EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015020044 (Gene tree)
Gene ID: -
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 2990 bases
Position: chr4:8898036-8901025
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015018951	LSM	PF01423.22	1.2e-20	1	1
ENSORLP00015018962	LSM	PF01423.22	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015027807	-	1257	-	ENSORLP00015018962	121 (aa)	-	-
ENSORLT00015027942	-	1134	-	ENSORLP00015018951	108 (aa)	-	-

Gene Model

Click here to download ENSORLG00015020044's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015020044's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015020044	lsm7	66	38.028	ENSORLG00015015013	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015020044	lsm7	94	95.050	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSORLG00015020044	lsm7	88	98.947	ENSAPOG00000015573	lsm7	82	98.947	Acanthochromis_polyacanthus
ENSORLG00015020044	lsm7	94	93.137	ENSAMEG00000005484	LSM7	100	94.175	Ailuropoda_melanoleuca
ENSORLG00015020044	lsm7	90	98.969	ENSACIG00000006498	lsm7	77	98.969	Amphilophus_citrinellus
ENSORLG00015020044	lsm7	94	100.000	ENSAOCG00000001077	lsm7	93	100.000	Amphiprion_ocellaris
ENSORLG00015020044	lsm7	94	100.000	ENSAPEG00000000694	lsm7	100	98.058	Amphiprion_percula
ENSORLG00015020044	lsm7	94	100.000	ENSAPEG00000024447	lsm7	93	100.000	Amphiprion_percula
ENSORLG00015020044	lsm7	94	100.000	ENSATEG00000008557	lsm7	100	98.058	Anabas_testudineus
ENSORLG00015020044	lsm7	94	86.139	ENSANAG00000022222	-	100	84.466	Aotus_nancymaae
ENSORLG00015020044	lsm7	94	95.050	ENSANAG00000037196	-	100	93.204	Aotus_nancymaae
ENSORLG00015020044	lsm7	94	99.010	ENSACLG00000021021	lsm7	100	97.087	Astatotilapia_calliptera
ENSORLG00015020044	lsm7	94	98.020	ENSAMXG00000037622	lsm7	100	96.117	Astyanax_mexicanus
ENSORLG00015020044	lsm7	94	95.050	ENSBTAG00000004521	LSM7	100	93.204	Bos_taurus
ENSORLG00015020044	lsm7	95	57.282	WBGene00003081	lsm-7	99	57.282	Caenorhabditis_elegans
ENSORLG00015020044	lsm7	64	76.812	ENSCJAG00000039713	-	68	91.071	Callithrix_jacchus
ENSORLG00015020044	lsm7	94	93.137	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSORLG00015020044	lsm7	94	93.137	ENSCAFG00020018168	LSM7	76	92.233	Canis_lupus_dingo
ENSORLG00015020044	lsm7	94	94.118	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSORLG00015020044	lsm7	66	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSORLG00015020044	lsm7	94	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSORLG00015020044	lsm7	94	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSORLG00015020044	lsm7	94	95.050	ENSCATG00000023543	LSM7	100	93.204	Cercocebus_atys
ENSORLG00015020044	lsm7	94	95.050	ENSCLAG00000011635	LSM7	100	93.204	Chinchilla_lanigera
ENSORLG00015020044	lsm7	94	95.050	ENSCSAG00000011599	LSM7	100	93.204	Chlorocebus_sabaeus
ENSORLG00015020044	lsm7	67	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSORLG00015020044	lsm7	89	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSORLG00015020044	lsm7	94	95.050	ENSCANG00000035525	LSM7	100	93.204	Colobus_angolensis_palliatus
ENSORLG00015020044	lsm7	83	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSORLG00015020044	lsm7	94	94.059	ENSCGRG00001000807	-	100	92.233	Cricetulus_griseus_chok1gshd
ENSORLG00015020044	lsm7	83	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSORLG00015020044	lsm7	100	87.963	ENSCGRG00000014355	-	98	94.118	Cricetulus_griseus_crigri
ENSORLG00015020044	lsm7	94	100.000	ENSCSEG00000014900	lsm7	86	100.000	Cynoglossus_semilaevis
ENSORLG00015020044	lsm7	95	98.058	ENSCVAG00000021091	lsm7	95	98.058	Cyprinodon_variegatus
ENSORLG00015020044	lsm7	94	97.030	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSORLG00015020044	lsm7	94	93.069	ENSDORG00000024460	Lsm7	99	93.069	Dipodomys_ordii
ENSORLG00015020044	lsm7	90	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSORLG00015020044	lsm7	94	91.176	ENSETEG00000012788	LSM7	100	92.157	Echinops_telfairi
