EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015021393 (Gene tree)
Gene ID: -
Gene Symbol: prpf38a
Alias: -
Full Name: pre-mRNA processing factor 38A
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 73748 bases
Position: chr4:25276806-25350553
Accession: 101172647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015020252	PRP38	PF03371.15	7e-63	1	1
ENSORLP00015020235	PRP38	PF03371.15	7.8e-63	1	1
ENSORLP00015035054	PRP38	PF03371.15	7.8e-63	1	1
ENSORLP00015020259	PRP38	PF03371.15	8.8e-63	1	1
ENSORLP00015020267	PRP38	PF03371.15	8.8e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015029431	-	1313	-	ENSORLP00015035054	295 (aa)	-	-
ENSORLT00015029402	-	953	-	ENSORLP00015020252	289 (aa)	-	-
ENSORLT00015035930	-	1231	-	ENSORLP00015020267	309 (aa)	-	-
ENSORLT00015035928	-	1270	XM_023954432	ENSORLP00015020259	309 (aa)	XP_023810200	-
ENSORLT00015035918	-	1492	-	ENSORLP00015020235	295 (aa)	-	-

Gene Model

Click here to download ENSORLG00015021393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015021393's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015021393	prpf38a	99	82.051	ENSG00000134748	PRPF38A	96	82.000	Homo_sapiens
ENSORLG00015021393	prpf38a	99	95.779	ENSAPOG00000011652	prpf38a	99	95.779	Acanthochromis_polyacanthus
ENSORLG00015021393	prpf38a	99	82.051	ENSAMEG00000009319	PRPF38A	96	82.000	Ailuropoda_melanoleuca
ENSORLG00015021393	prpf38a	75	93.243	ENSACIG00000012292	prpf38a	96	87.415	Amphilophus_citrinellus
ENSORLG00015021393	prpf38a	99	95.779	ENSAOCG00000018004	prpf38a	99	95.779	Amphiprion_ocellaris
ENSORLG00015021393	prpf38a	99	95.779	ENSAPEG00000021414	prpf38a	99	95.779	Amphiprion_percula
ENSORLG00015021393	prpf38a	75	93.213	ENSATEG00000004608	prpf38a	99	94.156	Anabas_testudineus
ENSORLG00015021393	prpf38a	79	77.733	ENSAPLG00000005827	PRPF38A	95	77.447	Anas_platyrhynchos
ENSORLG00015021393	prpf38a	99	79.808	ENSACAG00000008249	PRPF38A	96	79.667	Anolis_carolinensis
ENSORLG00015021393	prpf38a	99	55.873	ENSANAG00000029204	-	96	55.667	Aotus_nancymaae
ENSORLG00015021393	prpf38a	99	82.051	ENSANAG00000027839	PRPF38A	96	82.000	Aotus_nancymaae
ENSORLG00015021393	prpf38a	75	92.308	ENSACLG00000021595	prpf38a	99	93.506	Astatotilapia_calliptera
ENSORLG00015021393	prpf38a	99	84.295	ENSAMXG00000029274	prpf38a	99	86.218	Astyanax_mexicanus
ENSORLG00015021393	prpf38a	99	82.051	ENSBTAG00000002720	PRPF38A	96	82.000	Bos_taurus
ENSORLG00015021393	prpf38a	67	63.077	WBGene00008380	prp-38	69	58.559	Caenorhabditis_elegans
ENSORLG00015021393	prpf38a	99	82.051	ENSCJAG00000021594	PRPF38A	96	82.000	Callithrix_jacchus
ENSORLG00015021393	prpf38a	99	82.051	ENSCAFG00000003740	PRPF38A	96	82.000	Canis_familiaris
