EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015020858 (Gene tree)
Gene ID: -
Gene Symbol: chd7
Alias: -
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 88029 bases
Position: chr17:21695006-21783034
Accession: 101165345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015034704	ResIII	PF04851.15	1.1e-05	1	1
ENSORLP00015034736	ResIII	PF04851.15	1.1e-05	1	1
ENSORLP00015034704	BRK	PF07533.16	4.1e-20	1	1
ENSORLP00015034736	BRK	PF07533.16	4.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015028914	-	12445	XM_023965274	ENSORLP00015034736	3310 (aa)	XP_023821042	-
ENSORLT00015028767	-	12274	XM_023965276	ENSORLP00015034704	3310 (aa)	XP_023821044	-

Gene Model

Click here to download ENSORLG00015020858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015020858's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015020858	chd7	57	61.559	ENSORLG00015019126	chd9	84	63.389

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015020858	chd7	68	79.103	ENSG00000171316	CHD7	97	64.516	Homo_sapiens
ENSORLG00015020858	chd7	75	85.635	ENSAPOG00000009351	chd7	98	88.130	Acanthochromis_polyacanthus
ENSORLG00015020858	chd7	68	80.528	ENSAMEG00000005699	CHD7	71	78.740	Ailuropoda_melanoleuca
ENSORLG00015020858	chd7	68	93.274	ENSACIG00000001590	chd7	98	93.274	Amphilophus_citrinellus
ENSORLG00015020858	chd7	72	85.318	ENSAOCG00000002337	chd7	97	93.003	Amphiprion_ocellaris
ENSORLG00015020858	chd7	98	84.063	ENSAPEG00000010332	chd7	98	84.973	Amphiprion_percula
ENSORLG00015020858	chd7	70	85.105	ENSATEG00000002590	chd7	93	86.367	Anabas_testudineus
ENSORLG00015020858	chd7	67	79.229	ENSAPLG00000005873	CHD7	75	69.833	Anas_platyrhynchos
ENSORLG00015020858	chd7	68	78.600	ENSACAG00000005760	CHD7	72	71.336	Anolis_carolinensis
ENSORLG00015020858	chd7	68	79.103	ENSANAG00000035300	CHD7	71	72.000	Aotus_nancymaae
ENSORLG00015020858	chd7	67	80.313	ENSBTAG00000021841	CHD7	77	72.495	Bos_taurus
ENSORLG00015020858	chd7	68	79.103	ENSCJAG00000009025	CHD7	71	72.215	Callithrix_jacchus
ENSORLG00015020858	chd7	70	79.343	ENSCAFG00000007167	CHD7	71	78.504	Canis_familiaris
ENSORLG00015020858	chd7	70	78.749	ENSCAFG00020015856	CHD7	71	77.323	Canis_lupus_dingo
ENSORLG00015020858	chd7	68	80.611	ENSCHIG00000011729	CHD7	72	72.692	Capra_hircus
ENSORLG00015020858	chd7	66	80.033	ENSTSYG00000004018	CHD7	71	71.803	Carlito_syrichta
ENSORLG00015020858	chd7	50	60.437	ENSCAPG00000016749	CHD8	60	62.540	Cavia_aperea
ENSORLG00015020858	chd7	69	74.139	ENSCAPG00000007952	CHD7	71	75.000	Cavia_aperea
ENSORLG00015020858	chd7	50	66.392	ENSCPOG00000002538	CHD8	61	68.914	Cavia_porcellus
ENSORLG00015020858	chd7	69	79.057	ENSCPOG00000013385	CHD7	71	78.712	Cavia_porcellus
ENSORLG00015020858	chd7	67	79.280	ENSCCAG00000025831	CHD7	71	72.215	Cebus_capucinus
ENSORLG00015020858	chd7	68	79.103	ENSCATG00000020229	CHD7	72	72.251	Cercocebus_atys
ENSORLG00015020858	chd7	68	78.834	ENSCLAG00000004679	CHD7	72	72.125	Chinchilla_lanigera
ENSORLG00015020858	chd7	68	79.023	ENSCSAG00000014349	CHD7	72	72.186	Chlorocebus_sabaeus
ENSORLG00015020858	chd7	82	80.922	ENSCPBG00000021517	CHD7	94	79.822	Chrysemys_picta_bellii
ENSORLG00015020858	chd7	67	78.943	ENSCANG00000041382	CHD7	74	72.120	Colobus_angolensis_palliatus
ENSORLG00015020858	chd7	68	79.360	ENSCGRG00001011949	Chd7	72	72.201	Cricetulus_griseus_chok1gshd
ENSORLG00015020858	chd7	68	74.194	ENSCGRG00000000481	Chd7	68	73.936	Cricetulus_griseus_crigri
ENSORLG00015020858	chd7	71	83.388	ENSCSEG00000017886	chd7	96	82.752	Cynoglossus_semilaevis
ENSORLG00015020858	chd7	98	82.218	ENSCVAG00000017584	chd7	98	82.813	Cyprinodon_variegatus
ENSORLG00015020858	chd7	76	69.267	ENSDARG00000075211	chd7	95	69.534	Danio_rerio
ENSORLG00015020858	chd7	67	79.183	ENSDNOG00000011674	CHD7	71	78.346	Dasypus_novemcinctus
ENSORLG00015020858	chd7	68	78.918	ENSDORG00000003515	Chd7	72	71.708	Dipodomys_ordii
ENSORLG00015020858	chd7	54	76.287	ENSETEG00000016689	-	56	77.129	Echinops_telfairi
ENSORLG00015020858	chd7	58	68.023	ENSEBUG00000007607	chd8	63	69.513	Eptatretus_burgeri
ENSORLG00015020858	chd7	69	79.409	ENSEASG00005016258	CHD7	73	78.571	Equus_asinus_asinus
ENSORLG00015020858	chd7	73	79.409	ENSECAG00000001445	CHD7	88	78.571	Equus_caballus
ENSORLG00015020858	chd7	50	62.071	ENSECAG00000016102	CHD8	61	69.182	Equus_caballus
ENSORLG00015020858	chd7	77	83.736	ENSEEUG00000013559	CHD7	79	77.820	Erinaceus_europaeus
ENSORLG00015020858	chd7	82	79.167	ENSELUG00000024442	chd7	94	77.394	Esox_lucius
ENSORLG00015020858	chd7	69	79.346	ENSFCAG00000003849	CHD7	70	78.931	Felis_catus
ENSORLG00015020858	chd7	69	70.000	ENSFALG00000005570	CHD7	75	69.833	Ficedula_albicollis
ENSORLG00015020858	chd7	68	80.329	ENSFDAG00000000528	CHD7	72	72.190	Fukomys_damarensis
ENSORLG00015020858	chd7	98	82.198	ENSFHEG00000001311	chd7	98	82.576	Fundulus_heteroclitus
ENSORLG00015020858	chd7	56	85.380	ENSGMOG00000004232	chd7	92	85.263	Gadus_morhua
ENSORLG00015020858	chd7	67	79.308	ENSGALG00000041080	CHD7	52	55.678	Gallus_gallus
ENSORLG00015020858	chd7	80	83.636	ENSGAFG00000006858	chd7	95	84.508	Gambusia_affinis
ENSORLG00015020858	chd7	76	80.576	ENSGAGG00000017996	CHD7	94	79.733	Gopherus_agassizii
ENSORLG00015020858	chd7	68	79.183	ENSGGOG00000012224	CHD7	72	72.317	Gorilla_gorilla
ENSORLG00015020858	chd7	75	83.782	ENSHBUG00000019225	chd7	99	81.763	Haplochromis_burtoni
ENSORLG00015020858	chd7	67	80.231	ENSHGLG00000017268	CHD7	72	71.977	Heterocephalus_glaber_female
ENSORLG00015020858	chd7	67	80.231	ENSHGLG00100015649	CHD7	72	71.977	Heterocephalus_glaber_male
ENSORLG00015020858	chd7	99	76.243	ENSHCOG00000014380	chd7	98	80.382	Hippocampus_comes
ENSORLG00015020858	chd7	67	73.691	ENSIPUG00000007585	chd7	95	73.533	Ictalurus_punctatus
ENSORLG00015020858	chd7	50	64.965	ENSIPUG00000019891	chd8	63	64.196	Ictalurus_punctatus
ENSORLG00015020858	chd7	68	79.103	ENSSTOG00000011949	CHD7	72	71.792	Ictidomys_tridecemlineatus
ENSORLG00015020858	chd7	55	66.567	ENSSTOG00000001854	CHD8	61	69.182	Ictidomys_tridecemlineatus
ENSORLG00015020858	chd7	68	79.360	ENSJJAG00000022064	Chd7	71	78.521	Jaculus_jaculus
ENSORLG00015020858	chd7	98	83.166	ENSKMAG00000009724	chd7	99	82.858	Kryptolebias_marmoratus
ENSORLG00015020858	chd7	99	79.806	ENSLBEG00000020842	chd7	98	80.570	Labrus_bergylta
ENSORLG00015020858	chd7	50	66.981	ENSLACG00000011367	CHD8	67	66.149	Latimeria_chalumnae
ENSORLG00015020858	chd7	64	72.398	ENSLACG00000002461	CHD7	75	62.733	Latimeria_chalumnae
ENSORLG00015020858	chd7	63	75.131	ENSLOCG00000005062	chd7	70	76.625	Lepisosteus_oculatus
ENSORLG00015020858	chd7	67	79.153	ENSLAFG00000000403	CHD7	72	72.335	Loxodonta_africana
ENSORLG00015020858	chd7	67	80.281	ENSMFAG00000041825	CHD7	84	78.442	Macaca_fascicularis
ENSORLG00015020858	chd7	68	79.103	ENSMMUG00000011584	CHD7	72	72.251	Macaca_mulatta
ENSORLG00015020858	chd7	68	79.103	ENSMNEG00000040978	CHD7	72	72.251	Macaca_nemestrina
ENSORLG00015020858	chd7	68	79.103	ENSMLEG00000038817	CHD7	72	72.251	Mandrillus_leucophaeus
ENSORLG00015020858	chd7	98	80.536	ENSMAMG00000011569	chd7	98	80.372	Mastacembelus_armatus
ENSORLG00015020858	chd7	75	83.742	ENSMZEG00005010646	chd7	99	81.703	Maylandia_zebra
ENSORLG00015020858	chd7	67	79.229	ENSMGAG00000011092	CHD7	51	56.204	Meleagris_gallopavo
ENSORLG00015020858	chd7	65	81.436	ENSMAUG00000001000	Chd7	69	73.692	Mesocricetus_auratus
ENSORLG00015020858	chd7	68	79.103	ENSMICG00000002430	CHD7	71	78.521	Microcebus_murinus
ENSORLG00015020858	chd7	68	79.330	ENSMOCG00000011408	Chd7	71	78.493	Microtus_ochrogaster
ENSORLG00015020858	chd7	71	79.134	ENSMODG00000008488	CHD7	74	72.331	Monodelphis_domestica
ENSORLG00015020858	chd7	74	82.396	ENSMALG00000004389	chd7	98	83.798	Monopterus_albus
ENSORLG00015020858	chd7	81	79.489	MGP_CAROLIEiJ_G0025797	Chd7	71	78.650	Mus_caroli
ENSORLG00015020858	chd7	68	79.360	ENSMUSG00000041235	Chd7	71	78.521	Mus_musculus
ENSORLG00015020858	chd7	68	79.360	MGP_PahariEiJ_G0023920	Chd7	71	78.521	Mus_pahari
