EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015020454 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: -
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 15726 bases
Position: chr14:9335058-9350783
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015034447	EST1	PF10374.9	5.5e-14	1	1
ENSORLP00015034447	EST1_DNA_bind	PF10373.9	6.6e-57	1	1
ENSORLP00015034447	PIN_4	PF13638.6	1.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015035540	-	8547	-	ENSORLP00015034447	1640 (aa)	-	-

Gene Model

Click here to download ENSORLG00015020454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015020454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015020454	smg6	75	54.115	ENSG00000070366	SMG6	100	56.727	Homo_sapiens
ENSORLG00015020454	smg6	100	70.848	ENSAPOG00000019448	smg6	100	71.002	Acanthochromis_polyacanthus
ENSORLG00015020454	smg6	85	54.945	ENSAMEG00000007632	SMG6	94	54.295	Ailuropoda_melanoleuca
ENSORLG00015020454	smg6	93	68.689	ENSACIG00000012997	smg6	100	68.407	Amphilophus_citrinellus
ENSORLG00015020454	smg6	100	71.266	ENSAOCG00000002630	smg6	100	71.480	Amphiprion_ocellaris
ENSORLG00015020454	smg6	100	70.848	ENSAPEG00000019101	smg6	100	71.062	Amphiprion_percula
ENSORLG00015020454	smg6	100	68.750	ENSATEG00000006483	smg6	100	68.512	Anabas_testudineus
ENSORLG00015020454	smg6	62	49.762	ENSACAG00000011783	SMG6	88	47.220	Anolis_carolinensis
ENSORLG00015020454	smg6	79	53.049	ENSANAG00000035760	SMG6	89	51.912	Aotus_nancymaae
ENSORLG00015020454	smg6	100	68.667	ENSACLG00000005288	smg6	100	69.216	Astatotilapia_calliptera
ENSORLG00015020454	smg6	76	64.850	ENSAMXG00000017326	smg6	97	64.973	Astyanax_mexicanus
ENSORLG00015020454	smg6	75	54.609	ENSBTAG00000000267	SMG6	84	54.275	Bos_taurus
ENSORLG00015020454	smg6	74	54.346	ENSCJAG00000001820	SMG6	87	52.434	Callithrix_jacchus
ENSORLG00015020454	smg6	74	54.760	ENSCAFG00000019260	SMG6	83	54.173	Canis_familiaris
ENSORLG00015020454	smg6	74	54.760	ENSCAFG00020009770	SMG6	83	54.173	Canis_lupus_dingo
ENSORLG00015020454	smg6	75	54.766	ENSCHIG00000021998	SMG6	84	54.353	Capra_hircus
ENSORLG00015020454	smg6	74	54.474	ENSTSYG00000003406	SMG6	100	56.182	Carlito_syrichta
ENSORLG00015020454	smg6	74	45.383	ENSCAPG00000016197	SMG6	81	50.340	Cavia_aperea
ENSORLG00015020454	smg6	74	54.288	ENSCPOG00000014878	SMG6	83	59.330	Cavia_porcellus
ENSORLG00015020454	smg6	79	52.381	ENSCCAG00000035801	SMG6	89	51.765	Cebus_capucinus
ENSORLG00015020454	smg6	74	54.510	ENSCATG00000031956	SMG6	83	54.367	Cercocebus_atys
ENSORLG00015020454	smg6	78	53.418	ENSCLAG00000006748	SMG6	89	52.928	Chinchilla_lanigera
ENSORLG00015020454	smg6	74	54.745	ENSCSAG00000013800	SMG6	83	54.524	Chlorocebus_sabaeus
ENSORLG00015020454	smg6	76	53.282	ENSCPBG00000020369	SMG6	85	52.995	Chrysemys_picta_bellii
ENSORLG00015020454	smg6	74	54.510	ENSCANG00000031764	SMG6	100	57.091	Colobus_angolensis_palliatus
ENSORLG00015020454	smg6	74	49.961	ENSCGRG00000007782	Smg6	90	47.832	Cricetulus_griseus_crigri
ENSORLG00015020454	smg6	100	63.435	ENSCSEG00000012757	smg6	100	63.734	Cynoglossus_semilaevis
ENSORLG00015020454	smg6	100	65.394	ENSCVAG00000012789	smg6	100	65.173	Cyprinodon_variegatus
ENSORLG00015020454	smg6	100	52.986	ENSDARG00000100481	smg6	100	52.656	Danio_rerio
ENSORLG00015020454	smg6	86	54.310	ENSDNOG00000048283	SMG6	95	53.816	Dasypus_novemcinctus
ENSORLG00015020454	smg6	74	50.938	ENSDORG00000016614	Smg6	83	58.852	Dipodomys_ordii
ENSORLG00015020454	smg6	62	87.500	ENSETEG00000016790	SMG6	70	87.500	Echinops_telfairi
ENSORLG00015020454	smg6	60	44.598	ENSEBUG00000005059	smg6	64	43.733	Eptatretus_burgeri
ENSORLG00015020454	smg6	74	54.917	ENSEASG00005009318	SMG6	83	54.186	Equus_asinus_asinus
ENSORLG00015020454	smg6	74	54.839	ENSECAG00000006519	SMG6	83	54.107	Equus_caballus
ENSORLG00015020454	smg6	99	46.535	ENSEEUG00000003493	SMG6	96	55.782	Erinaceus_europaeus
ENSORLG00015020454	smg6	94	61.555	ENSELUG00000005934	smg6	93	68.022	Esox_lucius
ENSORLG00015020454	smg6	74	55.059	ENSFCAG00000028817	SMG6	83	54.331	Felis_catus
ENSORLG00015020454	smg6	77	52.990	ENSFALG00000006538	SMG6	88	53.166	Ficedula_albicollis
ENSORLG00015020454	smg6	74	54.781	ENSFDAG00000015106	SMG6	82	58.852	Fukomys_damarensis
ENSORLG00015020454	smg6	100	67.651	ENSFHEG00000013282	smg6	100	66.988	Fundulus_heteroclitus
ENSORLG00015020454	smg6	88	53.612	ENSGALG00000003108	SMG6	97	53.612	Gallus_gallus
ENSORLG00015020454	smg6	100	67.509	ENSGAFG00000000379	smg6	100	66.907	Gambusia_affinis
ENSORLG00015020454	smg6	78	73.569	ENSGACG00000020521	smg6	98	73.490	Gasterosteus_aculeatus
ENSORLG00015020454	smg6	77	51.620	ENSGAGG00000025617	SMG6	89	51.278	Gopherus_agassizii
ENSORLG00015020454	smg6	74	54.581	ENSGGOG00000017156	SMG6	83	54.088	Gorilla_gorilla
ENSORLG00015020454	smg6	100	68.607	ENSHBUG00000021311	smg6	100	67.988	Haplochromis_burtoni
ENSORLG00015020454	smg6	74	54.510	ENSHGLG00000012882	SMG6	82	59.330	Heterocephalus_glaber_female
ENSORLG00015020454	smg6	74	54.588	ENSHGLG00100017815	SMG6	82	59.330	Heterocephalus_glaber_male
ENSORLG00015020454	smg6	65	67.996	ENSHCOG00000008761	smg6	83	68.085	Hippocampus_comes
ENSORLG00015020454	smg6	100	51.405	ENSIPUG00000012493	smg6	100	50.644	Ictalurus_punctatus
ENSORLG00015020454	smg6	74	54.389	ENSSTOG00000028127	SMG6	83	58.852	Ictidomys_tridecemlineatus
ENSORLG00015020454	smg6	58	50.399	ENSJJAG00000015367	Smg6	79	48.882	Jaculus_jaculus
ENSORLG00015020454	smg6	100	67.988	ENSKMAG00000000279	smg6	100	67.568	Kryptolebias_marmoratus
ENSORLG00015020454	smg6	100	67.183	ENSLBEG00000002184	smg6	100	66.409	Labrus_bergylta
ENSORLG00015020454	smg6	74	54.232	ENSLAFG00000001261	SMG6	83	53.737	Loxodonta_africana
ENSORLG00015020454	smg6	74	54.745	ENSMFAG00000003394	SMG6	83	54.603	Macaca_fascicularis
ENSORLG00015020454	smg6	74	54.667	ENSMMUG00000023161	SMG6	83	54.524	Macaca_mulatta
ENSORLG00015020454	smg6	74	52.830	ENSMNEG00000044592	SMG6	83	52.681	Macaca_nemestrina
ENSORLG00015020454	smg6	70	58.844	ENSMLEG00000029353	SMG6	84	58.144	Mandrillus_leucophaeus
