Cpsf4	100	82.900	Jaculus_jaculus
ENSORLG00015019575	cpsf4	100	90.943	ENSKMAG00000015642	cpsf4	100	90.943	Kryptolebias_marmoratus
ENSORLG00015019575	cpsf4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSORLG00015019575	cpsf4	100	59.774	ENSLACG00000018470	-	100	59.774	Latimeria_chalumnae
ENSORLG00015019575	cpsf4	100	82.528	ENSLOCG00000004814	cpsf4	100	82.528	Lepisosteus_oculatus
ENSORLG00015019575	cpsf4	100	82.528	ENSLAFG00000000159	CPSF4	100	82.528	Loxodonta_africana
ENSORLG00015019575	cpsf4	100	82.900	ENSMFAG00000001462	CPSF4	100	82.900	Macaca_fascicularis
ENSORLG00015019575	cpsf4	100	82.900	ENSMMUG00000019191	CPSF4	100	82.900	Macaca_mulatta
ENSORLG00015019575	cpsf4	100	82.900	ENSMNEG00000032306	CPSF4	100	82.900	Macaca_nemestrina
ENSORLG00015019575	cpsf4	100	82.900	ENSMLEG00000034721	CPSF4	100	82.900	Mandrillus_leucophaeus
ENSORLG00015019575	cpsf4	100	90.602	ENSMAMG00000006244	cpsf4	100	90.602	Mastacembelus_armatus
ENSORLG00015019575	cpsf4	100	92.075	ENSMZEG00005007515	cpsf4	100	92.075	Maylandia_zebra
ENSORLG00015019575	cpsf4	87	77.922	ENSMGAG00000004235	CPSF4	100	77.922	Meleagris_gallopavo
ENSORLG00015019575	cpsf4	100	82.900	ENSMAUG00000021253	Cpsf4	100	82.900	Mesocricetus_auratus
ENSORLG00015019575	cpsf4	100	82.900	ENSMICG00000017429	CPSF4	100	82.900	Microcebus_murinus
ENSORLG00015019575	cpsf4	100	82.900	ENSMOCG00000014901	Cpsf4	100	82.900	Microtus_ochrogaster
ENSORLG00015019575	cpsf4	100	90.226	ENSMMOG00000001813	cpsf4	100	90.226	Mola_mola
ENSORLG00015019575	cpsf4	100	84.015	ENSMODG00000001367	CPSF4	100	84.015	Monodelphis_domestica
ENSORLG00015019575	cpsf4	100	90.226	ENSMALG00000012611	cpsf4	100	90.226	Monopterus_albus
ENSORLG00015019575	cpsf4	100	82.900	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.900	Mus_caroli
ENSORLG00015019575	cpsf4	100	82.900	ENSMUSG00000029625	Cpsf4	100	82.900	Mus_musculus
ENSORLG00015019575	cpsf4	100	82.900	MGP_PahariEiJ_G0024581	Cpsf4	100	82.900	Mus_pahari
ENSORLG00015019575	cpsf4	100	82.900	MGP_SPRETEiJ_G0029013	Cpsf4	100	82.900	Mus_spretus
ENSORLG00015019575	cpsf4	100	82.900	ENSMPUG00000016508	CPSF4	100	82.900	Mustela_putorius_furo
ENSORLG00015019575	cpsf4	87	79.221	ENSMLUG00000010980	CPSF4	100	77.922	Myotis_lucifugus
ENSORLG00015019575	cpsf4	100	82.900	ENSNGAG00000001567	Cpsf4	100	82.900	Nannospalax_galili
ENSORLG00015019575	cpsf4	91	91.701	ENSNBRG00000003943	cpsf4	98	91.701	Neolamprologus_brichardi
ENSORLG00015019575	cpsf4	100	81.579	ENSNLEG00000011074	CPSF4	100	81.579	Nomascus_leucogenys
ENSORLG00015019575	cpsf4	100	84.015	ENSMEUG00000006955	CPSF4	100	84.015	Notamacropus_eugenii
ENSORLG00015019575	cpsf4	100	82.528	ENSOPRG00000013663	CPSF4	100	82.528	Ochotona_princeps
ENSORLG00015019575	cpsf4	100	82.900	ENSODEG00000011181	-	100	82.900	Octodon_degus
ENSORLG00015019575	cpsf4	98	68.966	ENSODEG00000018283	-	91	68.966	Octodon_degus
ENSORLG00015019575	cpsf4	100	63.235	ENSODEG00000009779	-	100	63.235	Octodon_degus
ENSORLG00015019575	cpsf4	100	91.698	ENSONIG00000008495	cpsf4	100	91.698	Oreochromis_niloticus
ENSORLG00015019575	cpsf4	87	82.051	ENSOANG00000007729	CPSF4	100	82.051	Ornithorhynchus_anatinus
ENSORLG00015019575	cpsf4	100	52.518	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSORLG00015019575	cpsf4	100	82.528	ENSOCUG00000002437	CPSF4	70	82.528	Oryctolagus_cuniculus
ENSORLG00015019575	cpsf4	100	99.623	ENSORLG00000022798	cpsf4	100	99.623	Oryzias_latipes
ENSORLG00015019575	cpsf4	100	99.623	ENSORLG00020008548	cpsf4	100	99.623	Oryzias_latipes_hni
ENSORLG00015019575	cpsf4	100	96.981	ENSOMEG00000005176	cpsf4	100	96.981	Oryzias_melastigma
ENSORLG00015019575	cpsf4	100	82.900	ENSOGAG00000010884	CPSF4	100	82.900	Otolemur_garnettii
ENSORLG00015019575	cpsf4	100	72.527	ENSOARG00000018668	CPSF4	100	72.527	Ovis_aries
ENSORLG00015019575	cpsf4	100	82.900	ENSPPAG00000043355	CPSF4	100	82.900	Pan_paniscus
ENSORLG00015019575	cpsf4	100	82.900	ENSPPRG00000003134	CPSF4	100	82.900	Panthera_pardus
ENSORLG00015019575	cpsf4	90	82.645	ENSPTIG00000005604	CPSF4	90	82.645	Panthera_tigris_altaica
ENSORLG00015019575	cpsf4	100	82.900	ENSPTRG00000019453	CPSF4	100	82.900	Pan_troglodytes
ENSORLG00015019575	cpsf4	100	82.900	ENSPANG00000023123	CPSF4	100	82.900	Papio_anubis
ENSORLG00015019575	cpsf4	100	82.117	ENSPKIG00000014278	cpsf4	100	82.117	Paramormyrops_kingsleyae
ENSORLG00015019575	cpsf4	80	81.944	ENSPSIG00000011229	CPSF4	100	81.944	Pelodiscus_sinensis
ENSORLG00015019575	cpsf4	81	57.944	ENSPSIG00000018198	-	100	57.944	Pelodiscus_sinensis
ENSORLG00015019575	cpsf4	100	78.868	ENSPMGG00000017735	cpsf4	100	78.868	Periophthalmus_magnuspinnatus
ENSORLG00015019575	cpsf4	100	82.900	ENSPEMG00000004508	Cpsf4	100	82.900	Peromyscus_maniculatus_bairdii
ENSORLG00015019575	cpsf4	100	84.015	ENSPCIG00000024776	CPSF4	100	84.015	Phascolarctos_cinereus
ENSORLG00015019575	cpsf4	100	91.321	ENSPFOG00000014912	cpsf4	100	91.321	Poecilia_formosa
ENSORLG00015019575	cpsf4	100	83.774	ENSPLAG00000009599	cpsf4	100	83.774	Poecilia_latipinna
ENSORLG00015019575	cpsf4	100	91.321	ENSPMEG00000009790	cpsf4	100	91.321	Poecilia_mexicana
ENSORLG00015019575	cpsf4	100	90.566	ENSPREG00000018166	cpsf4	100	90.566	Poecilia_reticulata
ENSORLG00015019575	cpsf4	87	81.624	ENSPPYG00000017378	CPSF4	100	81.624	Pongo_abelii
ENSORLG00015019575	cpsf4	100	82.528	ENSPCAG00000001892	CPSF4	100	82.528	Procavia_capensis
ENSORLG00015019575	cpsf4	100	82.900	ENSPCOG00000012771	CPSF4	100	82.900	Propithecus_coquereli