ENSORLG00015020044	lsm7	77	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSORLG00015020044	lsm7	94	83.333	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSORLG00015020044	lsm7	94	91.089	ENSECAG00000001440	LSM7	65	91.089	Equus_caballus
ENSORLG00015020044	lsm7	94	94.059	ENSFCAG00000003445	LSM7	100	92.233	Felis_catus
ENSORLG00015020044	lsm7	94	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSORLG00015020044	lsm7	89	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSORLG00015020044	lsm7	95	98.058	ENSFHEG00000006349	lsm7	92	98.058	Fundulus_heteroclitus
ENSORLG00015020044	lsm7	94	97.059	ENSGMOG00000013320	lsm7	100	98.058	Gadus_morhua
ENSORLG00015020044	lsm7	94	99.010	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSORLG00015020044	lsm7	94	98.039	ENSGACG00000010390	lsm7	100	98.058	Gasterosteus_aculeatus
ENSORLG00015020044	lsm7	94	95.050	ENSGGOG00000010172	LSM7	100	93.204	Gorilla_gorilla
ENSORLG00015020044	lsm7	94	99.010	ENSHBUG00000004616	lsm7	100	97.087	Haplochromis_burtoni
ENSORLG00015020044	lsm7	94	95.050	ENSHGLG00000010587	LSM7	100	93.204	Heterocephalus_glaber_female
ENSORLG00015020044	lsm7	94	95.050	ENSHGLG00100000852	LSM7	100	93.204	Heterocephalus_glaber_male
ENSORLG00015020044	lsm7	94	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSORLG00015020044	lsm7	94	96.040	ENSIPUG00000024724	lsm7	100	94.175	Ictalurus_punctatus
ENSORLG00015020044	lsm7	94	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSORLG00015020044	lsm7	93	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSORLG00015020044	lsm7	94	99.010	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSORLG00015020044	lsm7	94	100.000	ENSLBEG00000005203	lsm7	100	98.058	Labrus_bergylta
ENSORLG00015020044	lsm7	86	95.699	ENSLACG00000015700	LSM7	100	95.146	Latimeria_chalumnae
ENSORLG00015020044	lsm7	94	96.078	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSORLG00015020044	lsm7	95	94.175	ENSLAFG00000029302	LSM7	100	94.175	Loxodonta_africana
ENSORLG00015020044	lsm7	94	95.050	ENSMFAG00000044572	LSM7	100	93.204	Macaca_fascicularis
ENSORLG00015020044	lsm7	94	95.050	ENSMMUG00000000452	LSM7	99	95.050	Macaca_mulatta
ENSORLG00015020044	lsm7	94	95.050	ENSMNEG00000004393	LSM7	100	93.204	Macaca_nemestrina
ENSORLG00015020044	lsm7	94	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSORLG00015020044	lsm7	94	99.010	ENSMAMG00000005410	lsm7	100	97.087	Mastacembelus_armatus
ENSORLG00015020044	lsm7	94	99.010	ENSMZEG00005028055	lsm7	100	97.087	Maylandia_zebra
ENSORLG00015020044	lsm7	94	97.030	ENSMGAG00000000750	LSM7	89	95.146	Meleagris_gallopavo
ENSORLG00015020044	lsm7	94	94.059	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSORLG00015020044	lsm7	94	95.050	ENSMICG00000028619	-	100	93.204	Microcebus_murinus
ENSORLG00015020044	lsm7	94	95.050	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSORLG00015020044	lsm7	94	94.059	ENSMOCG00000016925	Lsm7	100	92.233	Microtus_ochrogaster
ENSORLG00015020044	lsm7	94	100.000	ENSMMOG00000019645	lsm7	98	98.058	Mola_mola
ENSORLG00015020044	lsm7	94	96.040	ENSMODG00000004722	LSM7	100	94.175	Monodelphis_domestica
ENSORLG00015020044	lsm7	94	99.010	ENSMALG00000014511	lsm7	92	86.555	Monopterus_albus
ENSORLG00015020044	lsm7	93	94.000	MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	Mus_caroli
ENSORLG00015020044	lsm7	93	94.000	ENSMUSG00000035215	Lsm7	99	92.157	Mus_musculus
ENSORLG00015020044	lsm7	93	94.000	MGP_PahariEiJ_G0031020	Lsm7	99	92.157	Mus_pahari
ENSORLG00015020044	lsm7	93	94.000	MGP_SPRETEiJ_G0016425	Lsm7	99	92.157	Mus_spretus
ENSORLG00015020044	lsm7	93	89.000	ENSMLUG00000024002	-	94	87.255	Myotis_lucifugus
ENSORLG00015020044	lsm7	94	93.137	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSORLG00015020044	lsm7	94	93.069	ENSNGAG00000021637	Lsm7	100	91.262	Nannospalax_galili
ENSORLG00015020044	lsm7	95	97.087	ENSNBRG00000015770	lsm7	91	97.143	Neolamprologus_brichardi
ENSORLG00015020044	lsm7	94	99.010	ENSNBRG00000001237	-	82	98.058	Neolamprologus_brichardi
ENSORLG00015020044	lsm7	94	95.050	ENSNLEG00000002265	LSM7	100	93.204	Nomascus_leucogenys
ENSORLG00015020044	lsm7	94	88.119	ENSODEG00000018769	-	100	86.408	Octodon_degus
