EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00015022523 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oryzias_latipes_hsok
Status: putative
Strand: Minus strand
Length: 20405 bases
Position: chr17:20384038-20404442
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00015021249	XRN_N	PF03159.18	1.6e-95	1	1
ENSORLP00015021286	XRN_N	PF03159.18	1.7e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00015036389	-	5337	-	ENSORLP00015021286	1689 (aa)	-	-
ENSORLT00015030655	-	4725	-	ENSORLP00015021249	1574 (aa)	-	-

Gene Model

Click here to download ENSORLG00015022523's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00015022523's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00015022523	xrn1	100	61.035	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSORLG00015022523	xrn1	99	79.755	ENSAPOG00000000622	xrn1	93	85.897	Acanthochromis_polyacanthus
ENSORLG00015022523	xrn1	89	72.125	ENSAMEG00000012538	XRN1	100	60.970	Ailuropoda_melanoleuca
ENSORLG00015022523	xrn1	100	79.882	ENSACIG00000001057	xrn1	98	86.803	Amphilophus_citrinellus
ENSORLG00015022523	xrn1	100	79.779	ENSAOCG00000014097	xrn1	100	79.779	Amphiprion_ocellaris
ENSORLG00015022523	xrn1	100	81.326	ENSAPEG00000006620	xrn1	100	81.559	Amphiprion_percula
ENSORLG00015022523	xrn1	100	74.630	ENSATEG00000009752	xrn1	100	74.630	Anabas_testudineus
ENSORLG00015022523	xrn1	98	62.835	ENSAPLG00000004905	XRN1	100	60.342	Anas_platyrhynchos
ENSORLG00015022523	xrn1	100	60.389	ENSACAG00000004985	XRN1	100	70.753	Anolis_carolinensis
ENSORLG00015022523	xrn1	100	60.966	ENSANAG00000029013	XRN1	99	73.898	Aotus_nancymaae
ENSORLG00015022523	xrn1	100	81.823	ENSACLG00000004806	xrn1	99	81.823	Astatotilapia_calliptera
ENSORLG00015022523	xrn1	100	68.390	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSORLG00015022523	xrn1	100	61.243	ENSBTAG00000011524	XRN1	100	61.070	Bos_taurus
ENSORLG00015022523	xrn1	76	38.555	WBGene00012730	xrn-1	89	36.301	Caenorhabditis_elegans
ENSORLG00015022523	xrn1	100	60.988	ENSCJAG00000001872	XRN1	100	61.298	Callithrix_jacchus
ENSORLG00015022523	xrn1	89	72.472	ENSCAFG00000007783	XRN1	100	60.654	Canis_familiaris
ENSORLG00015022523	xrn1	89	72.472	ENSCAFG00020009120	XRN1	99	76.461	Canis_lupus_dingo
ENSORLG00015022523	xrn1	89	72.218	ENSCHIG00000019192	XRN1	99	61.202	Capra_hircus
ENSORLG00015022523	xrn1	100	60.949	ENSTSYG00000002705	XRN1	100	61.209	Carlito_syrichta
ENSORLG00015022523	xrn1	59	62.171	ENSCAPG00000004604	-	99	62.871	Cavia_aperea
ENSORLG00015022523	xrn1	100	61.246	ENSCCAG00000034800	XRN1	99	78.730	Cebus_capucinus
ENSORLG00015022523	xrn1	96	62.300	ENSCATG00000041794	XRN1	100	61.136	Cercocebus_atys
ENSORLG00015022523	xrn1	100	61.351	ENSCLAG00000001451	XRN1	99	78.730	Chinchilla_lanigera
ENSORLG00015022523	xrn1	96	62.806	ENSCSAG00000011265	XRN1	100	60.745	Chlorocebus_sabaeus
ENSORLG00015022523	xrn1	53	94.805	ENSCHOG00000013961	-	54	95.833	Choloepus_hoffmanni
ENSORLG00015022523	xrn1	75	51.524	ENSCSAVG00000008584	-	93	51.524	Ciona_savignyi