ENSORLG00015019575	cpsf4	100	78.067	ENSPVAG00000007531	CPSF4	100	78.067	Pteropus_vampyrus
ENSORLG00015019575	cpsf4	100	92.075	ENSPNYG00000018559	cpsf4	100	92.075	Pundamilia_nyererei
ENSORLG00015019575	cpsf4	100	84.815	ENSPNAG00000003736	cpsf4	100	84.815	Pygocentrus_nattereri
ENSORLG00015019575	cpsf4	100	80.755	ENSRNOG00000000985	Cpsf4	100	79.623	Rattus_norvegicus
ENSORLG00015019575	cpsf4	87	82.051	ENSRBIG00000033886	CPSF4	100	82.051	Rhinopithecus_bieti
ENSORLG00015019575	cpsf4	100	80.000	ENSRROG00000040431	CPSF4	100	80.000	Rhinopithecus_roxellana
ENSORLG00015019575	cpsf4	100	82.900	ENSSBOG00000020493	CPSF4	100	82.900	Saimiri_boliviensis_boliviensis
ENSORLG00015019575	cpsf4	100	84.015	ENSSHAG00000011533	CPSF4	100	84.015	Sarcophilus_harrisii
ENSORLG00015019575	cpsf4	100	81.884	ENSSFOG00015007883	cpsf4	100	81.884	Scleropages_formosus
ENSORLG00015019575	cpsf4	100	82.331	ENSSMAG00000006374	cpsf4	100	82.331	Scophthalmus_maximus
ENSORLG00015019575	cpsf4	100	90.977	ENSSDUG00000018887	cpsf4	100	90.977	Seriola_dumerili
ENSORLG00015019575	cpsf4	100	90.977	ENSSLDG00000019078	cpsf4	100	90.977	Seriola_lalandi_dorsalis
ENSORLG00015019575	cpsf4	87	82.051	ENSSARG00000012416	CPSF4	100	82.051	Sorex_araneus
ENSORLG00015019575	cpsf4	96	60.236	ENSSPUG00000014803	-	97	60.236	Sphenodon_punctatus
ENSORLG00015019575	cpsf4	100	82.593	ENSSPUG00000003549	CPSF4	100	82.593	Sphenodon_punctatus
ENSORLG00015019575	cpsf4	100	84.906	ENSSPAG00000006174	cpsf4	100	84.906	Stegastes_partitus
ENSORLG00015019575	cpsf4	100	80.000	ENSSSCG00000026896	CPSF4	100	80.000	Sus_scrofa
ENSORLG00015019575	cpsf4	100	78.277	ENSTGUG00000007552	CPSF4	100	78.277	Taeniopygia_guttata
ENSORLG00015019575	cpsf4	100	87.594	ENSTRUG00000024220	cpsf4	100	87.594	Takifugu_rubripes
ENSORLG00015019575	cpsf4	100	87.925	ENSTNIG00000006265	cpsf4	100	88.679	Tetraodon_nigroviridis
ENSORLG00015019575	cpsf4	87	73.077	ENSTBEG00000011406	CPSF4	100	73.077	Tupaia_belangeri
ENSORLG00015019575	cpsf4	100	72.491	ENSTTRG00000003007	CPSF4	100	72.491	Tursiops_truncatus
ENSORLG00015019575	cpsf4	92	75.309	ENSUAMG00000008051	CPSF4	85	78.189	Ursus_americanus
ENSORLG00015019575	cpsf4	100	80.755	ENSUMAG00000009474	CPSF4	100	79.623	Ursus_maritimus
ENSORLG00015019575	cpsf4	100	77.736	ENSVVUG00000008824	CPSF4	100	80.000	Vulpes_vulpes
ENSORLG00015019575	cpsf4	100	78.495	ENSXETG00000009892	cpsf4	100	78.495	Xenopus_tropicalis
ENSORLG00015019575	cpsf4	99	58.993	ENSXETG00000004641	cpsf4l	99	58.993	Xenopus_tropicalis
ENSORLG00015019575	cpsf4	100	91.698	ENSXCOG00000016040	cpsf4	100	91.698	Xiphophorus_couchianus
ENSORLG00015019575	cpsf4	100	91.321	ENSXMAG00000024670	cpsf4	100	91.321	Xiphophorus_maculatus