ENSORLG00015020044	lsm7	94	75.248	ENSODEG00000008190	-	100	73.786	Octodon_degus
ENSORLG00015020044	lsm7	94	95.050	ENSODEG00000013590	-	100	93.204	Octodon_degus
ENSORLG00015020044	lsm7	94	99.010	ENSONIG00000001801	lsm7	100	90.517	Oreochromis_niloticus
ENSORLG00015020044	lsm7	99	96.296	ENSORLG00000023951	lsm7	100	98.058	Oryzias_latipes
ENSORLG00015020044	lsm7	99	99.167	ENSORLG00020022226	lsm7	100	99.167	Oryzias_latipes_hni
ENSORLG00015020044	lsm7	95	99.029	ENSOMEG00000012806	lsm7	100	98.058	Oryzias_melastigma
ENSORLG00015020044	lsm7	94	83.168	ENSOGAG00000024373	-	100	81.553	Otolemur_garnettii
ENSORLG00015020044	lsm7	94	92.157	ENSOGAG00000000144	-	100	93.137	Otolemur_garnettii
ENSORLG00015020044	lsm7	94	94.118	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSORLG00015020044	lsm7	94	95.050	ENSPPAG00000026500	LSM7	100	93.204	Pan_paniscus
ENSORLG00015020044	lsm7	94	94.059	ENSPPRG00000008624	LSM7	100	92.233	Panthera_pardus
ENSORLG00015020044	lsm7	94	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSORLG00015020044	lsm7	94	95.050	ENSPTRG00000010233	LSM7	100	93.204	Pan_troglodytes
ENSORLG00015020044	lsm7	94	95.050	ENSPANG00000020668	LSM7	100	93.204	Papio_anubis
ENSORLG00015020044	lsm7	95	97.087	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSORLG00015020044	lsm7	94	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSORLG00015020044	lsm7	94	100.000	ENSPMGG00000006498	lsm7	100	98.058	Periophthalmus_magnuspinnatus
ENSORLG00015020044	lsm7	94	96.040	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSORLG00015020044	lsm7	94	97.059	ENSPFOG00000012467	lsm7	91	98.058	Poecilia_formosa
ENSORLG00015020044	lsm7	99	93.458	ENSPLAG00000000252	lsm7	96	96.154	Poecilia_latipinna
ENSORLG00015020044	lsm7	99	93.458	ENSPMEG00000000587	lsm7	96	96.154	Poecilia_mexicana
ENSORLG00015020044	lsm7	75	76.829	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSORLG00015020044	lsm7	94	74.257	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSORLG00015020044	lsm7	94	95.050	ENSPCOG00000017177	LSM7	99	95.050	Propithecus_coquereli
ENSORLG00015020044	lsm7	94	99.010	ENSPNYG00000006938	lsm7	100	97.087	Pundamilia_nyererei
ENSORLG00015020044	lsm7	94	98.020	ENSPNAG00000010141	lsm7	99	98.020	Pygocentrus_nattereri
ENSORLG00015020044	lsm7	93	95.000	ENSRNOG00000019552	Lsm7	99	93.137	Rattus_norvegicus
ENSORLG00015020044	lsm7	94	95.050	ENSRBIG00000035978	LSM7	100	93.204	Rhinopithecus_bieti
ENSORLG00015020044	lsm7	94	95.050	ENSRROG00000034044	LSM7	100	93.204	Rhinopithecus_roxellana
ENSORLG00015020044	lsm7	80	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSORLG00015020044	lsm7	94	95.050	ENSSBOG00000034899	LSM7	100	93.204	Saimiri_boliviensis_boliviensis
ENSORLG00015020044	lsm7	94	96.040	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSORLG00015020044	lsm7	94	100.000	ENSSMAG00000004195	lsm7	95	98.077	Scophthalmus_maximus
ENSORLG00015020044	lsm7	94	100.000	ENSSDUG00000001863	lsm7	100	98.058	Seriola_dumerili
ENSORLG00015020044	lsm7	94	100.000	ENSSLDG00000016339	lsm7	100	98.058	Seriola_lalandi_dorsalis
ENSORLG00015020044	lsm7	94	100.000	ENSSPAG00000015221	lsm7	100	98.058	Stegastes_partitus
ENSORLG00015020044	lsm7	94	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSORLG00015020044	lsm7	94	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSORLG00015020044	lsm7	94	98.020	ENSTRUG00000022913	lsm7	100	96.117	Takifugu_rubripes
ENSORLG00015020044	lsm7	94	98.020	ENSTNIG00000015525	lsm7	100	96.117	Tetraodon_nigroviridis
ENSORLG00015020044	lsm7	65	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSORLG00015020044	lsm7	94	93.137	ENSUAMG00000000912	LSM7	88	92.381	Ursus_americanus
ENSORLG00015020044	lsm7	100	89.815	ENSUMAG00000006556	LSM7	84	90.654	Ursus_maritimus
ENSORLG00015020044	lsm7	66	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSORLG00015020044	lsm7	94	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSORLG00015020044	lsm7	94	99.010	ENSXCOG00000002572	lsm7	99	99.010	Xiphophorus_couchianus
ENSORLG00015020044	lsm7	94	99.010	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus