EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00015022240 (Gene tree)
Gene ID: -
Gene Symbol: patl1
Alias: -
Full Name: protein associated with topoisomerase II homolog 1 (yeast)
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 5102 bases
Position: chr1:595007-600108
Accession: ZDB-GENE-070209-83
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015021035	PAT1	PF09770.9	3.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015036263	-	2259	-	ENSORLP00015021035	753 (aa)	-	-

Gene Model

Click here to download ENSORLG00015022240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015022240's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00015022240	patl1	51	36.634	ENSORLG00015014500	patl2	54	36.294

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015022240	patl1	51	37.192	ENSG00000229474	PATL2	98	37.912	Homo_sapiens
ENSORLG00015022240	patl1	77	82.508	ENSAPOG00000021290	patl1	89	94.444	Acanthochromis_polyacanthus
ENSORLG00015022240	patl1	53	37.292	ENSAPOG00000022988	patl2	57	37.975	Acanthochromis_polyacanthus
ENSORLG00015022240	patl1	51	37.073	ENSAMEG00000014997	PATL2	75	37.376	Ailuropoda_melanoleuca
ENSORLG00015022240	patl1	77	81.178	ENSACIG00000005182	patl1	87	81.054	Amphilophus_citrinellus
ENSORLG00015022240	patl1	53	36.817	ENSAOCG00000023738	patl2	51	37.468	Amphiprion_ocellaris
ENSORLG00015022240	patl1	95	72.446	ENSAOCG00000021993	patl1	95	73.486	Amphiprion_ocellaris
ENSORLG00015022240	patl1	53	36.538	ENSAPEG00000011299	patl2	61	37.179	Amphiprion_percula
ENSORLG00015022240	patl1	51	37.469	ENSATEG00000019567	patl2	60	37.405	Anabas_testudineus
ENSORLG00015022240	patl1	77	82.702	ENSATEG00000002230	patl1	73	80.725	Anabas_testudineus
ENSORLG00015022240	patl1	59	35.477	ENSAPLG00000003980	PATL2	64	39.000	Anas_platyrhynchos
ENSORLG00015022240	patl1	53	46.908	ENSAPLG00000013394	PATL1	60	56.419	Anas_platyrhynchos
ENSORLG00015022240	patl1	53	37.116	ENSACLG00000010326	patl2	53	37.879	Astatotilapia_calliptera
ENSORLG00015022240	patl1	56	36.264	ENSAMXG00000020293	patl2	57	37.500	Astyanax_mexicanus
ENSORLG00015022240	patl1	83	65.385	ENSCJAG00000016192	PATL1	78	65.385	Callithrix_jacchus
ENSORLG00015022240	patl1	54	36.018	ENSCJAG00000002379	PATL2	72	36.675	Callithrix_jacchus
ENSORLG00015022240	patl1	50	38.119	ENSCAFG00000013629	PATL2	72	38.119	Canis_familiaris
ENSORLG00015022240	patl1	50	38.119	ENSCAFG00020022169	PATL2	72	38.119	Canis_lupus_dingo
ENSORLG00015022240	patl1	83	65.385	ENSCAFG00020001648	PATL1	79	65.385	Canis_lupus_dingo
ENSORLG00015022240	patl1	55	37.584	ENSCHIG00000026665	PATL2	73	39.066	Capra_hircus
ENSORLG00015022240	patl1	54	35.650	ENSTSYG00000032456	PATL2	72	36.855	Carlito_syrichta
ENSORLG00015022240	patl1	64	56.000	ENSCHOG00000001611	PATL1	81	56.000	Choloepus_hoffmanni
ENSORLG00015022240	patl1	56	38.170	ENSCPBG00000006150	PATL2	59	40.299	Chrysemys_picta_bellii
ENSORLG00015022240	patl1	51	37.376	ENSCANG00000013856	PATL2	72	38.060	Colobus_angolensis_palliatus
ENSORLG00015022240	patl1	56	35.141	ENSCGRG00001010801	Patl2	65	38.643	Cricetulus_griseus_chok1gshd
ENSORLG00015022240	patl1	56	35.141	ENSCGRG00000013007	Patl2	65	38.643	Cricetulus_griseus_crigri
ENSORLG00015022240	patl1	52	36.098	ENSCSEG00000009438	patl2	55	35.938	Cynoglossus_semilaevis
ENSORLG00015022240	patl1	76	79.933	ENSCSEG00000008261	patl1	84	80.769	Cynoglossus_semilaevis
ENSORLG00015022240	patl1	78	97.143	ENSCVAG00000006664	patl1	83	97.143	Cyprinodon_variegatus
ENSORLG00015022240	patl1	50	36.154	ENSCVAG00000016203	patl2	60	35.641	Cyprinodon_variegatus
ENSORLG00015022240	patl1	77	74.917	ENSDARG00000017423	patl1	78	73.877	Danio_rerio
ENSORLG00015022240	patl1	50	38.325	ENSDARG00000089567	patl2	55	38.579	Danio_rerio
ENSORLG00015022240	patl1	73	63.462	ENSDNOG00000038865	PATL1	75	52.392	Dasypus_novemcinctus
ENSORLG00015022240	patl1	85	65.385	ENSEASG00005007963	PATL1	80	65.385	Equus_asinus_asinus
ENSORLG00015022240	patl1	54	36.219	ENSEASG00005017984	PATL2	70	36.725	Equus_asinus_asinus
ENSORLG00015022240	patl1	54	35.535	ENSECAG00000013462	PATL2	71	37.129	Equus_caballus
ENSORLG00015022240	patl1	97	66.367	ENSELUG00000024249	patl1	77	75.410	Esox_lucius
ENSORLG00015022240	patl1	54	37.825	ENSELUG00000023244	patl2	54	38.228	Esox_lucius
ENSORLG00015022240	patl1	52	38.107	ENSFCAG00000027170	PATL2	73	38.366	Felis_catus
ENSORLG00015022240	patl1	61	35.516	ENSFALG00000009768	PATL2	55	38.653	Ficedula_albicollis
ENSORLG00015022240	patl1	77	85.479	ENSFHEG00000017790	patl1	75	85.149	Fundulus_heteroclitus
ENSORLG00015022240	patl1	51	36.049	ENSGMOG00000005666	patl2	98	34.815	Gadus_morhua
ENSORLG00015022240	patl1	100	74.442	ENSGAFG00000006508	patl1	75	84.488	Gambusia_affinis
ENSORLG00015022240	patl1	50	37.975	ENSGAFG00000019344	patl2	55	37.722	Gambusia_affinis
ENSORLG00015022240	patl1	51	37.101	ENSGGOG00000025923	PATL2	72	37.531	Gorilla_gorilla
ENSORLG00015022240	patl1	53	36.842	ENSHBUG00000005929	patl2	60	37.596	Haplochromis_burtoni
ENSORLG00015022240	patl1	84	94.444	ENSHCOG00000001898	patl1	80	89.831	Hippocampus_comes
ENSORLG00015022240	patl1	52	35.697	ENSHCOG00000016754	patl2	54	36.203	Hippocampus_comes
ENSORLG00015022240	patl1	50	37.340	ENSIPUG00000020692	patl2	56	38.010	Ictalurus_punctatus
ENSORLG00015022240	patl1	54	35.374	ENSSTOG00000033848	PATL2	72	36.881	Ictidomys_tridecemlineatus
ENSORLG00015022240	patl1	50	36.709	ENSKMAG00000021275	patl2	53	36.456	Kryptolebias_marmoratus
ENSORLG00015022240	patl1	50	38.579	ENSLBEG00000022344	patl2	52	38.325	Labrus_bergylta
ENSORLG00015022240	patl1	55	37.500	ENSLACG00000005291	-	52	39.558	Latimeria_chalumnae
ENSORLG00015022240	patl1	80	65.385	ENSLACG00000004640	PATL1	63	65.385	Latimeria_chalumnae
ENSORLG00015022240	patl1	77	67.258	ENSLOCG00000000717	patl1	78	65.909	Lepisosteus_oculatus
ENSORLG00015022240	patl1	51	35.680	ENSLAFG00000031124	PATL2	63	38.372	Loxodonta_africana
ENSORLG00015022240	patl1	50	35.787	ENSMAMG00000013327	patl2	60	35.550	Mastacembelus_armatus
ENSORLG00015022240	patl1	100	71.943	ENSMAMG00000003950	patl1	98	71.191	Mastacembelus_armatus
ENSORLG00015022240	patl1	53	37.116	ENSMZEG00005014292	patl2	53	37.879	Maylandia_zebra
ENSORLG00015022240	patl1	50	38.404	ENSMGAG00000001309	PATL2	64	39.552	Meleagris_gallopavo
ENSORLG00015022240	patl1	78	45.227	ENSMAUG00000012059	Patl1	74	50.000	Mesocricetus_auratus
ENSORLG00015022240	patl1	58	35.146	ENSMAUG00000001008	Patl2	75	36.591	Mesocricetus_auratus
ENSORLG00015022240	patl1	50	37.624	ENSMOCG00000015367	Patl2	72	38.010	Microtus_ochrogaster
ENSORLG00015022240	patl1	91	75.731	ENSMMOG00000013711	patl1	98	92.453	Mola_mola
ENSORLG00015022240	patl1	50	34.715	ENSMMOG00000001299	patl2	59	34.715	Mola_mola
ENSORLG00015022240	patl1	52	37.296	ENSMODG00000017690	PATL2	70	37.890	Monodelphis_domestica
ENSORLG00015022240	patl1	51	36.139	ENSMALG00000008131	patl2	51	36.294	Monopterus_albus
ENSORLG00015022240	patl1	77	78.024	ENSMALG00000018706	patl1	82	77.683	Monopterus_albus
ENSORLG00015022240	patl1	83	66.667	ENSNGAG00000003682	Patl1	60	66.667	Nannospalax_galili
ENSORLG00015022240	patl1	51	37.562	ENSNBRG00000011745	patl2	57	37.852	Neolamprologus_brichardi
ENSORLG00015022240	patl1	51	37.192	ENSNLEG00000005673	PATL2	73	37.624	Nomascus_leucogenys
ENSORLG00015022240	patl1	63	55.414	ENSMEUG00000009391	PATL1	73	55.063	Notamacropus_eugenii
ENSORLG00015022240	patl1	64	55.645	ENSOPRG00000007963	PATL1	74	55.645	Ochotona_princeps
ENSORLG00015022240	patl1	55	46.154	ENSODEG00000001792	PATL1	69	52.866	Octodon_degus
ENSORLG00015022240	patl1	80	90.385	ENSONIG00000004170	patl1	95	86.207	Oreochromis_niloticus
ENSORLG00015022240	patl1	50	37.722	ENSONIG00000011519	patl2	53	37.468	Oreochromis_niloticus
ENSORLG00015022240	patl1	51	35.577	ENSOANG00000001538	-	76	38.462	Ornithorhynchus_anatinus
ENSORLG00015022240	patl1	55	33.824	ENSOCUG00000006339	PATL2	64	38.968	Oryctolagus_cuniculus
ENSORLG00015022240	patl1	51	36.946	ENSORLG00000005780	patl2	54	36.616	Oryzias_latipes
ENSORLG00015022240	patl1	51	36.946	ENSORLG00020016506	patl2	52	36.616	Oryzias_latipes_hni
ENSORLG00015022240	patl1	51	37.531	ENSOMEG00000021628	patl2	56	37.215	Oryzias_melastigma
ENSORLG00015022240	patl1	51	36.765	ENSOGAG00000004709	PATL2	72	38.287	Otolemur_garnettii
ENSORLG00015022240	patl1	53	36.219	ENSOARG00000003762	PATL2	62	39.943	Ovis_aries
ENSORLG00015022240	patl1	51	37.346	ENSPPAG00000007221	PATL2	71	37.778	Pan_paniscus
ENSORLG00015022240	patl1	52	37.379	ENSPPRG00000004279	PATL2	73	37.624	Panthera_pardus
ENSORLG00015022240	patl1	52	37.379	ENSPTIG00000018964	PATL2	73	37.624	Panthera_tigris_altaica
ENSORLG00015022240	patl1	51	36.946	ENSPTRG00000041536	PATL2	71	37.376	Pan_troglodytes
ENSORLG00015022240	patl1	83	65.385	ENSPTRG00000003697	PATL1	90	65.385	Pan_troglodytes
ENSORLG00015022240	patl1	100	68.435	ENSPKIG00000016224	patl1	80	77.349	Paramormyrops_kingsleyae
ENSORLG00015022240	patl1	50	40.050	ENSPKIG00000016887	patl2	54	39.798	Paramormyrops_kingsleyae
ENSORLG00015022240	patl1	50	36.250	ENSPSIG00000017690	PATL2	96	35.533	Pelodiscus_sinensis
ENSORLG00015022240	patl1	100	72.414	ENSPMGG00000002644	patl1	78	80.667	Periophthalmus_magnuspinnatus
ENSORLG00015022240	patl1	50	35.294	ENSPMGG00000014550	patl2	62	35.038	Periophthalmus_magnuspinnatus
ENSORLG00015022240	patl1	57	36.105	ENSPCIG00000018256	PATL2	76	38.363	Phascolarctos_cinereus
ENSORLG00015022240	patl1	50	38.035	ENSPFOG00000007305	patl2	54	37.783	Poecilia_formosa
ENSORLG00015022240	patl1	100	73.350	ENSPFOG00000007768	patl1	98	73.724	Poecilia_formosa
ENSORLG00015022240	patl1	50	38.035	ENSPLAG00000020713	patl2	54	37.783	Poecilia_latipinna
ENSORLG00015022240	patl1	100	73.848	ENSPLAG00000018465	patl1	75	84.158	Poecilia_latipinna
ENSORLG00015022240	patl1	100	72.986	ENSPMEG00000006555	patl1	75	83.663	Poecilia_mexicana
ENSORLG00015022240	patl1	50	38.035	ENSPMEG00000018942	patl2	54	37.783	Poecilia_mexicana
ENSORLG00015022240	patl1	89	70.694	ENSPREG00000003874	patl1	71	82.700	Poecilia_reticulata
ENSORLG00015022240	patl1	51	37.864	ENSPCOG00000000295	PATL2	98	38.798	Propithecus_coquereli
ENSORLG00015022240	patl1	64	86.520	ENSPNYG00000018936	patl1	93	86.293	Pundamilia_nyererei
ENSORLG00015022240	patl1	53	36.364	ENSPNYG00000017381	patl2	60	36.990	Pundamilia_nyererei
ENSORLG00015022240	patl1	77	76.277	ENSPNAG00000017907	patl1	77	75.822	Pygocentrus_nattereri
ENSORLG00015022240	patl1	53	36.073	ENSPNAG00000002315	patl2	57	38.325	Pygocentrus_nattereri
ENSORLG00015022240	patl1	77	76.846	ENSSFOG00015009614	patl1	78	76.846	Scleropages_formosus
ENSORLG00015022240	patl1	50	38.945	ENSSFOG00015000720	patl2	55	39.798	Scleropages_formosus
ENSORLG00015022240	patl1	77	79.934	ENSSMAG00000009482	patl1	72	80.298	Scophthalmus_maximus
ENSORLG00015022240	patl1	53	35.629	ENSSMAG00000017262	patl2	63	35.806	Scophthalmus_maximus
ENSORLG00015022240	patl1	51	38.049	ENSSDUG00000022927	patl2	53	38.384	Seriola_dumerili
ENSORLG00015022240	patl1	90	80.196	ENSSDUG00000005362	patl1	82	89.655	Seriola_dumerili
ENSORLG00015022240	patl1	59	36.831	ENSSLDG00000017922	patl2	59	38.636	Seriola_lalandi_dorsalis
ENSORLG00015022240	patl1	90	80.033	ENSSLDG00000019146	patl1	82	87.931	Seriola_lalandi_dorsalis
ENSORLG00015022240	patl1	59	48.008	ENSSARG00000009600	PATL1	54	53.349	Sorex_araneus
ENSORLG00015022240	patl1	77	82.673	ENSSPAG00000003187	patl1	85	81.054	Stegastes_partitus
ENSORLG00015022240	patl1	51	36.855	ENSSPAG00000004784	patl2	61	36.869	Stegastes_partitus
ENSORLG00015022240	patl1	83	65.385	ENSSSCG00000013124	PATL1	78	65.385	Sus_scrofa
ENSORLG00015022240	patl1	50	35.969	ENSTRUG00000005647	patl2	56	35.641	Takifugu_rubripes
ENSORLG00015022240	patl1	99	65.256	ENSTRUG00000000709	patl1	79	82.692	Takifugu_rubripes
ENSORLG00015022240	patl1	73	59.615	ENSTBEG00000000796	PATL1	60	59.615	Tupaia_belangeri
ENSORLG00015022240	patl1	69	55.376	ENSTTRG00000009389	PATL1	79	55.376	Tursiops_truncatus
ENSORLG00015022240	patl1	51	36.829	ENSUAMG00000018533	PATL2	71	37.129	Ursus_americanus
ENSORLG00015022240	patl1	51	36.829	ENSUMAG00000007738	PATL2	71	37.129	Ursus_maritimus
ENSORLG00015022240	patl1	81	77.778	ENSUMAG00000018634	PATL1	79	77.778	Ursus_maritimus
ENSORLG00015022240	patl1	58	36.688	ENSVVUG00000011576	PATL2	72	38.670	Vulpes_vulpes
ENSORLG00015022240	patl1	83	65.385	ENSVVUG00000016668	PATL1	76	62.963	Vulpes_vulpes
ENSORLG00015022240	patl1	50	39.401	ENSXETG00000014167	patl2	67	38.741	Xenopus_tropicalis
ENSORLG00015022240	patl1	71	92.857	ENSXCOG00000010808	patl1	99	92.857	Xiphophorus_couchianus
ENSORLG00015022240	patl1	50	37.722	ENSXMAG00000018464	patl2	54	37.468	Xiphophorus_maculatus
ENSORLG00015022240	patl1	77	84.158	ENSXMAG00000013834	patl1	75	83.993	Xiphophorus_maculatus