ENSORLG00015020454	smg6	100	68.660	ENSMAMG00000020119	smg6	100	69.375	Mastacembelus_armatus
ENSORLG00015020454	smg6	100	68.607	ENSMZEG00005024736	smg6	100	68.048	Maylandia_zebra
ENSORLG00015020454	smg6	53	52.360	ENSMGAG00000005401	-	81	51.803	Meleagris_gallopavo
ENSORLG00015020454	smg6	74	55.016	ENSMICG00000012913	SMG6	83	54.445	Microcebus_murinus
ENSORLG00015020454	smg6	100	63.527	ENSMMOG00000010883	smg6	100	62.261	Mola_mola
ENSORLG00015020454	smg6	92	53.544	ENSMODG00000010622	SMG6	100	52.711	Monodelphis_domestica
ENSORLG00015020454	smg6	100	68.076	ENSMALG00000001106	smg6	100	67.601	Monopterus_albus
ENSORLG00015020454	smg6	74	53.997	MGP_CAROLIEiJ_G0016729	Smg6	95	65.318	Mus_caroli
ENSORLG00015020454	smg6	74	54.033	ENSMUSG00000038290	Smg6	95	65.318	Mus_musculus
ENSORLG00015020454	smg6	74	53.260	MGP_PahariEiJ_G0017866	Smg6	92	66.767	Mus_pahari
ENSORLG00015020454	smg6	74	53.955	MGP_SPRETEiJ_G0017572	Smg6	95	65.029	Mus_spretus
ENSORLG00015020454	smg6	74	54.980	ENSMPUG00000013046	SMG6	83	54.252	Mustela_putorius_furo
ENSORLG00015020454	smg6	74	54.803	ENSMLUG00000005739	SMG6	83	54.186	Myotis_lucifugus
ENSORLG00015020454	smg6	75	53.666	ENSNGAG00000007287	Smg6	83	58.373	Nannospalax_galili
ENSORLG00015020454	smg6	98	66.667	ENSNBRG00000009511	smg6	99	68.106	Neolamprologus_brichardi
ENSORLG00015020454	smg6	74	54.503	ENSNLEG00000017171	SMG6	100	56.727	Nomascus_leucogenys
ENSORLG00015020454	smg6	79	52.151	ENSMEUG00000015804	SMG6	91	51.634	Notamacropus_eugenii
ENSORLG00015020454	smg6	51	59.585	ENSOPRG00000000579	SMG6	83	58.586	Ochotona_princeps
ENSORLG00015020454	smg6	78	47.787	ENSODEG00000008038	SMG6	87	46.891	Octodon_degus
ENSORLG00015020454	smg6	100	69.148	ENSONIG00000005594	smg6	100	72.859	Oreochromis_niloticus
ENSORLG00015020454	smg6	74	54.973	ENSOCUG00000013018	SMG6	83	54.403	Oryctolagus_cuniculus
ENSORLG00015020454	smg6	100	98.781	ENSORLG00000003317	smg6	100	98.781	Oryzias_latipes
ENSORLG00015020454	smg6	100	98.659	ENSORLG00020015343	smg6	100	98.659	Oryzias_latipes_hni
ENSORLG00015020454	smg6	100	89.085	ENSOMEG00000010838	smg6	100	90.183	Oryzias_melastigma
ENSORLG00015020454	smg6	74	54.667	ENSOGAG00000004483	SMG6	83	54.173	Otolemur_garnettii
ENSORLG00015020454	smg6	75	54.695	ENSOARG00000015076	SMG6	86	54.353	Ovis_aries
ENSORLG00015020454	smg6	85	54.353	ENSPPAG00000043296	SMG6	94	53.931	Pan_paniscus
ENSORLG00015020454	smg6	74	54.988	ENSPPRG00000014581	SMG6	83	54.374	Panthera_pardus
ENSORLG00015020454	smg6	74	54.988	ENSPTIG00000008925	SMG6	100	56.727	Panthera_tigris_altaica
ENSORLG00015020454	smg6	74	54.510	ENSPTRG00000008544	SMG6	100	56.727	Pan_troglodytes
ENSORLG00015020454	smg6	74	54.588	ENSPANG00000024588	SMG6	83	54.445	Papio_anubis
ENSORLG00015020454	smg6	68	52.035	ENSPSIG00000006660	SMG6	81	51.565	Pelodiscus_sinensis
ENSORLG00015020454	smg6	94	75.712	ENSPMGG00000000844	smg6	99	73.585	Periophthalmus_magnuspinnatus
ENSORLG00015020454	smg6	78	53.104	ENSPEMG00000020707	Smg6	84	57.895	Peromyscus_maniculatus_bairdii