ENSORLG00015022523	xrn1	96	62.241	ENSCANG00000037495	XRN1	99	78.730	Colobus_angolensis_palliatus
ENSORLG00015022523	xrn1	89	72.138	ENSCGRG00001019411	Xrn1	99	78.730	Cricetulus_griseus_chok1gshd
ENSORLG00015022523	xrn1	89	72.138	ENSCGRG00000012464	Xrn1	99	78.730	Cricetulus_griseus_crigri
ENSORLG00015022523	xrn1	100	69.404	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSORLG00015022523	xrn1	71	85.829	ENSCVAG00000013089	xrn1	99	85.829	Cyprinodon_variegatus
ENSORLG00015022523	xrn1	100	68.897	ENSDARG00000091652	xrn1	98	82.068	Danio_rerio
ENSORLG00015022523	xrn1	100	60.529	ENSDORG00000013833	Xrn1	100	60.936	Dipodomys_ordii
ENSORLG00015022523	xrn1	74	42.422	FBgn0020261	pcm	72	41.811	Drosophila_melanogaster
ENSORLG00015022523	xrn1	86	66.667	ENSETEG00000003978	XRN1	88	67.769	Echinops_telfairi
ENSORLG00015022523	xrn1	85	83.333	ENSEASG00005002687	XRN1	98	81.081	Equus_asinus_asinus
ENSORLG00015022523	xrn1	95	62.367	ENSECAG00000008301	XRN1	100	60.894	Equus_caballus
ENSORLG00015022523	xrn1	89	81.469	ENSEEUG00000011323	XRN1	89	81.469	Erinaceus_europaeus
ENSORLG00015022523	xrn1	100	70.888	ENSELUG00000000169	xrn1	100	70.946	Esox_lucius
ENSORLG00015022523	xrn1	96	59.429	ENSFCAG00000027589	XRN1	99	80.044	Felis_catus
ENSORLG00015022523	xrn1	98	71.073	ENSFALG00000007021	XRN1	94	71.073	Ficedula_albicollis
ENSORLG00015022523	xrn1	89	71.910	ENSFDAG00000020494	XRN1	99	78.889	Fukomys_damarensis
ENSORLG00015022523	xrn1	90	74.631	ENSGMOG00000006396	xrn1	88	74.877	Gadus_morhua
ENSORLG00015022523	xrn1	99	71.540	ENSGALG00000002706	XRN1	95	71.384	Gallus_gallus
ENSORLG00015022523	xrn1	97	83.974	ENSGACG00000014328	xrn1	100	72.418	Gasterosteus_aculeatus
ENSORLG00015022523	xrn1	93	71.085	ENSGAGG00000017535	XRN1	95	71.085	Gopherus_agassizii
ENSORLG00015022523	xrn1	100	61.149	ENSGGOG00000008047	XRN1	100	60.991	Gorilla_gorilla
ENSORLG00015022523	xrn1	99	80.229	ENSHBUG00000005908	xrn1	95	83.686	Haplochromis_burtoni
ENSORLG00015022523	xrn1	89	72.472	ENSHGLG00000014476	XRN1	99	78.730	Heterocephalus_glaber_female
ENSORLG00015022523	xrn1	89	72.472	ENSHGLG00100015130	XRN1	99	78.730	Heterocephalus_glaber_male
ENSORLG00015022523	xrn1	100	74.150	ENSHCOG00000014062	xrn1	94	74.237	Hippocampus_comes
ENSORLG00015022523	xrn1	100	70.458	ENSIPUG00000015229	xrn1	100	68.801	Ictalurus_punctatus
ENSORLG00015022523	xrn1	89	72.218	ENSSTOG00000013552	XRN1	99	78.730	Ictidomys_tridecemlineatus
ENSORLG00015022523	xrn1	87	71.604	ENSJJAG00000010863	Xrn1	99	78.017	Jaculus_jaculus
ENSORLG00015022523	xrn1	100	77.719	ENSKMAG00000021356	xrn1	95	87.312	Kryptolebias_marmoratus
ENSORLG00015022523	xrn1	100	76.847	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSORLG00015022523	xrn1	100	61.530	ENSLACG00000009020	XRN1	100	61.020	Latimeria_chalumnae
ENSORLG00015022523	xrn1	100	74.424	ENSLOCG00000007944	xrn1	99	74.846	Lepisosteus_oculatus
ENSORLG00015022523	xrn1	66	73.226	ENSLAFG00000015426	XRN1	99	73.596	Loxodonta_africana
ENSORLG00015022523	xrn1	96	62.300	ENSMFAG00000032599	XRN1	100	61.136	Macaca_fascicularis
ENSORLG00015022523	xrn1	96	62.300	ENSMMUG00000014038	XRN1	100	61.136	Macaca_mulatta
