EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015022425 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 5297 bases
Position: chr9:16451467-16456763
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015035691	SMN	PF06003.12	8.7e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015030617	-	1059	-	ENSORLP00015035691	283 (aa)	-	-

Gene Model

Click here to download ENSORLG00015022425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015022425's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015022425	smn1	94	52.030	ENSG00000205571	SMN2	92	50.000	Homo_sapiens
ENSORLG00015022425	smn1	94	52.030	ENSG00000172062	SMN1	92	50.000	Homo_sapiens
ENSORLG00015022425	smn1	100	78.799	ENSAPOG00000011324	smn1	100	78.799	Acanthochromis_polyacanthus
ENSORLG00015022425	smn1	54	60.256	ENSAMEG00000003316	-	52	60.256	Ailuropoda_melanoleuca
ENSORLG00015022425	smn1	59	76.190	ENSACIG00000007598	smn1	92	77.381	Amphilophus_citrinellus
ENSORLG00015022425	smn1	93	73.764	ENSACIG00000019772	-	99	73.764	Amphilophus_citrinellus
ENSORLG00015022425	smn1	100	78.799	ENSAOCG00000024444	smn1	100	78.799	Amphiprion_ocellaris
ENSORLG00015022425	smn1	100	79.152	ENSAPEG00000016504	smn1	100	79.152	Amphiprion_percula
ENSORLG00015022425	smn1	95	77.778	ENSATEG00000002182	smn1	82	77.778	Anabas_testudineus
ENSORLG00015022425	smn1	98	52.431	ENSACAG00000010017	-	96	50.347	Anolis_carolinensis
ENSORLG00015022425	smn1	96	39.146	ENSANAG00000032133	-	95	48.252	Aotus_nancymaae
ENSORLG00015022425	smn1	99	76.325	ENSACLG00000007308	smn1	94	75.618	Astatotilapia_calliptera
ENSORLG00015022425	smn1	100	65.493	ENSAMXG00000013884	smn1	100	65.493	Astyanax_mexicanus
ENSORLG00015022425	smn1	94	51.852	ENSBTAG00000005743	SMN2	81	46.743	Bos_taurus
ENSORLG00015022425	smn1	94	50.554	ENSCJAG00000016290	-	92	53.818	Callithrix_jacchus
ENSORLG00015022425	smn1	94	51.254	ENSCAFG00000007812	SMN	54	59.615	Canis_familiaris
ENSORLG00015022425	smn1	94	51.254	ENSCAFG00020019229	-	50	59.615	Canis_lupus_dingo
ENSORLG00015022425	smn1	94	51.471	ENSCHIG00000015559	-	91	50.554	Capra_hircus
ENSORLG00015022425	smn1	94	53.137	ENSTSYG00000012058	-	61	61.392	Carlito_syrichta
ENSORLG00015022425	smn1	73	45.238	ENSCAPG00000011021	-	88	44.498	Cavia_aperea
ENSORLG00015022425	smn1	94	50.730	ENSCPOG00000036973	-	53	58.491	Cavia_porcellus
ENSORLG00015022425	smn1	94	49.104	ENSCPOG00000012328	-	92	50.000	Cavia_porcellus
ENSORLG00015022425	smn1	94	46.667	ENSCCAG00000018127	-	91	49.265	Cebus_capucinus
ENSORLG00015022425	smn1	94	51.661	ENSCATG00000037002	-	92	49.814	Cercocebus_atys
ENSORLG00015022425	smn1	94	50.000	ENSCLAG00000000284	-	60	55.689	Chinchilla_lanigera
ENSORLG00015022425	smn1	94	52.381	ENSCSAG00000015688	-	54	57.927	Chlorocebus_sabaeus
ENSORLG00015022425	smn1	51	57.534	ENSCHOG00000007346	-	58	57.534	Choloepus_hoffmanni
ENSORLG00015022425	smn1	96	49.286	ENSCPBG00000010968	-	97	52.045	Chrysemys_picta_bellii
ENSORLG00015022425	smn1	92	50.000	ENSCANG00000033324	-	60	56.962	Colobus_angolensis_palliatus
ENSORLG00015022425	smn1	94	52.399	ENSCANG00000038242	-	60	57.927	Colobus_angolensis_palliatus
ENSORLG00015022425	smn1	94	52.313	ENSCGRG00001017959	-	93	50.186	Cricetulus_griseus_chok1gshd
ENSORLG00015022425	smn1	69	45.000	ENSCGRG00001016998	-	91	41.045	Cricetulus_griseus_chok1gshd
ENSORLG00015022425	smn1	94	52.313	ENSCGRG00000007698	Smn1	93	50.186	Cricetulus_griseus_crigri
ENSORLG00015022425	smn1	96	64.664	ENSCSEG00000015227	smn1	99	62.411	Cynoglossus_semilaevis
ENSORLG00015022425	smn1	100	78.169	ENSCVAG00000007498	smn1	100	78.169	Cyprinodon_variegatus
ENSORLG00015022425	smn1	100	63.986	ENSDARG00000018494	smn1	100	59.298	Danio_rerio
ENSORLG00015022425	smn1	94	41.993	ENSDORG00000007082	Smn1	53	47.097	Dipodomys_ordii
ENSORLG00015022425	smn1	54	52.229	ENSETEG00000001406	-	75	52.229	Echinops_telfairi
ENSORLG00015022425	smn1	96	37.415	ENSEBUG00000011902	smn1	67	39.487	Eptatretus_burgeri
ENSORLG00015022425	smn1	89	46.275	ENSEASG00005018000	-	50	52.381	Equus_asinus_asinus
ENSORLG00015022425	smn1	94	51.111	ENSECAG00000015215	-	54	59.615	Equus_caballus
ENSORLG00015022425	smn1	88	50.575	ENSEEUG00000015777	-	100	47.710	Erinaceus_europaeus
ENSORLG00015022425	smn1	100	65.845	ENSELUG00000018067	smn1	100	61.837	Esox_lucius
ENSORLG00015022425	smn1	94	52.381	ENSFCAG00000028292	SMN	60	60.000	Felis_catus
ENSORLG00015022425	smn1	95	53.261	ENSFALG00000012320	-	52	61.644	Ficedula_albicollis
ENSORLG00015022425	smn1	94	48.175	ENSFDAG00000017683	-	54	56.442	Fukomys_damarensis
ENSORLG00015022425	smn1	97	80.072	ENSFHEG00000018508	smn1	100	79.710	Fundulus_heteroclitus
ENSORLG00015022425	smn1	100	62.105	ENSGMOG00000017279	smn1	98	57.244	Gadus_morhua
ENSORLG00015022425	smn1	95	54.982	ENSGALG00000002430	SMN	56	59.740	Gallus_gallus
ENSORLG00015022425	smn1	100	81.272	ENSGAFG00000009501	smn1	100	81.272	Gambusia_affinis
ENSORLG00015022425	smn1	100	77.465	ENSGACG00000010584	smn1	97	77.113	Gasterosteus_aculeatus
ENSORLG00015022425	smn1	70	39.109	ENSGAGG00000013639	-	71	42.718	Gopherus_agassizii
ENSORLG00015022425	smn1	55	59.259	ENSGAGG00000011374	-	95	53.901	Gopherus_agassizii
ENSORLG00015022425	smn1	54	60.127	ENSGGOG00000003872	-	64	57.317	Gorilla_gorilla
ENSORLG00015022425	smn1	54	60.127	ENSGGOG00000026704	-	74	57.317	Gorilla_gorilla
ENSORLG00015022425	smn1	100	78.799	ENSHBUG00000013987	smn1	100	78.092	Haplochromis_burtoni
ENSORLG00015022425	smn1	94	47.080	ENSHGLG00000001905	-	54	55.484	Heterocephalus_glaber_female
ENSORLG00015022425	smn1	94	48.772	ENSHGLG00000001018	-	54	57.143	Heterocephalus_glaber_female
ENSORLG00015022425	smn1	92	46.992	ENSHGLG00100018676	-	56	55.484	Heterocephalus_glaber_male
ENSORLG00015022425	smn1	94	48.772	ENSHGLG00100011252	-	54	57.143	Heterocephalus_glaber_male
ENSORLG00015022425	smn1	94	72.830	ENSHCOG00000017136	smn1	89	73.208	Hippocampus_comes
ENSORLG00015022425	smn1	100	63.415	ENSIPUG00000012580	smn1	89	64.685	Ictalurus_punctatus
ENSORLG00015022425	smn1	91	50.951	ENSSTOG00000012288	-	56	59.740	Ictidomys_tridecemlineatus
ENSORLG00015022425	smn1	50	51.049	ENSJJAG00000014853	-	87	50.000	Jaculus_jaculus
ENSORLG00015022425	smn1	100	76.573	ENSKMAG00000007239	smn1	100	74.913	Kryptolebias_marmoratus
ENSORLG00015022425	smn1	100	80.634	ENSLBEG00000022550	smn1	100	80.634	Labrus_bergylta
ENSORLG00015022425	smn1	97	34.343	ENSLACG00000009808	-	92	38.163	Latimeria_chalumnae
ENSORLG00015022425	smn1	100	53.287	ENSLOCG00000011339	smn1	100	53.310	Lepisosteus_oculatus
ENSORLG00015022425	smn1	98	30.822	ENSLOCG00000000801	-	94	30.405	Lepisosteus_oculatus
ENSORLG00015022425	smn1	94	51.079	ENSLAFG00000003425	-	53	58.642	Loxodonta_africana
ENSORLG00015022425	smn1	94	48.708	ENSMFAG00000008812	-	54	54.268	Macaca_fascicularis
ENSORLG00015022425	smn1	94	52.747	ENSMFAG00000031523	SMN1	95	48.889	Macaca_fascicularis
ENSORLG00015022425	smn1	94	47.970	ENSMMUG00000030594	-	54	53.659	Macaca_mulatta
ENSORLG00015022425	smn1	94	52.747	ENSMMUG00000020214	SMN1	92	50.558	Macaca_mulatta
ENSORLG00015022425	smn1	94	52.747	ENSMNEG00000035094	-	92	50.558	Macaca_nemestrina
ENSORLG00015022425	smn1	76	39.367	ENSMNEG00000036423	-	70	38.333	Macaca_nemestrina
ENSORLG00015022425	smn1	94	52.747	ENSMLEG00000041902	-	93	50.558	Mandrillus_leucophaeus
ENSORLG00015022425	smn1	100	79.930	ENSMAMG00000011034	smn1	100	79.930	Mastacembelus_armatus
ENSORLG00015022425	smn1	100	79.152	ENSMZEG00005013634	smn1	100	78.445	Maylandia_zebra
ENSORLG00015022425	smn1	59	56.140	ENSMAUG00000010262	Smn1	93	49.071	Mesocricetus_auratus
ENSORLG00015022425	smn1	54	60.127	ENSMICG00000034708	-	71	60.127	Microcebus_murinus
ENSORLG00015022425	smn1	94	52.330	ENSMOCG00000017833	Smn1	92	50.000	Microtus_ochrogaster
ENSORLG00015022425	smn1	96	66.667	ENSMMOG00000005504	smn1	98	69.565	Mola_mola
ENSORLG00015022425	smn1	94	53.846	ENSMODG00000001436	-	59	56.805	Monodelphis_domestica
ENSORLG00015022425	smn1	100	80.986	ENSMALG00000008025	smn1	100	80.986	Monopterus_albus
ENSORLG00015022425	smn1	94	54.074	MGP_CAROLIEiJ_G0018836	Smn1	93	50.929	Mus_caroli
ENSORLG00015022425	smn1	94	53.704	ENSMUSG00000021645	Smn1	93	50.558	Mus_musculus
ENSORLG00015022425	smn1	94	55.019	MGP_PahariEiJ_G0015911	Smn1	93	53.333	Mus_pahari
ENSORLG00015022425	smn1	94	53.333	MGP_SPRETEiJ_G0019718	Smn1	93	50.186	Mus_spretus
ENSORLG00015022425	smn1	54	59.873	ENSMPUG00000014470	-	56	59.873	Mustela_putorius_furo
ENSORLG00015022425	smn1	94	51.812	ENSMLUG00000010603	-	50	60.256	Myotis_lucifugus
ENSORLG00015022425	smn1	94	51.471	ENSNGAG00000019833	Smn1	93	49.270	Nannospalax_galili
ENSORLG00015022425	smn1	100	80.565	ENSNBRG00000023000	smn1	100	80.565	Neolamprologus_brichardi
ENSORLG00015022425	smn1	94	52.399	ENSNLEG00000004454	-	92	50.370	Nomascus_leucogenys
ENSORLG00015022425	smn1	88	51.341	ENSOPRG00000002015	-	58	60.544	Ochotona_princeps
ENSORLG00015022425	smn1	91	48.473	ENSODEG00000015976	-	54	56.410	Octodon_degus
ENSORLG00015022425	smn1	100	80.212	ENSONIG00000011799	smn1	100	80.212	Oreochromis_niloticus
ENSORLG00015022425	smn1	94	52.555	ENSOANG00000001626	-	57	55.346	Ornithorhynchus_anatinus
ENSORLG00015022425	smn1	94	51.246	ENSOCUG00000026649	-	56	57.407	Oryctolagus_cuniculus
ENSORLG00015022425	smn1	94	51.449	ENSOCUG00000017097	-	55	58.974	Oryctolagus_cuniculus
ENSORLG00015022425	smn1	100	96.820	ENSORLG00000010552	smn1	100	96.820	Oryzias_latipes
ENSORLG00015022425	smn1	100	87.324	ENSORLG00020007936	smn1	100	87.324	Oryzias_latipes_hni
ENSORLG00015022425	smn1	100	90.813	ENSOMEG00000007824	smn1	100	90.813	Oryzias_melastigma
ENSORLG00015022425	smn1	91	47.566	ENSOGAG00000031414	-	92	45.788	Otolemur_garnettii
ENSORLG00015022425	smn1	94	50.741	ENSOARG00000005425	-	97	46.097	Ovis_aries
ENSORLG00015022425	smn1	94	52.030	ENSPPAG00000036640	-	92	50.000	Pan_paniscus
ENSORLG00015022425	smn1	94	51.648	ENSPPRG00000005575	-	60	60.000	Panthera_pardus
ENSORLG00015022425	smn1	94	52.381	ENSPTIG00000007745	-	93	51.460	Panthera_tigris_altaica
ENSORLG00015022425	smn1	54	60.127	ENSPTRG00000016955	-	60	57.317	Pan_troglodytes
ENSORLG00015022425	smn1	94	49.446	ENSPANG00000000253	-	58	54.878	Papio_anubis
ENSORLG00015022425	smn1	94	52.747	ENSPANG00000013601	-	91	50.360	Papio_anubis
ENSORLG00015022425	smn1	100	57.895	ENSPKIG00000011096	smn1	100	58.741	Paramormyrops_kingsleyae
ENSORLG00015022425	smn1	92	53.184	ENSPSIG00000014787	-	86	50.000	Pelodiscus_sinensis
ENSORLG00015022425	smn1	100	66.202	ENSPMGG00000012285	smn1	97	70.849	Periophthalmus_magnuspinnatus
ENSORLG00015022425	smn1	92	39.568	ENSPMAG00000005004	smn1	91	39.259	Petromyzon_marinus
ENSORLG00015022425	smn1	96	53.873	ENSPCIG00000025764	-	59	55.357	Phascolarctos_cinereus
ENSORLG00015022425	smn1	100	80.565	ENSPFOG00000007786	smn1	100	80.565	Poecilia_formosa
ENSORLG00015022425	smn1	100	80.919	ENSPLAG00000012071	smn1	100	80.919	Poecilia_latipinna
ENSORLG00015022425	smn1	100	80.565	ENSPMEG00000017085	smn1	100	80.565	Poecilia_mexicana
ENSORLG00015022425	smn1	100	80.565	ENSPREG00000005824	smn1	100	80.565	Poecilia_reticulata
ENSORLG00015022425	smn1	92	51.136	ENSPPYG00000015533	-	55	58.940	Pongo_abelii
ENSORLG00015022425	smn1	61	73.077	ENSPPYG00000019189	-	77	49.007	Pongo_abelii
ENSORLG00015022425	smn1	91	51.493	ENSPCAG00000004187	-	56	57.616	Procavia_capensis
ENSORLG00015022425	smn1	54	60.897	ENSPVAG00000005977	-	53	60.897	Pteropus_vampyrus
ENSORLG00015022425	smn1	100	80.565	ENSPNYG00000014148	smn1	100	80.565	Pundamilia_nyererei
ENSORLG00015022425	smn1	100	64.561	ENSPNAG00000014007	smn1	87	60.563	Pygocentrus_nattereri
ENSORLG00015022425	smn1	95	53.309	ENSRNOG00000018067	Smn1	93	49.446	Rattus_norvegicus
ENSORLG00015022425	smn1	94	52.381	ENSRBIG00000037052	-	60	57.927	Rhinopithecus_bieti
ENSORLG00015022425	smn1	92	48.669	ENSRBIG00000036775	-	58	59.494	Rhinopithecus_bieti
ENSORLG00015022425	smn1	94	45.421	ENSRROG00000031088	-	60	58.065	Rhinopithecus_roxellana
ENSORLG00015022425	smn1	94	52.381	ENSRROG00000039399	-	60	57.927	Rhinopithecus_roxellana
ENSORLG00015022425	smn1	52	56.000	ENSSBOG00000020112	-	52	54.487	Saimiri_boliviensis_boliviensis
ENSORLG00015022425	smn1	94	50.923	ENSSBOG00000011665	-	60	61.392	Saimiri_boliviensis_boliviensis
ENSORLG00015022425	smn1	96	53.873	ENSSHAG00000001499	-	58	55.696	Sarcophilus_harrisii
ENSORLG00015022425	smn1	100	63.158	ENSSFOG00015015507	smn1	100	57.746	Scleropages_formosus
ENSORLG00015022425	smn1	100	74.205	ENSSMAG00000007922	smn1	100	76.678	Scophthalmus_maximus
ENSORLG00015022425	smn1	100	80.986	ENSSDUG00000018533	smn1	100	80.986	Seriola_dumerili
ENSORLG00015022425	smn1	100	81.338	ENSSLDG00000021135	smn1	100	81.338	Seriola_lalandi_dorsalis
ENSORLG00015022425	smn1	97	55.160	ENSSPUG00000000373	-	99	50.173	Sphenodon_punctatus
ENSORLG00015022425	smn1	100	79.152	ENSSPAG00000004345	smn1	100	79.152	Stegastes_partitus
ENSORLG00015022425	smn1	94	52.574	ENSSSCG00000016970	-	53	60.897	Sus_scrofa
ENSORLG00015022425	smn1	57	58.333	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSORLG00015022425	smn1	91	52.632	ENSTGUG00000001548	-	95	48.315	Taeniopygia_guttata
ENSORLG00015022425	smn1	100	65.371	ENSTRUG00000000736	smn	100	63.251	Takifugu_rubripes
ENSORLG00015022425	smn1	100	64.828	ENSTNIG00000009892	smn1	100	64.483	Tetraodon_nigroviridis
ENSORLG00015022425	smn1	54	61.146	ENSTBEG00000002399	-	76	61.146	Tupaia_belangeri
ENSORLG00015022425	smn1	54	59.615	ENSTTRG00000005080	-	54	59.615	Tursiops_truncatus
ENSORLG00015022425	smn1	54	59.615	ENSUAMG00000024947	-	57	59.615	Ursus_americanus
ENSORLG00015022425	smn1	60	77.778	ENSVPAG00000009887	-	62	82.609	Vicugna_pacos
ENSORLG00015022425	smn1	94	51.254	ENSVVUG00000006934	-	54	59.615	Vulpes_vulpes
ENSORLG00015022425	smn1	87	34.221	ENSXETG00000004912	-	82	59.322	Xenopus_tropicalis
ENSORLG00015022425	smn1	95	55.036	ENSXETG00000018189	smn2	95	51.399	Xenopus_tropicalis
ENSORLG00015022425	smn1	100	79.859	ENSXMAG00000001521	smn1	100	79.859	Xiphophorus_maculatus