ENSORLG00015020858	chd7	68	79.489	MGP_SPRETEiJ_G0026745	Chd7	71	78.650	Mus_spretus
ENSORLG00015020858	chd7	56	80.528	ENSMPUG00000002338	CHD7	75	78.678	Mustela_putorius_furo
ENSORLG00015020858	chd7	67	77.906	ENSMLUG00000015266	CHD7	71	76.404	Myotis_lucifugus
ENSORLG00015020858	chd7	92	61.479	ENSNGAG00000010767	Chd7	72	72.070	Nannospalax_galili
ENSORLG00015020858	chd7	74	80.374	ENSNBRG00000001280	chd7	96	78.936	Neolamprologus_brichardi
ENSORLG00015020858	chd7	68	79.023	ENSNLEG00000002027	CHD7	72	72.186	Nomascus_leucogenys
ENSORLG00015020858	chd7	74	74.370	ENSMEUG00000010045	CHD7	81	73.810	Notamacropus_eugenii
ENSORLG00015020858	chd7	68	78.712	ENSODEG00000002424	CHD7	72	72.400	Octodon_degus
ENSORLG00015020858	chd7	97	78.809	ENSONIG00000016614	chd7	100	75.908	Oreochromis_niloticus
ENSORLG00015020858	chd7	68	80.446	ENSOCUG00000010034	CHD7	86	79.200	Oryctolagus_cuniculus
ENSORLG00015020858	chd7	100	98.974	ENSORLG00000013492	chd7	100	98.974	Oryzias_latipes
ENSORLG00015020858	chd7	100	99.215	ENSORLG00020020002	chd7	100	99.215	Oryzias_latipes_hni
ENSORLG00015020858	chd7	100	95.808	ENSOMEG00000016881	chd7	100	95.808	Oryzias_melastigma
ENSORLG00015020858	chd7	68	79.393	ENSOGAG00000013905	CHD7	71	78.807	Otolemur_garnettii
ENSORLG00015020858	chd7	69	72.342	ENSOARG00000016176	CHD7	70	78.425	Ovis_aries
ENSORLG00015020858	chd7	68	79.103	ENSPPAG00000033330	CHD7	72	72.251	Pan_paniscus
ENSORLG00015020858	chd7	51	66.393	ENSPPAG00000039987	CHD8	61	68.745	Pan_paniscus
ENSORLG00015020858	chd7	69	79.409	ENSPPRG00000022248	CHD7	71	78.397	Panthera_pardus
ENSORLG00015020858	chd7	65	78.389	ENSPTIG00000011702	CHD7	69	77.973	Panthera_tigris_altaica
ENSORLG00015020858	chd7	68	79.103	ENSPTRG00000020286	CHD7	72	72.251	Pan_troglodytes
ENSORLG00015020858	chd7	68	79.103	ENSPANG00000018419	CHD7	72	72.251	Papio_anubis
ENSORLG00015020858	chd7	50	64.481	ENSPKIG00000009142	chd8	63	64.420	Paramormyrops_kingsleyae
ENSORLG00015020858	chd7	69	79.744	ENSPSIG00000012003	CHD7	72	72.186	Pelodiscus_sinensis
ENSORLG00015020858	chd7	69	85.771	ENSPMGG00000018543	chd7	93	84.850	Periophthalmus_magnuspinnatus
ENSORLG00015020858	chd7	67	80.348	ENSPEMG00000023028	Chd7	71	79.092	Peromyscus_maniculatus_bairdii
ENSORLG00015020858	chd7	70	80.378	ENSPCIG00000000025	-	94	68.601	Phascolarctos_cinereus
ENSORLG00015020858	chd7	58	63.360	ENSPFOG00000010939	-	92	64.540	Poecilia_formosa
ENSORLG00015020858	chd7	99	82.049	ENSPFOG00000004891	chd7	99	97.403	Poecilia_formosa
ENSORLG00015020858	chd7	99	82.019	ENSPLAG00000023322	chd7	98	82.824	Poecilia_latipinna
ENSORLG00015020858	chd7	75	85.336	ENSPMEG00000005879	chd7	96	77.921	Poecilia_mexicana
ENSORLG00015020858	chd7	50	92.999	ENSPREG00000014744	chd7	96	77.132	Poecilia_reticulata
ENSORLG00015020858	chd7	68	79.103	ENSPPYG00000018618	CHD7	72	72.251	Pongo_abelii
ENSORLG00015020858	chd7	74	76.404	ENSPCAG00000000227	CHD7	70	68.480	Procavia_capensis
ENSORLG00015020858	chd7	68	78.703	ENSPCOG00000013850	CHD7	71	78.285	Propithecus_coquereli
ENSORLG00015020858	chd7	64	81.896	ENSPVAG00000011873	CHD7	66	81.801	Pteropus_vampyrus
ENSORLG00015020858	chd7	73	85.591	ENSPNYG00000012490	chd7	98	79.066	Pundamilia_nyererei
ENSORLG00015020858	chd7	67	77.203	ENSPNAG00000011245	chd7	98	77.203	Pygocentrus_nattereri
ENSORLG00015020858	chd7	91	67.727	ENSRNOG00000006689	Chd7	72	72.255	Rattus_norvegicus
ENSORLG00015020858	chd7	67	78.045	ENSRBIG00000043575	CHD7	71	71.298	Rhinopithecus_bieti
ENSORLG00015020858	chd7	67	79.200	ENSRROG00000008981	CHD7	71	72.595	Rhinopithecus_roxellana
ENSORLG00015020858	chd7	68	79.103	ENSSBOG00000021462	CHD7	71	72.215	Saimiri_boliviensis_boliviensis
ENSORLG00015020858	chd7	69	79.055	ENSSHAG00000011522	CHD7	75	72.331	Sarcophilus_harrisii
ENSORLG00015020858	chd7	55	65.246	ENSSHAG00000008118	CHD8	59	69.023	Sarcophilus_harrisii
ENSORLG00015020858	chd7	67	75.737	ENSSFOG00015015077	chd7	68	77.164	Scleropages_formosus
ENSORLG00015020858	chd7	98	81.326	ENSSDUG00000013773	chd7	98	82.296	Seriola_dumerili
ENSORLG00015020858	chd7	52	81.269	ENSSARG00000003387	CHD7	67	82.299	Sorex_araneus
ENSORLG00015020858	chd7	75	77.577	ENSSPUG00000009235	CHD7	90	70.361	Sphenodon_punctatus
ENSORLG00015020858	chd7	75	84.724	ENSSPAG00000006320	chd7	98	84.771	Stegastes_partitus
ENSORLG00015020858	chd7	68	80.611	ENSSSCG00000006231	CHD7	72	72.299	Sus_scrofa
ENSORLG00015020858	chd7	69	69.769	ENSTGUG00000011196	CHD7	74	72.739	Taeniopygia_guttata
ENSORLG00015020858	chd7	67	78.772	ENSTRUG00000008632	chd7	98	79.729	Takifugu_rubripes
ENSORLG00015020858	chd7	57	95.556	ENSTNIG00000002647	chd7	98	81.111	Tetraodon_nigroviridis
ENSORLG00015020858	chd7	64	76.965	ENSTTRG00000004221	CHD7	69	76.330	Tursiops_truncatus
ENSORLG00015020858	chd7	69	78.669	ENSUAMG00000025734	CHD7	94	76.966	Ursus_americanus
ENSORLG00015020858	chd7	74	75.392	ENSUMAG00000010436	CHD7	87	77.580	Ursus_maritimus
ENSORLG00015020858	chd7	70	79.343	ENSVVUG00000018063	CHD7	71	78.504	Vulpes_vulpes
ENSORLG00015020858	chd7	92	57.933	ENSXETG00000026004	chd8	75	72.382	Xenopus_tropicalis
ENSORLG00015020858	chd7	54	58.757	ENSXETG00000017194	CHD8	90	72.139	Xenopus_tropicalis
ENSORLG00015020858	chd7	99	81.970	ENSXMAG00000018590	chd7	98	83.042	Xiphophorus_maculatus