ENSORLG00015022523	xrn1	89	72.298	ENSMNEG00000034217	XRN1	100	61.080	Macaca_nemestrina
ENSORLG00015022523	xrn1	100	76.120	ENSMAMG00000013219	xrn1	92	88.769	Mastacembelus_armatus
ENSORLG00015022523	xrn1	100	81.765	ENSMZEG00005015099	xrn1	99	81.765	Maylandia_zebra
ENSORLG00015022523	xrn1	95	70.789	ENSMGAG00000006333	XRN1	100	60.159	Meleagris_gallopavo
ENSORLG00015022523	xrn1	100	61.250	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSORLG00015022523	xrn1	61	78.481	ENSMOCG00000008665	Xrn1	99	78.730	Microtus_ochrogaster
ENSORLG00015022523	xrn1	100	60.466	ENSMODG00000021236	XRN1	100	59.989	Monodelphis_domestica
ENSORLG00015022523	xrn1	100	75.627	ENSMALG00000004098	xrn1	100	75.935	Monopterus_albus
ENSORLG00015022523	xrn1	96	77.673	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSORLG00015022523	xrn1	89	72.231	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSORLG00015022523	xrn1	89	72.209	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSORLG00015022523	xrn1	89	72.151	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSORLG00015022523	xrn1	92	65.553	ENSMPUG00000012040	XRN1	100	60.779	Mustela_putorius_furo
ENSORLG00015022523	xrn1	89	72.325	ENSMLUG00000016885	XRN1	100	60.704	Myotis_lucifugus
ENSORLG00015022523	xrn1	61	74.286	ENSNGAG00000023964	Xrn1	99	74.762	Nannospalax_galili
ENSORLG00015022523	xrn1	96	62.241	ENSNLEG00000004726	XRN1	100	61.057	Nomascus_leucogenys
ENSORLG00015022523	xrn1	65	96.907	ENSMEUG00000014473	-	64	97.087	Notamacropus_eugenii
ENSORLG00015022523	xrn1	70	68.102	ENSOPRG00000007337	-	71	68.421	Ochotona_princeps
ENSORLG00015022523	xrn1	98	86.911	ENSONIG00000016673	xrn1	99	84.032	Oreochromis_niloticus
ENSORLG00015022523	xrn1	89	68.999	ENSOANG00000006735	XRN1	94	67.591	Ornithorhynchus_anatinus
ENSORLG00015022523	xrn1	96	72.975	ENSOCUG00000001861	XRN1	100	61.145	Oryctolagus_cuniculus
ENSORLG00015022523	xrn1	100	99.171	ENSORLG00000013005	xrn1	98	99.171	Oryzias_latipes
ENSORLG00015022523	xrn1	100	99.053	ENSORLG00020005559	xrn1	100	99.053	Oryzias_latipes_hni
ENSORLG00015022523	xrn1	100	93.609	ENSOMEG00000015397	xrn1	100	94.828	Oryzias_melastigma
ENSORLG00015022523	xrn1	100	59.209	ENSOGAG00000000170	XRN1	100	58.807	Otolemur_garnettii
ENSORLG00015022523	xrn1	89	72.298	ENSOARG00000006343	XRN1	99	61.061	Ovis_aries
ENSORLG00015022523	xrn1	100	60.894	ENSPPAG00000010180	XRN1	100	61.035	Pan_paniscus
ENSORLG00015022523	xrn1	95	63.268	ENSPPRG00000007125	XRN1	100	61.469	Panthera_pardus
ENSORLG00015022523	xrn1	96	63.139	ENSPTIG00000021081	XRN1	100	61.469	Panthera_tigris_altaica
ENSORLG00015022523	xrn1	100	60.894	ENSPTRG00000015482	XRN1	100	61.035	Pan_troglodytes
ENSORLG00015022523	xrn1	100	61.080	ENSPANG00000010638	XRN1	100	61.080	Papio_anubis
ENSORLG00015022523	xrn1	98	70.833	ENSPSIG00000018050	XRN1	100	61.287	Pelodiscus_sinensis
ENSORLG00015022523	xrn1	61	87.460	ENSPMGG00000002648	xrn1	99	87.460	Periophthalmus_magnuspinnatus
ENSORLG00015022523	xrn1	61	78.357	ENSPEMG00000020610	Xrn1	99	78.889	Peromyscus_maniculatus_bairdii
ENSORLG00015022523	xrn1	70	50.253	ENSPMAG00000002975	xrn1	99	50.296	Petromyzon_marinus
ENSORLG00015022523	xrn1	91	73.222	ENSPCIG00000028735	XRN1	99	78.219	Phascolarctos_cinereus
ENSORLG00015022523	xrn1	90	81.465	ENSPFOG00000013932	xrn1	99	81.854	Poecilia_formosa
ENSORLG00015022523	xrn1	90	81.925	ENSPLAG00000021653	xrn1	99	81.990	Poecilia_latipinna
ENSORLG00015022523	xrn1	93	78.417	ENSPMEG00000003076	xrn1	95	82.326	Poecilia_mexicana
ENSORLG00015022523	xrn1	100	79.441	ENSPREG00000021147	xrn1	100	79.965	Poecilia_reticulata
ENSORLG00015022523	xrn1	100	61.627	ENSPPYG00000014172	XRN1	100	60.656	Pongo_abelii
ENSORLG00015022523	xrn1	87	67.984	ENSPCAG00000005638	XRN1	89	67.901	Procavia_capensis
ENSORLG00015022523	xrn1	100	61.455	ENSPCOG00000013089	XRN1	99	78.571	Propithecus_coquereli
ENSORLG00015022523	xrn1	83	70.873	ENSPVAG00000016265	XRN1	82	84.971	Pteropus_vampyrus
ENSORLG00015022523	xrn1	100	80.292	ENSPNYG00000010570	xrn1	99	80.292	Pundamilia_nyererei
ENSORLG00015022523	xrn1	100	67.876	ENSPNAG00000023531	xrn1	100	67.974	Pygocentrus_nattereri
ENSORLG00015022523	xrn1	89	72.058	ENSRNOG00000042951	Xrn1	100	60.934	Rattus_norvegicus
ENSORLG00015022523	xrn1	89	72.298	ENSRBIG00000041227	XRN1	100	60.615	Rhinopithecus_bieti
ENSORLG00015022523	xrn1	72	53.533	YGL173C	XRN1	72	53.533	Saccharomyces_cerevisiae
ENSORLG00015022523	xrn1	100	61.696	ENSSBOG00000029561	XRN1	100	61.845	Saimiri_boliviensis_boliviensis
ENSORLG00015022523	xrn1	89	70.840	ENSSHAG00000016207	XRN1	100	59.943	Sarcophilus_harrisii
ENSORLG00015022523	xrn1	100	67.663	ENSSFOG00015024211	xrn1	100	67.719	Scleropages_formosus
ENSORLG00015022523	xrn1	100	78.452	ENSSMAG00000016534	xrn1	100	78.625	Scophthalmus_maximus
ENSORLG00015022523	xrn1	92	86.639	ENSSDUG00000010306	xrn1	97	86.957	Seriola_dumerili
ENSORLG00015022523	xrn1	98	85.423	ENSSLDG00000021543	xrn1	100	85.423	Seriola_lalandi_dorsalis
ENSORLG00015022523	xrn1	65	68.144	ENSSARG00000007741	-	75	68.144	Sorex_araneus
ENSORLG00015022523	xrn1	97	72.383	ENSTGUG00000008498	XRN1	100	61.263	Taeniopygia_guttata
ENSORLG00015022523	xrn1	100	72.812	ENSTRUG00000004895	xrn1	96	84.989	Takifugu_rubripes
ENSORLG00015022523	xrn1	98	78.910	ENSTNIG00000017615	xrn1	100	70.276	Tetraodon_nigroviridis
ENSORLG00015022523	xrn1	74	84.677	ENSTBEG00000003256	XRN1	77	84.252	Tupaia_belangeri
ENSORLG00015022523	xrn1	100	57.384	ENSTTRG00000012914	XRN1	100	57.425	Tursiops_truncatus
ENSORLG00015022523	xrn1	89	70.697	ENSUAMG00000001608	XRN1	99	75.397	Ursus_americanus
ENSORLG00015022523	xrn1	89	72.538	ENSUMAG00000013625	XRN1	100	60.977	Ursus_maritimus
ENSORLG00015022523	xrn1	100	58.737	ENSVPAG00000004690	XRN1	100	58.737	Vicugna_pacos
ENSORLG00015022523	xrn1	79	83.784	ENSVVUG00000024461	XRN1	98	81.579	Vulpes_vulpes
ENSORLG00015022523	xrn1	100	61.298	ENSXETG00000000619	xrn1	99	85.302	Xenopus_tropicalis
ENSORLG00015022523	xrn1	100	77.815	ENSXCOG00000007917	xrn1	100	76.291	Xiphophorus_couchianus
ENSORLG00015022523	xrn1	100	77.763	ENSXMAG00000018320	xrn1	98	85.550	Xiphophorus_maculatus