ENSORLG00015020454	smg6	100	68.138	ENSPFOG00000012035	smg6	99	71.739	Poecilia_formosa
ENSORLG00015020454	smg6	100	68.077	ENSPLAG00000017660	smg6	100	67.089	Poecilia_latipinna
ENSORLG00015020454	smg6	100	68.077	ENSPMEG00000000258	smg6	100	67.089	Poecilia_mexicana
ENSORLG00015020454	smg6	100	67.709	ENSPREG00000010066	smg6	100	67.208	Poecilia_reticulata
ENSORLG00015020454	smg6	74	50.429	ENSPPYG00000007790	SMG6	83	50.000	Pongo_abelii
ENSORLG00015020454	smg6	71	58.145	ENSPCAG00000000552	SMG6	79	57.240	Procavia_capensis
ENSORLG00015020454	smg6	74	54.894	ENSPCOG00000020925	SMG6	83	54.324	Propithecus_coquereli
ENSORLG00015020454	smg6	71	61.125	ENSPVAG00000002159	SMG6	69	60.870	Pteropus_vampyrus
ENSORLG00015020454	smg6	93	66.904	ENSPNYG00000024151	smg6	99	68.019	Pundamilia_nyererei
ENSORLG00015020454	smg6	100	50.179	ENSPNAG00000015480	smg6	100	49.793	Pygocentrus_nattereri
ENSORLG00015020454	smg6	78	52.438	ENSRNOG00000003041	Smg6	95	65.318	Rattus_norvegicus
ENSORLG00015020454	smg6	74	54.902	ENSRBIG00000024746	SMG6	83	54.760	Rhinopithecus_bieti
ENSORLG00015020454	smg6	74	54.902	ENSRROG00000030423	SMG6	100	57.091	Rhinopithecus_roxellana
ENSORLG00015020454	smg6	79	52.741	ENSSBOG00000022518	SMG6	88	50.632	Saimiri_boliviensis_boliviensis
ENSORLG00015020454	smg6	79	52.491	ENSSHAG00000010045	SMG6	89	52.083	Sarcophilus_harrisii
ENSORLG00015020454	smg6	91	52.863	ENSSFOG00015005436	smg6	91	53.346	Scleropages_formosus
ENSORLG00015020454	smg6	100	67.479	ENSSMAG00000019777	smg6	100	67.004	Scophthalmus_maximus
ENSORLG00015020454	smg6	100	70.764	ENSSDUG00000016412	smg6	100	70.227	Seriola_dumerili
ENSORLG00015020454	smg6	91	71.072	ENSSLDG00000020747	smg6	98	70.480	Seriola_lalandi_dorsalis
ENSORLG00015020454	smg6	74	52.950	ENSSPUG00000007152	SMG6	86	50.633	Sphenodon_punctatus
ENSORLG00015020454	smg6	100	71.189	ENSSPAG00000015633	smg6	100	71.386	Stegastes_partitus
ENSORLG00015020454	smg6	74	55.259	ENSSSCG00000017826	SMG6	83	54.252	Sus_scrofa
ENSORLG00015020454	smg6	77	52.608	ENSTGUG00000005836	SMG6	88	52.856	Taeniopygia_guttata
ENSORLG00015020454	smg6	90	64.120	ENSTRUG00000000358	smg6	98	64.101	Takifugu_rubripes
ENSORLG00015020454	smg6	93	71.407	ENSTNIG00000016164	smg6	100	71.747	Tetraodon_nigroviridis
ENSORLG00015020454	smg6	74	52.532	ENSTBEG00000011424	SMG6	83	51.978	Tupaia_belangeri
ENSORLG00015020454	smg6	66	55.334	ENSTTRG00000001175	SMG6	74	54.623	Tursiops_truncatus
ENSORLG00015020454	smg6	74	54.808	ENSUAMG00000025152	SMG6	85	54.317	Ursus_americanus
ENSORLG00015020454	smg6	74	54.980	ENSUMAG00000009306	SMG6	85	54.331	Ursus_maritimus
ENSORLG00015020454	smg6	60	88.889	ENSVPAG00000000225	SMG6	71	88.889	Vicugna_pacos
ENSORLG00015020454	smg6	74	54.839	ENSVVUG00000021727	SMG6	85	53.987	Vulpes_vulpes
ENSORLG00015020454	smg6	66	53.369	ENSXETG00000023799	SMG6	74	52.810	Xenopus_tropicalis
ENSORLG00015020454	smg6	98	65.648	ENSXCOG00000009867	smg6	99	65.037	Xiphophorus_couchianus
ENSORLG00015020454	smg6	100	67.806	ENSXMAG00000010321	smg6	100	66.966	Xiphophorus_maculatus