ENSORLG00015021393	prpf38a	99	82.051	ENSCAFG00020010939	PRPF38A	96	82.000	Canis_lupus_dingo
ENSORLG00015021393	prpf38a	99	82.051	ENSCHIG00000024730	PRPF38A	96	82.000	Capra_hircus
ENSORLG00015021393	prpf38a	99	82.051	ENSTSYG00000009868	-	96	82.000	Carlito_syrichta
ENSORLG00015021393	prpf38a	86	79.182	ENSTSYG00000031994	-	91	78.988	Carlito_syrichta
ENSORLG00015021393	prpf38a	99	83.548	ENSCPOG00000005079	PRPF38A	96	84.228	Cavia_porcellus
ENSORLG00015021393	prpf38a	78	89.177	ENSCCAG00000026502	PRPF38A	96	81.667	Cebus_capucinus
ENSORLG00015021393	prpf38a	97	53.287	ENSCATG00000044190	-	78	54.357	Cercocebus_atys
ENSORLG00015021393	prpf38a	99	82.051	ENSCATG00000032296	PRPF38A	96	82.000	Cercocebus_atys
ENSORLG00015021393	prpf38a	99	82.051	ENSCLAG00000005816	PRPF38A	96	82.000	Chinchilla_lanigera
ENSORLG00015021393	prpf38a	77	95.833	ENSCHOG00000008388	PRPF38A	74	95.833	Choloepus_hoffmanni
ENSORLG00015021393	prpf38a	99	81.090	ENSCPBG00000014791	PRPF38A	96	81.000	Chrysemys_picta_bellii
ENSORLG00015021393	prpf38a	79	67.544	ENSCSAVG00000009580	-	76	67.521	Ciona_savignyi
ENSORLG00015021393	prpf38a	78	89.177	ENSCANG00000032608	PRPF38A	100	81.940	Colobus_angolensis_palliatus
ENSORLG00015021393	prpf38a	88	72.414	ENSCGRG00001002557	-	74	76.471	Cricetulus_griseus_chok1gshd
ENSORLG00015021393	prpf38a	99	82.051	ENSCGRG00001018502	-	96	82.000	Cricetulus_griseus_chok1gshd
ENSORLG00015021393	prpf38a	99	82.051	ENSCGRG00000014868	Prpf38a	96	82.000	Cricetulus_griseus_crigri
ENSORLG00015021393	prpf38a	75	92.760	ENSCSEG00000001269	prpf38a	100	86.735	Cynoglossus_semilaevis
ENSORLG00015021393	prpf38a	100	96.271	ENSCVAG00000012305	prpf38a	100	96.117	Cyprinodon_variegatus
ENSORLG00015021393	prpf38a	99	83.654	ENSDARG00000039213	prpf38a	99	85.577	Danio_rerio
ENSORLG00015021393	prpf38a	99	82.051	ENSDNOG00000042326	PRPF38A	97	81.940	Dasypus_novemcinctus
ENSORLG00015021393	prpf38a	84	97.917	ENSDORG00000023857	-	95	97.917	Dipodomys_ordii
ENSORLG00015021393	prpf38a	88	75.573	ENSDORG00000025371	-	82	78.205	Dipodomys_ordii
ENSORLG00015021393	prpf38a	88	75.573	ENSDORG00000023691	-	82	78.205	Dipodomys_ordii
ENSORLG00015021393	prpf38a	71	72.330	FBgn0050342	Prp38	57	75.532	Drosophila_melanogaster
ENSORLG00015021393	prpf38a	80	80.753	ENSEBUG00000012588	prpf38a	96	73.333	Eptatretus_burgeri
ENSORLG00015021393	prpf38a	99	82.051	ENSEASG00005014427	PRPF38A	96	82.000	Equus_asinus_asinus
ENSORLG00015021393	prpf38a	99	82.051	ENSECAG00000022628	PRPF38A	96	82.000	Equus_caballus
ENSORLG00015021393	prpf38a	75	92.760	ENSELUG00000021094	prpf38a	100	93.220	Esox_lucius
ENSORLG00015021393	prpf38a	99	82.051	ENSFCAG00000002518	PRPF38A	96	82.000	Felis_catus
ENSORLG00015021393	prpf38a	86	78.967	ENSFALG00000005598	-	96	78.764	Ficedula_albicollis
ENSORLG00015021393	prpf38a	100	76.768	ENSFALG00000003612	-	76	81.938	Ficedula_albicollis
ENSORLG00015021393	prpf38a	99	83.226	ENSFDAG00000011287	PRPF38A	96	81.667	Fukomys_damarensis
ENSORLG00015021393	prpf38a	95	82.796	ENSFHEG00000014317	prpf38a	100	94.915	Fundulus_heteroclitus
ENSORLG00015021393	prpf38a	57	97.590	ENSGMOG00000011384	prpf38a	54	97.590	Gadus_morhua
ENSORLG00015021393	prpf38a	99	81.731	ENSGALG00000010627	PRPF38A	96	81.667	Gallus_gallus
ENSORLG00015021393	prpf38a	95	93.548	ENSGAFG00000012422	prpf38a	100	95.793	Gambusia_affinis
ENSORLG00015021393	prpf38a	75	92.377	ENSGACG00000005423	prpf38a	100	93.248	Gasterosteus_aculeatus
ENSORLG00015021393	prpf38a	54	90.000	ENSGACG00000000182	-	100	90.000	Gasterosteus_aculeatus
ENSORLG00015021393	prpf38a	99	81.090	ENSGAGG00000020547	PRPF38A	96	81.000	Gopherus_agassizii
ENSORLG00015021393	prpf38a	99	82.051	ENSGGOG00000003940	PRPF38A	96	82.000	Gorilla_gorilla
ENSORLG00015021393	prpf38a	65	95.238	ENSHBUG00000020572	prpf38a	80	95.213	Haplochromis_burtoni
ENSORLG00015021393	prpf38a	99	73.548	ENSHGLG00000007918	-	96	71.284	Heterocephalus_glaber_female
ENSORLG00015021393	prpf38a	99	82.051	ENSHGLG00000000475	PRPF38A	96	82.000	Heterocephalus_glaber_female
ENSORLG00015021393	prpf38a	99	73.548	ENSHGLG00100003928	-	96	71.284	Heterocephalus_glaber_male
ENSORLG00015021393	prpf38a	99	82.051	ENSHGLG00100008935	PRPF38A	96	82.000	Heterocephalus_glaber_male
ENSORLG00015021393	prpf38a	69	87.192	ENSHCOG00000020781	prpf38a	59	94.149	Hippocampus_comes
ENSORLG00015021393	prpf38a	95	78.596	ENSIPUG00000005757	prpf38a	96	84.615	Ictalurus_punctatus
ENSORLG00015021393	prpf38a	99	82.051	ENSSTOG00000015610	PRPF38A	96	82.000	Ictidomys_tridecemlineatus
ENSORLG00015021393	prpf38a	99	81.410	ENSJJAG00000015811	Prpf38a	96	81.333	Jaculus_jaculus
ENSORLG00015021393	prpf38a	100	96.610	ENSKMAG00000006588	prpf38a	100	96.117	Kryptolebias_marmoratus
ENSORLG00015021393	prpf38a	99	93.831	ENSLBEG00000020585	prpf38a	99	93.831	Labrus_bergylta
ENSORLG00015021393	prpf38a	99	82.692	ENSLACG00000011495	PRPF38A	96	82.667	Latimeria_chalumnae
ENSORLG00015021393	prpf38a	99	91.586	ENSLOCG00000006262	prpf38a	96	91.919	Lepisosteus_oculatus
ENSORLG00015021393	prpf38a	99	82.051	ENSLAFG00000025862	PRPF38A	96	82.000	Loxodonta_africana
ENSORLG00015021393	prpf38a	99	82.051	ENSMFAG00000039449	PRPF38A	96	82.000	Macaca_fascicularis
ENSORLG00015021393	prpf38a	86	79.336	ENSMMUG00000014333	PRPF38A	94	78.846	Macaca_mulatta
ENSORLG00015021393	prpf38a	97	53.287	ENSMNEG00000040242	-	78	54.733	Macaca_nemestrina
ENSORLG00015021393	prpf38a	99	82.051	ENSMNEG00000031221	PRPF38A	96	82.000	Macaca_nemestrina
ENSORLG00015021393	prpf38a	99	82.051	ENSMLEG00000041105	PRPF38A	96	82.000	Mandrillus_leucophaeus
ENSORLG00015021393	prpf38a	94	96.043	ENSMAMG00000015431	prpf38a	99	95.779	Mastacembelus_armatus
ENSORLG00015021393	prpf38a	75	92.308	ENSMZEG00005017838	prpf38a	99	93.506	Maylandia_zebra
ENSORLG00015021393	prpf38a	78	88.745	ENSMGAG00000011176	PRPF38A	100	81.605	Meleagris_gallopavo
ENSORLG00015021393	prpf38a	89	83.712	ENSMAUG00000018029	-	84	85.068	Mesocricetus_auratus
ENSORLG00015021393	prpf38a	99	82.051	ENSMICG00000014193	PRPF38A	96	82.000	Microcebus_murinus
ENSORLG00015021393	prpf38a	99	82.051	ENSMOCG00000013080	Prpf38a	96	82.000	Microtus_ochrogaster
ENSORLG00015021393	prpf38a	87	89.844	ENSMMOG00000016972	prpf38a	96	88.591	Mola_mola
ENSORLG00015021393	prpf38a	99	79.872	ENSMODG00000000644	PRPF38A	96	79.734	Monodelphis_domestica
ENSORLG00015021393	prpf38a	75	95.023	ENSMALG00000019363	prpf38a	97	95.455	Monopterus_albus
ENSORLG00015021393	prpf38a	99	81.731	MGP_CAROLIEiJ_G0026269	Prpf38a	96	81.667	Mus_caroli
ENSORLG00015021393	prpf38a	99	81.731	ENSMUSG00000063800	Prpf38a	96	81.667	Mus_musculus
ENSORLG00015021393	prpf38a	99	81.731	MGP_PahariEiJ_G0028602	Prpf38a	96	81.667	Mus_pahari
ENSORLG00015021393	prpf38a	99	81.410	MGP_SPRETEiJ_G0027238	Prpf38a	93	93.085	Mus_spretus
ENSORLG00015021393	prpf38a	99	82.051	ENSMPUG00000006896	PRPF38A	96	82.000	Mustela_putorius_furo
ENSORLG00015021393	prpf38a	99	83.871	ENSNGAG00000011884	Prpf38a	96	82.000	Nannospalax_galili
ENSORLG00015021393	prpf38a	75	90.991	ENSNBRG00000004013	prpf38a	94	85.374	Neolamprologus_brichardi
ENSORLG00015021393	prpf38a	100	63.880	ENSNLEG00000012592	-	98	57.333	Nomascus_leucogenys
ENSORLG00015021393	prpf38a	92	80.969	ENSNLEG00000017999	PRPF38A	89	80.866	Nomascus_leucogenys
ENSORLG00015021393	prpf38a	97	56.701	ENSNLEG00000033398	-	68	50.000	Nomascus_leucogenys
ENSORLG00015021393	prpf38a	99	78.526	ENSMEUG00000003860	PRPF38A	96	78.333	Notamacropus_eugenii
ENSORLG00015021393	prpf38a	79	87.665	ENSOPRG00000008985	PRPF38A	95	87.665	Ochotona_princeps
ENSORLG00015021393	prpf38a	99	82.051	ENSODEG00000005869	PRPF38A	96	82.000	Octodon_degus
ENSORLG00015021393	prpf38a	75	91.855	ENSONIG00000007816	prpf38a	99	93.182	Oreochromis_niloticus
ENSORLG00015021393	prpf38a	78	45.494	ENSOANG00000009541	-	96	48.344	Ornithorhynchus_anatinus
ENSORLG00015021393	prpf38a	99	82.051	ENSOCUG00000000963	PRPF38A	96	82.000	Oryctolagus_cuniculus
ENSORLG00015021393	prpf38a	100	99.676	ENSORLG00000013485	prpf38a	100	99.676	Oryzias_latipes
ENSORLG00015021393	prpf38a	100	99.676	ENSORLG00020002130	prpf38a	100	99.676	Oryzias_latipes_hni
ENSORLG00015021393	prpf38a	100	97.966	ENSOMEG00000016333	prpf38a	100	97.735	Oryzias_melastigma
ENSORLG00015021393	prpf38a	99	82.051	ENSOGAG00000005423	PRPF38A	96	82.000	Otolemur_garnettii
ENSORLG00015021393	prpf38a	99	82.051	ENSOARG00000005373	PRPF38A	96	82.000	Ovis_aries
ENSORLG00015021393	prpf38a	99	82.051	ENSPPAG00000030905	PRPF38A	96	82.000	Pan_paniscus
ENSORLG00015021393	prpf38a	97	69.759	ENSPPAG00000033867	-	68	70.588	Pan_paniscus
ENSORLG00015021393	prpf38a	99	82.051	ENSPPRG00000013268	PRPF38A	96	82.000	Panthera_pardus
ENSORLG00015021393	prpf38a	99	82.051	ENSPTIG00000015419	PRPF38A	96	82.000	Panthera_tigris_altaica
ENSORLG00015021393	prpf38a	99	82.051	ENSPTRG00000000739	PRPF38A	96	82.000	Pan_troglodytes
ENSORLG00015021393	prpf38a	99	82.051	ENSPANG00000015483	PRPF38A	96	82.000	Papio_anubis
ENSORLG00015021393	prpf38a	100	92.233	ENSPKIG00000011439	prpf38a	96	92.568	Paramormyrops_kingsleyae
ENSORLG00015021393	prpf38a	99	80.769	ENSPSIG00000017487	PRPF38A	96	80.667	Pelodiscus_sinensis
ENSORLG00015021393	prpf38a	83	88.525	ENSPMGG00000021352	prpf38a	96	85.034	Periophthalmus_magnuspinnatus
ENSORLG00015021393	prpf38a	100	79.070	ENSPEMG00000011212	-	99	76.433	Peromyscus_maniculatus_bairdii
ENSORLG00015021393	prpf38a	99	82.051	ENSPEMG00000023277	-	96	82.000	Peromyscus_maniculatus_bairdii
ENSORLG00015021393	prpf38a	99	79.553	ENSPCIG00000022369	-	96	79.402	Phascolarctos_cinereus
ENSORLG00015021393	prpf38a	100	87.500	ENSPFOG00000004248	prpf38a	100	95.793	Poecilia_formosa
ENSORLG00015021393	prpf38a	96	83.333	ENSPLAG00000010328	prpf38a	100	95.793	Poecilia_latipinna
ENSORLG00015021393	prpf38a	96	83.333	ENSPMEG00000011804	prpf38a	100	95.793	Poecilia_mexicana
ENSORLG00015021393	prpf38a	99	80.872	ENSPREG00000002835	prpf38a	63	97.549	Poecilia_reticulata
ENSORLG00015021393	prpf38a	99	74.132	ENSPPYG00000001348	PRPF38A	96	73.770	Pongo_abelii
ENSORLG00015021393	prpf38a	99	81.731	ENSPCAG00000013328	PRPF38A	96	81.667	Procavia_capensis
ENSORLG00015021393	prpf38a	99	82.051	ENSPCOG00000016387	-	96	82.000	Propithecus_coquereli
ENSORLG00015021393	prpf38a	99	67.532	ENSPCOG00000020709	-	73	71.946	Propithecus_coquereli
ENSORLG00015021393	prpf38a	99	82.051	ENSPVAG00000009803	PRPF38A	96	82.000	Pteropus_vampyrus
ENSORLG00015021393	prpf38a	75	92.308	ENSPNYG00000005571	prpf38a	99	93.506	Pundamilia_nyererei
ENSORLG00015021393	prpf38a	99	83.333	ENSPNAG00000010399	prpf38a	99	85.256	Pygocentrus_nattereri
ENSORLG00015021393	prpf38a	99	82.372	ENSRNOG00000009451	Prpf38a	96	82.333	Rattus_norvegicus
ENSORLG00015021393	prpf38a	99	82.051	ENSRBIG00000036442	PRPF38A	100	81.940	Rhinopithecus_bieti
ENSORLG00015021393	prpf38a	100	55.184	ENSRBIG00000034053	-	67	74.590	Rhinopithecus_bieti
ENSORLG00015021393	prpf38a	99	82.051	ENSRROG00000032788	PRPF38A	96	82.000	Rhinopithecus_roxellana
ENSORLG00015021393	prpf38a	100	55.853	ENSRROG00000034606	-	95	76.230	Rhinopithecus_roxellana
ENSORLG00015021393	prpf38a	100	70.707	ENSRROG00000040003	-	74	71.806	Rhinopithecus_roxellana
ENSORLG00015021393	prpf38a	99	82.051	ENSSBOG00000019515	PRPF38A	96	82.000	Saimiri_boliviensis_boliviensis
ENSORLG00015021393	prpf38a	86	76.753	ENSSHAG00000006906	-	96	76.448	Sarcophilus_harrisii
ENSORLG00015021393	prpf38a	99	65.993	ENSSHAG00000006029	-	74	76.018	Sarcophilus_harrisii
ENSORLG00015021393	prpf38a	99	91.586	ENSSFOG00015013572	prpf38a	96	90.909	Scleropages_formosus
ENSORLG00015021393	prpf38a	75	94.570	ENSSMAG00000015379	prpf38a	96	94.276	Scophthalmus_maximus
ENSORLG00015021393	prpf38a	99	96.429	ENSSDUG00000001324	prpf38a	99	96.429	Seriola_dumerili
ENSORLG00015021393	prpf38a	99	96.429	ENSSLDG00000014803	prpf38a	99	96.429	Seriola_lalandi_dorsalis
ENSORLG00015021393	prpf38a	99	65.064	ENSSARG00000014458	PRPF38A	96	64.214	Sorex_araneus
ENSORLG00015021393	prpf38a	99	79.808	ENSSPUG00000013259	PRPF38A	96	79.667	Sphenodon_punctatus
ENSORLG00015021393	prpf38a	87	71.875	ENSSPAG00000010449	prpf38a	95	74.490	Stegastes_partitus
ENSORLG00015021393	prpf38a	99	82.051	ENSSSCG00000028288	PRPF38A	96	82.000	Sus_scrofa
ENSORLG00015021393	prpf38a	99	77.885	ENSTGUG00000008995	PRPF38A	96	77.667	Taeniopygia_guttata
ENSORLG00015021393	prpf38a	75	94.570	ENSTRUG00000003374	prpf38a	71	91.775	Takifugu_rubripes
ENSORLG00015021393	prpf38a	99	93.548	ENSTNIG00000005533	prpf38a	99	93.548	Tetraodon_nigroviridis
ENSORLG00015021393	prpf38a	99	81.410	ENSTBEG00000000725	PRPF38A	96	82.000	Tupaia_belangeri
ENSORLG00015021393	prpf38a	99	82.051	ENSTTRG00000016139	PRPF38A	96	82.000	Tursiops_truncatus
ENSORLG00015021393	prpf38a	99	82.051	ENSUAMG00000000625	PRPF38A	96	82.000	Ursus_americanus
ENSORLG00015021393	prpf38a	99	82.051	ENSUMAG00000022674	PRPF38A	96	82.000	Ursus_maritimus
ENSORLG00015021393	prpf38a	78	88.745	ENSVPAG00000000907	PRPF38A	71	89.593	Vicugna_pacos
ENSORLG00015021393	prpf38a	99	82.051	ENSVVUG00000004475	PRPF38A	96	82.000	Vulpes_vulpes
ENSORLG00015021393	prpf38a	99	80.831	ENSXETG00000008060	prpf38a	96	80.399	Xenopus_tropicalis
ENSORLG00015021393	prpf38a	76	94.248	ENSXCOG00000007393	prpf38a	96	87.248	Xiphophorus_couchianus
ENSORLG00015021393	prpf38a	75	96.380	ENSXMAG00000026143	prpf38a	100	95.793	Xiphophorus_maculatus