EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015021064 (Gene tree)
Gene ID: -
Gene Symbol: rtca
Alias: -
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Plus strand
Length: 6092 bases
Position: chr4:25493212-25499303
Accession: ZDB-GENE-030131-9687
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015034855	RTC	PF01137.21	8.5e-88	1	1
ENSORLP00015019982	RTC	PF01137.21	1.1e-86	1	1
ENSORLP00015019982	RTC_insert	PF05189.13	4.2e-23	1	1
ENSORLP00015034855	RTC_insert	PF05189.13	4.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015029062	-	3163	-	ENSORLP00015019982	367 (aa)	-	-
ENSORLT00015029057	-	1484	-	ENSORLP00015034855	364 (aa)	-	-

Gene Model

Click here to download ENSORLG00015021064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015021064's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015021064	rtca	100	70.492	ENSG00000137996	RTCA	100	70.492	Homo_sapiens
ENSORLG00015021064	rtca	100	89.835	ENSAPOG00000001345	rtca	99	89.835	Acanthochromis_polyacanthus
ENSORLG00015021064	rtca	73	72.491	ENSAMEG00000008855	RTCA	100	72.491	Ailuropoda_melanoleuca
ENSORLG00015021064	rtca	100	88.736	ENSACIG00000019643	rtca	100	88.736	Amphilophus_citrinellus
ENSORLG00015021064	rtca	100	89.560	ENSAOCG00000014979	rtca	99	89.560	Amphiprion_ocellaris
ENSORLG00015021064	rtca	100	89.560	ENSAPEG00000006945	rtca	99	89.560	Amphiprion_percula
ENSORLG00015021064	rtca	96	91.117	ENSATEG00000006315	rtca	96	91.117	Anabas_testudineus
ENSORLG00015021064	rtca	96	67.139	ENSAPLG00000015430	RTCA	100	67.139	Anas_platyrhynchos
ENSORLG00015021064	rtca	100	70.765	ENSANAG00000025446	RTCA	100	70.765	Aotus_nancymaae
ENSORLG00015021064	rtca	100	89.286	ENSACLG00000020770	rtca	99	89.286	Astatotilapia_calliptera
ENSORLG00015021064	rtca	100	79.945	ENSAMXG00000043271	rtca	100	79.945	Astyanax_mexicanus
ENSORLG00015021064	rtca	100	71.311	ENSBTAG00000006321	RTCA	100	71.311	Bos_taurus
ENSORLG00015021064	rtca	100	70.492	ENSCJAG00000003398	RTCA	100	70.492	Callithrix_jacchus
ENSORLG00015021064	rtca	100	70.219	ENSCAFG00000020010	RTCA	68	70.219	Canis_familiaris
ENSORLG00015021064	rtca	100	70.219	ENSCAFG00020011528	RTCA	57	70.219	Canis_lupus_dingo
ENSORLG00015021064	rtca	100	71.038	ENSCHIG00000018937	RTCA	100	71.038	Capra_hircus
ENSORLG00015021064	rtca	100	70.492	ENSTSYG00000011305	RTCA	100	70.492	Carlito_syrichta
ENSORLG00015021064	rtca	100	70.219	ENSCCAG00000021844	RTCA	100	70.219	Cebus_capucinus
ENSORLG00015021064	rtca	100	68.338	ENSCATG00000019364	RTCA	100	70.550	Cercocebus_atys
ENSORLG00015021064	rtca	87	72.152	ENSCLAG00000006125	RTCA	100	72.152	Chinchilla_lanigera
ENSORLG00015021064	rtca	100	70.492	ENSCSAG00000001509	RTCA	100	70.492	Chlorocebus_sabaeus
ENSORLG00015021064	rtca	100	69.672	ENSCHOG00000005211	RTCA	100	69.672	Choloepus_hoffmanni
ENSORLG00015021064	rtca	100	67.397	ENSCPBG00000026658	RTCA	100	67.397	Chrysemys_picta_bellii
ENSORLG00015021064	rtca	98	57.103	ENSCING00000007875	-	98	57.103	Ciona_intestinalis
ENSORLG00015021064	rtca	98	56.267	ENSCSAVG00000007269	-	98	56.267	Ciona_savignyi
ENSORLG00015021064	rtca	100	70.219	ENSCANG00000040106	RTCA	100	70.219	Colobus_angolensis_palliatus
ENSORLG00015021064	rtca	73	71.747	ENSCGRG00001013163	Rtca	85	71.747	Cricetulus_griseus_chok1gshd
ENSORLG00015021064	rtca	98	84.916	ENSCSEG00000000530	rtca	96	84.916	Cynoglossus_semilaevis
ENSORLG00015021064	rtca	100	73.098	ENSCVAG00000021809	rtca	100	73.098	Cyprinodon_variegatus
ENSORLG00015021064	rtca	100	79.945	ENSDARG00000002215	rtca	100	79.945	Danio_rerio
ENSORLG00015021064	rtca	100	71.038	ENSDNOG00000000456	RTCA	100	71.038	Dasypus_novemcinctus
ENSORLG00015021064	rtca	100	70.765	ENSDORG00000005448	Rtca	100	70.765	Dipodomys_ordii
ENSORLG00015021064	rtca	98	40.056	FBgn0025630	Rtca	98	40.056	Drosophila_melanogaster
ENSORLG00015021064	rtca	94	54.070	ENSEBUG00000008556	rtca	95	54.070	Eptatretus_burgeri
ENSORLG00015021064	rtca	83	30.032	ENSEBUG00000016621	-	83	30.032	Eptatretus_burgeri
ENSORLG00015021064	rtca	100	70.765	ENSEASG00005015926	RTCA	100	70.765	Equus_asinus_asinus
ENSORLG00015021064	rtca	100	70.765	ENSECAG00000019831	RTCA	100	70.765	Equus_caballus
ENSORLG00015021064	rtca	91	63.584	ENSEEUG00000001165	RTCA	100	63.584	Erinaceus_europaeus
ENSORLG00015021064	rtca	99	77.901	ENSELUG00000003741	rtca	99	77.901	Esox_lucius
ENSORLG00015021064	rtca	100	70.765	ENSFCAG00000024460	RTCA	100	70.765	Felis_catus
ENSORLG00015021064	rtca	93	67.353	ENSFALG00000002443	RTCA	91	68.249	Ficedula_albicollis
ENSORLG00015021064	rtca	98	57.182	ENSFDAG00000016084	-	100	57.182	Fukomys_damarensis
ENSORLG00015021064	rtca	100	69.945	ENSFDAG00000012070	-	100	69.945	Fukomys_damarensis
ENSORLG00015021064	rtca	55	91.500	ENSFHEG00000002868	rtca	97	82.222	Fundulus_heteroclitus
ENSORLG00015021064	rtca	100	81.044	ENSGMOG00000013264	rtca	100	81.044	Gadus_morhua
ENSORLG00015021064	rtca	100	67.397	ENSGALG00000005277	RTCA	100	67.397	Gallus_gallus
ENSORLG00015021064	rtca	100	90.110	ENSGAFG00000011853	rtca	99	90.110	Gambusia_affinis
ENSORLG00015021064	rtca	100	86.813	ENSGACG00000013497	rtca	100	86.813	Gasterosteus_aculeatus
ENSORLG00015021064	rtca	80	67.577	ENSGAGG00000023306	RTCA	100	67.577	Gopherus_agassizii
ENSORLG00015021064	rtca	100	69.399	ENSGGOG00000044018	-	100	69.399	Gorilla_gorilla
ENSORLG00015021064	rtca	100	69.945	ENSGGOG00000009546	-	100	69.945	Gorilla_gorilla
ENSORLG00015021064	rtca	100	89.286	ENSHBUG00000002114	rtca	99	89.286	Haplochromis_burtoni
ENSORLG00015021064	rtca	100	69.945	ENSHGLG00000002617	RTCA	100	69.945	Heterocephalus_glaber_female
ENSORLG00015021064	rtca	100	69.945	ENSHGLG00100006056	RTCA	100	69.945	Heterocephalus_glaber_male
ENSORLG00015021064	rtca	100	77.747	ENSHCOG00000020628	rtca	89	77.747	Hippocampus_comes
ENSORLG00015021064	rtca	100	79.121	ENSIPUG00000024803	rtca	100	79.121	Ictalurus_punctatus
ENSORLG00015021064	rtca	100	62.842	ENSSTOG00000033099	-	100	62.842	Ictidomys_tridecemlineatus
ENSORLG00015021064	rtca	100	66.393	ENSSTOG00000013528	-	100	66.393	Ictidomys_tridecemlineatus
ENSORLG00015021064	rtca	100	52.055	ENSJJAG00000016178	Rtca	100	52.055	Jaculus_jaculus
ENSORLG00015021064	rtca	100	90.934	ENSKMAG00000006651	rtca	99	90.934	Kryptolebias_marmoratus
ENSORLG00015021064	rtca	100	88.736	ENSLBEG00000028971	rtca	100	88.736	Labrus_bergylta
ENSORLG00015021064	rtca	88	87.774	ENSLBEG00000002448	-	99	87.774	Labrus_bergylta
ENSORLG00015021064	rtca	100	66.849	ENSLACG00000013666	RTCA	100	66.849	Latimeria_chalumnae
ENSORLG00015021064	rtca	100	76.986	ENSLOCG00000000093	rtca	99	76.986	Lepisosteus_oculatus
ENSORLG00015021064	rtca	100	69.672	ENSLAFG00000001473	RTCA	100	69.672	Loxodonta_africana
ENSORLG00015021064	rtca	100	70.492	ENSMFAG00000034132	RTCA	100	70.492	Macaca_fascicularis
ENSORLG00015021064	rtca	100	70.492	ENSMMUG00000019105	RTCA	100	70.492	Macaca_mulatta
ENSORLG00015021064	rtca	84	70.227	ENSMNEG00000037163	RTCA	100	70.227	Macaca_nemestrina
ENSORLG00015021064	rtca	100	58.470	ENSMLEG00000042151	RTCA	100	58.470	Mandrillus_leucophaeus
ENSORLG00015021064	rtca	100	89.835	ENSMAMG00000016536	rtca	100	89.835	Mastacembelus_armatus
ENSORLG00015021064	rtca	100	89.286	ENSMZEG00005017945	rtca	99	89.286	Maylandia_zebra
ENSORLG00015021064	rtca	87	67.925	ENSMGAG00000006892	RTCA	99	67.925	Meleagris_gallopavo
ENSORLG00015021064	rtca	100	71.311	ENSMAUG00000008488	Rtca	100	71.311	Mesocricetus_auratus
ENSORLG00015021064	rtca	84	71.197	ENSMICG00000008643	RTCA	100	71.197	Microcebus_murinus
ENSORLG00015021064	rtca	100	70.765	ENSMOCG00000016660	Rtca	100	70.765	Microtus_ochrogaster
ENSORLG00015021064	rtca	84	88.925	ENSMMOG00000007750	rtca	100	88.925	Mola_mola
ENSORLG00015021064	rtca	100	71.038	ENSMODG00000003557	RTCA	100	71.038	Monodelphis_domestica
ENSORLG00015021064	rtca	100	89.286	ENSMALG00000020844	rtca	100	89.286	Monopterus_albus
ENSORLG00015021064	rtca	100	69.672	MGP_CAROLIEiJ_G0025565	Rtca	100	69.672	Mus_caroli
ENSORLG00015021064	rtca	100	69.399	ENSMUSG00000000339	Rtca	100	69.399	Mus_musculus
ENSORLG00015021064	rtca	100	69.672	MGP_PahariEiJ_G0027011	Rtca	100	69.672	Mus_pahari
ENSORLG00015021064	rtca	100	69.672	MGP_SPRETEiJ_G0026515	Rtca	100	69.672	Mus_spretus
ENSORLG00015021064	rtca	100	70.765	ENSMPUG00000012119	RTCA	100	70.765	Mustela_putorius_furo
ENSORLG00015021064	rtca	100	67.575	ENSMLUG00000009922	RTCA	100	67.575	Myotis_lucifugus
ENSORLG00015021064	rtca	100	69.945	ENSNGAG00000011540	Rtca	99	69.945	Nannospalax_galili
ENSORLG00015021064	rtca	100	89.286	ENSNBRG00000003062	rtca	99	89.286	Neolamprologus_brichardi
ENSORLG00015021064	rtca	100	70.219	ENSNLEG00000031426	RTCA	100	70.219	Nomascus_leucogenys
ENSORLG00015021064	rtca	73	68.401	ENSOPRG00000012092	RTCA	71	68.401	Ochotona_princeps
ENSORLG00015021064	rtca	95	71.839	ENSODEG00000006990	RTCA	96	72.080	Octodon_degus
ENSORLG00015021064	rtca	100	89.286	ENSONIG00000007753	rtca	99	89.286	Oreochromis_niloticus
ENSORLG00015021064	rtca	87	70.662	ENSOANG00000012055	RTCA	98	70.662	Ornithorhynchus_anatinus
ENSORLG00015021064	rtca	100	70.765	ENSOCUG00000014247	RTCA	100	70.765	Oryctolagus_cuniculus
ENSORLG00015021064	rtca	100	99.451	ENSORLG00000013605	rtca	100	99.451	Oryzias_latipes
ENSORLG00015021064	rtca	100	99.725	ENSORLG00020001904	rtca	100	99.725	Oryzias_latipes_hni
ENSORLG00015021064	rtca	100	95.879	ENSOMEG00000000756	rtca	100	95.879	Oryzias_melastigma
ENSORLG00015021064	rtca	100	65.027	ENSOGAG00000005627	RTCA	100	65.027	Otolemur_garnettii
ENSORLG00015021064	rtca	87	71.384	ENSOARG00000018122	RTCA	100	71.384	Ovis_aries
ENSORLG00015021064	rtca	100	67.546	ENSPPAG00000035119	RTCA	100	69.579	Pan_paniscus
ENSORLG00015021064	rtca	100	71.038	ENSPPRG00000000350	RTCA	100	71.038	Panthera_pardus
ENSORLG00015021064	rtca	100	70.492	ENSPTIG00000012816	RTCA	100	70.492	Panthera_tigris_altaica
ENSORLG00015021064	rtca	100	67.546	ENSPTRG00000001004	RTCA	100	69.579	Pan_troglodytes
ENSORLG00015021064	rtca	100	70.492	ENSPANG00000000346	RTCA	100	70.492	Papio_anubis
ENSORLG00015021064	rtca	100	82.967	ENSPKIG00000001653	rtca	100	82.967	Paramormyrops_kingsleyae
ENSORLG00015021064	rtca	100	67.671	ENSPSIG00000011408	RTCA	100	67.671	Pelodiscus_sinensis
ENSORLG00015021064	rtca	100	70.765	ENSPEMG00000018582	Rtca	100	70.765	Peromyscus_maniculatus_bairdii
ENSORLG00015021064	rtca	99	55.890	ENSPMAG00000009110	rtca	99	55.890	Petromyzon_marinus
ENSORLG00015021064	rtca	100	71.311	ENSPCIG00000007684	RTCA	100	71.311	Phascolarctos_cinereus
ENSORLG00015021064	rtca	100	90.137	ENSPFOG00000004824	rtca	100	90.137	Poecilia_formosa
ENSORLG00015021064	rtca	100	90.110	ENSPLAG00000011753	rtca	99	90.110	Poecilia_latipinna
ENSORLG00015021064	rtca	100	90.110	ENSPMEG00000020469	rtca	99	90.110	Poecilia_mexicana
ENSORLG00015021064	rtca	100	89.835	ENSPREG00000001365	rtca	99	89.835	Poecilia_reticulata
ENSORLG00015021064	rtca	100	70.492	ENSPPYG00000001115	RTCA	100	70.492	Pongo_abelii
ENSORLG00015021064	rtca	100	67.486	ENSPCAG00000005076	RTCA	100	67.486	Procavia_capensis
ENSORLG00015021064	rtca	100	71.038	ENSPCOG00000005603	RTCA	100	71.038	Propithecus_coquereli
ENSORLG00015021064	rtca	100	66.755	ENSPVAG00000009478	RTCA	100	66.755	Pteropus_vampyrus
ENSORLG00015021064	rtca	100	89.286	ENSPNYG00000004722	rtca	99	89.286	Pundamilia_nyererei
ENSORLG00015021064	rtca	100	79.670	ENSPNAG00000022270	rtca	100	79.670	Pygocentrus_nattereri
ENSORLG00015021064	rtca	100	69.399	ENSRNOG00000014575	Rtca	100	69.399	Rattus_norvegicus
ENSORLG00015021064	rtca	100	67.546	ENSRBIG00000041180	RTCA	100	69.579	Rhinopithecus_bieti
ENSORLG00015021064	rtca	100	69.945	ENSRROG00000024929	RTCA	100	69.945	Rhinopithecus_roxellana
ENSORLG00015021064	rtca	100	69.672	ENSSBOG00000028626	RTCA	100	69.672	Saimiri_boliviensis_boliviensis
ENSORLG00015021064	rtca	100	71.311	ENSSHAG00000001758	RTCA	100	71.311	Sarcophilus_harrisii
ENSORLG00015021064	rtca	99	86.944	ENSSMAG00000014680	rtca	97	86.944	Scophthalmus_maximus
ENSORLG00015021064	rtca	98	91.061	ENSSDUG00000015585	rtca	98	90.331	Seriola_dumerili
ENSORLG00015021064	rtca	96	91.691	ENSSLDG00000018985	rtca	95	91.691	Seriola_lalandi_dorsalis
ENSORLG00015021064	rtca	87	66.562	ENSSARG00000013993	RTCA	100	66.562	Sorex_araneus
ENSORLG00015021064	rtca	100	89.560	ENSSPAG00000011938	rtca	99	89.560	Stegastes_partitus
ENSORLG00015021064	rtca	100	71.038	ENSSSCG00000006865	RTCA	100	71.038	Sus_scrofa
ENSORLG00015021064	rtca	100	67.945	ENSTGUG00000005154	RTCA	100	67.945	Taeniopygia_guttata
ENSORLG00015021064	rtca	100	89.011	ENSTRUG00000008799	rtca	100	89.011	Takifugu_rubripes
ENSORLG00015021064	rtca	100	86.813	ENSTNIG00000004725	rtca	100	86.813	Tetraodon_nigroviridis
ENSORLG00015021064	rtca	58	56.190	ENSTBEG00000000943	RTCA	62	82.353	Tupaia_belangeri
ENSORLG00015021064	rtca	100	68.602	ENSTTRG00000015327	RTCA	100	68.602	Tursiops_truncatus
ENSORLG00015021064	rtca	98	67.769	ENSUAMG00000017265	RTCA	100	67.769	Ursus_americanus
ENSORLG00015021064	rtca	100	70.219	ENSUMAG00000007881	RTCA	100	70.219	Ursus_maritimus
ENSORLG00015021064	rtca	87	63.091	ENSVPAG00000001039	RTCA	84	63.091	Vicugna_pacos
ENSORLG00015021064	rtca	100	70.219	ENSVVUG00000022041	RTCA	68	70.219	Vulpes_vulpes
ENSORLG00015021064	rtca	99	58.038	ENSXETG00000031661	RTCA	99	58.038	Xenopus_tropicalis
ENSORLG00015021064	rtca	100	77.747	ENSXCOG00000008002	rtca	100	77.747	Xiphophorus_couchianus
ENSORLG00015021064	rtca	100	89.560	ENSXMAG00000005482	rtca	99	89.560	Xiphophorus_maculatus